Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:64054089-65015590

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fer 17 63863062 to 64139496 276434 + protein coding gene fer (fms/fps related) protein kinase
Tssr145549 17 64078899 to 64078919 20 + TSS region transcription start site region 145549
Tssr5188 17 64100435 to 64100463 28 + TSS region transcription start site region 5188
Gm46590 17 64122052 to 64133429 11377 - lncRNA gene predicted gene, 46590
Rpl36-ps6 17 64192722 to 64192999 277 + pseudogene ribosomal protein L36, pseudogene 6
Cpgi9414 17 64212247 to 64212486 239 CpG island CpG island 9414
4930435F05Rik 17 64265071 to 64269692 4621 - lncRNA gene RIKEN cDNA 4930435F05 gene
Gm34858 17 64267675 to 64276669 8994 + lncRNA gene predicted gene, 34858
Tssr149037 17 64269695 to 64269713 18 - TSS region transcription start site region 149037
Tssr145550 17 64269856 to 64269872 16 + TSS region transcription start site region 145550
Pja2 17 64281006 to 64331883 50877 - protein coding gene praja ring finger ubiquitin ligase 2
D17Ium1 17 64284941 to 64285167 226 DNA segment DNA segment, Chr 17, Indiana University Medical 1
Tssr149038 17 64290045 to 64290047 2 - TSS region transcription start site region 149038
Tssr149039 17 64309307 to 64309320 13 - TSS region transcription start site region 149039
Tssr149040 17 64311299 to 64311328 29 - TSS region transcription start site region 149040
Gm24194 17 64321526 to 64321615 89 - miRNA gene predicted gene, 24194
Cpgi9415 17 64331272 to 64332562 1290 CpG island CpG island 9415
Tssr149041 17 64331817 to 64331957 140 - TSS region transcription start site region 149041
Tssr149042 17 64331965 to 64331977 12 - TSS region transcription start site region 149042
Tssr145551 17 64332406 to 64332417 11 + TSS region transcription start site region 145551
Mir6420 17 64440806 to 64440907 101 + miRNA gene microRNA 6420
D17Mit118 17 64481051 to 64481250 199 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 118
AU016765 17 64514089 to 64555590 41501 - lincRNA gene expressed sequence AU016765
Gm35098 17 64528846 to 64530635 1789 + lncRNA gene predicted gene, 35098
Cpgi9416 17 64600376 to 64602212 1836 CpG island CpG island 9416
Tssr145552 17 64600487 to 64600496 9 + TSS region transcription start site region 145552
Tssr145553 17 64600702 to 64600739 37 + TSS region transcription start site region 145553
Tssr145554 17 64600740 to 64600764 24 + TSS region transcription start site region 145554
Tssr145555 17 64600768 to 64600780 12 + TSS region transcription start site region 145555
Tssr145556 17 64600786 to 64600793 7 + TSS region transcription start site region 145556
Tssr145557 17 64601243 to 64601260 17 + TSS region transcription start site region 145557
Tssr145558 17 64601281 to 64601293 12 + TSS region transcription start site region 145558
Tssr145559 17 64601367 to 64601386 19 + TSS region transcription start site region 145559
Tssr145560 17 64601395 to 64601415 20 + TSS region transcription start site region 145560
Man2a1 17 64601649 to 64755110 153461 + protein coding gene mannosidase 2, alpha 1
Tssr149043 17 64602110 to 64602156 46 - TSS region transcription start site region 149043
Tssr145561 17 64634492 to 64634497 5 + TSS region transcription start site region 145561
Tssr145562 17 64634556 to 64634560 4 + TSS region transcription start site region 145562
Tssr145563 17 64677997 to 64677999 2 + TSS region transcription start site region 145563
Tssr145564 17 64717053 to 64717058 5 + TSS region transcription start site region 145564
Tssr145565 17 64719163 to 64719166 3 + TSS region transcription start site region 145565
Tssr145566 17 64721751 to 64721755 4 + TSS region transcription start site region 145566
D17Mit254 17 64737361 to 64737484 123 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 254
Gm17133 17 64748850 to 64754096 5246 - antisense lncRNA gene predicted gene 17133
Tssr145567 17 64753463 to 64753485 22 + TSS region transcription start site region 145567
Tssr145568 17 64755567 to 64755576 9 + TSS region transcription start site region 145568
Dreh 17 64767111 to 64767931 820 + lincRNA gene down-regulated in hepatocellular carcinoma
4930583I09Rik 17 64832523 to 64836071 3548 - protein coding gene RIKEN cDNA 4930583I09 gene
D17Mit151 17 64833045 to 64833168 123 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 151
Gm4701 17 64876201 to 64876924 723 + pseudogene predicted gene 4701
Tssr145569 17 64895806 to 64895822 16 + TSS region transcription start site region 145569
D17Mit90 17 64905346 to 64905591 245 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 90
Gm25344 17 64944721 to 64944852 131 - snoRNA gene predicted gene, 25344
D17Mit204 17 64984562 to 64984737 175 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 204