Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:63899089-65170590

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fer 17 63863062 to 64139496 276434 + protein coding gene fer (fms/fps related) protein kinase
Cpgi9413 17 63937885 to 63938065 180 CpG island CpG island 9413
Tssr145548 17 63937951 to 63937972 21 + TSS region transcription start site region 145548
1110058D11Rik 17 64049862 to 64050672 810 - lncRNA gene RIKEN cDNA 1110058D11 gene
Tssr145549 17 64078899 to 64078919 20 + TSS region transcription start site region 145549
Tssr5188 17 64100435 to 64100463 28 + TSS region transcription start site region 5188
Gm46590 17 64122052 to 64133429 11377 - lncRNA gene predicted gene, 46590
Rpl36-ps6 17 64192722 to 64192999 277 + pseudogene ribosomal protein L36, pseudogene 6
Cpgi9414 17 64212247 to 64212486 239 CpG island CpG island 9414
4930435F05Rik 17 64265071 to 64269692 4621 - lncRNA gene RIKEN cDNA 4930435F05 gene
Gm34858 17 64267675 to 64276669 8994 + lncRNA gene predicted gene, 34858
Tssr149037 17 64269695 to 64269713 18 - TSS region transcription start site region 149037
Tssr145550 17 64269856 to 64269872 16 + TSS region transcription start site region 145550
Pja2 17 64281006 to 64331883 50877 - protein coding gene praja ring finger ubiquitin ligase 2
D17Ium1 17 64284941 to 64285167 226 DNA segment DNA segment, Chr 17, Indiana University Medical 1
Tssr149038 17 64290045 to 64290047 2 - TSS region transcription start site region 149038
Tssr149039 17 64309307 to 64309320 13 - TSS region transcription start site region 149039
Tssr149040 17 64311299 to 64311328 29 - TSS region transcription start site region 149040
Gm24194 17 64321526 to 64321615 89 - miRNA gene predicted gene, 24194
Cpgi9415 17 64331272 to 64332562 1290 CpG island CpG island 9415
Tssr149041 17 64331817 to 64331957 140 - TSS region transcription start site region 149041
Tssr149042 17 64331965 to 64331977 12 - TSS region transcription start site region 149042
Tssr145551 17 64332406 to 64332417 11 + TSS region transcription start site region 145551
Mir6420 17 64440806 to 64440907 101 + miRNA gene microRNA 6420
D17Mit118 17 64481051 to 64481250 199 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 118
AU016765 17 64514089 to 64555590 41501 - lincRNA gene expressed sequence AU016765
Gm35098 17 64528846 to 64530635 1789 + lncRNA gene predicted gene, 35098
Cpgi9416 17 64600376 to 64602212 1836 CpG island CpG island 9416
Tssr145552 17 64600487 to 64600496 9 + TSS region transcription start site region 145552
Tssr145553 17 64600702 to 64600739 37 + TSS region transcription start site region 145553
Tssr145554 17 64600740 to 64600764 24 + TSS region transcription start site region 145554
Tssr145555 17 64600768 to 64600780 12 + TSS region transcription start site region 145555
Tssr145556 17 64600786 to 64600793 7 + TSS region transcription start site region 145556
Tssr145557 17 64601243 to 64601260 17 + TSS region transcription start site region 145557
Tssr145558 17 64601281 to 64601293 12 + TSS region transcription start site region 145558
Tssr145559 17 64601367 to 64601386 19 + TSS region transcription start site region 145559
Tssr145560 17 64601395 to 64601415 20 + TSS region transcription start site region 145560
Man2a1 17 64601649 to 64755110 153461 + protein coding gene mannosidase 2, alpha 1
Tssr149043 17 64602110 to 64602156 46 - TSS region transcription start site region 149043
Tssr145561 17 64634492 to 64634497 5 + TSS region transcription start site region 145561
Tssr145562 17 64634556 to 64634560 4 + TSS region transcription start site region 145562
Tssr145563 17 64677997 to 64677999 2 + TSS region transcription start site region 145563
Tssr145564 17 64717053 to 64717058 5 + TSS region transcription start site region 145564
Tssr145565 17 64719163 to 64719166 3 + TSS region transcription start site region 145565
Tssr145566 17 64721751 to 64721755 4 + TSS region transcription start site region 145566
D17Mit254 17 64737361 to 64737484 123 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 254
Gm17133 17 64748850 to 64754096 5246 - antisense lncRNA gene predicted gene 17133
Tssr145567 17 64753463 to 64753485 22 + TSS region transcription start site region 145567
Tssr145568 17 64755567 to 64755576 9 + TSS region transcription start site region 145568
Dreh 17 64767111 to 64767931 820 + lincRNA gene down-regulated in hepatocellular carcinoma
4930583I09Rik 17 64832523 to 64836071 3548 - protein coding gene RIKEN cDNA 4930583I09 gene
D17Mit151 17 64833045 to 64833168 123 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 151
Gm4701 17 64876201 to 64876924 723 + pseudogene predicted gene 4701
Tssr145569 17 64895806 to 64895822 16 + TSS region transcription start site region 145569
D17Mit90 17 64905346 to 64905591 245 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 90
Gm25344 17 64944721 to 64944852 131 - snoRNA gene predicted gene, 25344
D17Mit204 17 64984562 to 64984737 175 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 204
D17Mit110 17 65055530 to 65055666 136 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 110
Gm35228 17 65080364 to 65101392 21028 - lncRNA gene predicted gene, 35228
Gm49865 17 65168514 to 65169203 689 - pseudogene predicted gene, 49865