Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:63440376-65762212

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146 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tfv1 17 4804477 to 65330362 60525885 QTL total food volume 1
Fbxl17 17 63057452 to 63500017 442565 - protein coding gene F-box and leucine-rich repeat protein 17
Tssr149024 17 63451790 to 63451822 32 - TSS region transcription start site region 149024
D130011O08Rik 17 63462317 to 63467279 4962 unclassified gene RIKEN cDNA D130011O08 gene
Tssr149025 17 63472734 to 63472738 4 - TSS region transcription start site region 149025
Tssr149026 17 63494370 to 63494374 4 - TSS region transcription start site region 149026
Cpgi9410 17 63498836 to 63500816 1980 CpG island CpG island 9410
Tssr145540 17 63499010 to 63499033 23 + TSS region transcription start site region 145540
Tssr149027 17 63499452 to 63499526 74 - TSS region transcription start site region 149027
Tssr149028 17 63499689 to 63499748 59 - TSS region transcription start site region 149028
Tssr149029 17 63499983 to 63500075 92 - TSS region transcription start site region 149029
Tssr149030 17 63500250 to 63500268 18 - TSS region transcription start site region 149030
Tssr149031 17 63500300 to 63500314 14 - TSS region transcription start site region 149031
Tssr149032 17 63500329 to 63500378 49 - TSS region transcription start site region 149032
Tssr149033 17 63500531 to 63500598 67 - TSS region transcription start site region 149033
Tssr149034 17 63500600 to 63500622 22 - TSS region transcription start site region 149034
Tssr149035 17 63500630 to 63500641 11 - TSS region transcription start site region 149035
Tssr145541 17 63533430 to 63533441 11 + TSS region transcription start site region 145541
Gm5497 17 63570903 to 63571248 345 + pseudogene predicted gene 5497
Gm49862 17 63621905 to 63622256 351 - pseudogene predicted gene, 49862
Gm7253 17 63627617 to 63627954 337 - pseudogene predicted gene 7253
D17Mit89 17 63639035 to 63639149 114 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 89
Gm9300 17 63701836 to 63702490 654 - pseudogene predicted gene 9300
Tssr149036 17 63702572 to 63702573 1 - TSS region transcription start site region 149036
Tssr145542 17 63829935 to 63829950 15 + TSS region transcription start site region 145542
Cpgi9411 17 63849493 to 63849933 440 CpG island CpG island 9411
Tssr145543 17 63863041 to 63863080 39 + TSS region transcription start site region 145543
Fer 17 63863062 to 64139496 276434 + protein coding gene fer (fms/fps related) protein kinase
Cpgi9412 17 63863063 to 63864686 1623 CpG island CpG island 9412
Tssr145544 17 63863119 to 63863143 24 + TSS region transcription start site region 145544
A930002H24Rik 17 63863300 to 63863791 491 - unclassified gene RIKEN cDNA A930002H24 gene
Tssr145545 17 63863972 to 63864038 66 + TSS region transcription start site region 145545
Tssr145546 17 63864041 to 63864052 11 + TSS region transcription start site region 145546
D130052P04Rik 17 63871393 to 63875436 4043 unclassified gene RIKEN cDNA D130052P04 gene
Tssr145547 17 63896051 to 63896063 12 + TSS region transcription start site region 145547
Cpgi9413 17 63937885 to 63938065 180 CpG island CpG island 9413
Tssr145548 17 63937951 to 63937972 21 + TSS region transcription start site region 145548
1110058D11Rik 17 64049862 to 64050672 810 - lncRNA gene RIKEN cDNA 1110058D11 gene
Tssr145549 17 64078899 to 64078919 20 + TSS region transcription start site region 145549
Tssr5188 17 64100435 to 64100463 28 + TSS region transcription start site region 5188
Gm46590 17 64122052 to 64133429 11377 - lncRNA gene predicted gene, 46590
Rpl36-ps6 17 64192722 to 64192999 277 + pseudogene ribosomal protein L36, pseudogene 6
Cpgi9414 17 64212247 to 64212486 239 CpG island CpG island 9414
4930435F05Rik 17 64265071 to 64269692 4621 - lncRNA gene RIKEN cDNA 4930435F05 gene
Gm34858 17 64267675 to 64276669 8994 + lncRNA gene predicted gene, 34858
Tssr149037 17 64269695 to 64269713 18 - TSS region transcription start site region 149037
Tssr145550 17 64269856 to 64269872 16 + TSS region transcription start site region 145550
Pja2 17 64281006 to 64331883 50877 - protein coding gene praja ring finger ubiquitin ligase 2
D17Ium1 17 64284941 to 64285167 226 DNA segment DNA segment, Chr 17, Indiana University Medical 1
Tssr149038 17 64290045 to 64290047 2 - TSS region transcription start site region 149038
Tssr149039 17 64309307 to 64309320 13 - TSS region transcription start site region 149039
Tssr149040 17 64311299 to 64311328 29 - TSS region transcription start site region 149040
Gm24194 17 64321526 to 64321615 89 - miRNA gene predicted gene, 24194
Cpgi9415 17 64331272 to 64332562 1290 CpG island CpG island 9415
Tssr149041 17 64331817 to 64331957 140 - TSS region transcription start site region 149041
Tssr149042 17 64331965 to 64331977 12 - TSS region transcription start site region 149042
Tssr145551 17 64332406 to 64332417 11 + TSS region transcription start site region 145551
Mir6420 17 64440806 to 64440907 101 + miRNA gene microRNA 6420
D17Mit118 17 64481051 to 64481250 199 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 118
AU016765 17 64514089 to 64555590 41501 - lincRNA gene expressed sequence AU016765
Gm35098 17 64528846 to 64530635 1789 + lncRNA gene predicted gene, 35098
Cpgi9416 17 64600376 to 64602212 1836 CpG island CpG island 9416
Tssr145552 17 64600487 to 64600496 9 + TSS region transcription start site region 145552
Tssr145553 17 64600702 to 64600739 37 + TSS region transcription start site region 145553
Tssr145554 17 64600740 to 64600764 24 + TSS region transcription start site region 145554
Tssr145555 17 64600768 to 64600780 12 + TSS region transcription start site region 145555
Tssr145556 17 64600786 to 64600793 7 + TSS region transcription start site region 145556
Tssr145557 17 64601243 to 64601260 17 + TSS region transcription start site region 145557
Tssr145558 17 64601281 to 64601293 12 + TSS region transcription start site region 145558
Tssr145559 17 64601367 to 64601386 19 + TSS region transcription start site region 145559
Tssr145560 17 64601395 to 64601415 20 + TSS region transcription start site region 145560
Man2a1 17 64601649 to 64755110 153461 + protein coding gene mannosidase 2, alpha 1
Tssr149043 17 64602110 to 64602156 46 - TSS region transcription start site region 149043
Tssr145561 17 64634492 to 64634497 5 + TSS region transcription start site region 145561
Tssr145562 17 64634556 to 64634560 4 + TSS region transcription start site region 145562
Tssr145563 17 64677997 to 64677999 2 + TSS region transcription start site region 145563
Tssr145564 17 64717053 to 64717058 5 + TSS region transcription start site region 145564
Tssr145565 17 64719163 to 64719166 3 + TSS region transcription start site region 145565
Tssr145566 17 64721751 to 64721755 4 + TSS region transcription start site region 145566
D17Mit254 17 64737361 to 64737484 123 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 254
Gm17133 17 64748850 to 64754096 5246 - antisense lncRNA gene predicted gene 17133
Tssr145567 17 64753463 to 64753485 22 + TSS region transcription start site region 145567
Tssr145568 17 64755567 to 64755576 9 + TSS region transcription start site region 145568
Dreh 17 64767111 to 64767931 820 + lincRNA gene down-regulated in hepatocellular carcinoma
4930583I09Rik 17 64832523 to 64836071 3548 - protein coding gene RIKEN cDNA 4930583I09 gene
D17Mit151 17 64833045 to 64833168 123 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 151
Gm4701 17 64876201 to 64876924 723 + pseudogene predicted gene 4701
Tssr145569 17 64895806 to 64895822 16 + TSS region transcription start site region 145569
D17Mit90 17 64905346 to 64905591 245 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 90
Gm25344 17 64944721 to 64944852 131 - snoRNA gene predicted gene, 25344
D17Mit204 17 64984562 to 64984737 175 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 204
D17Mit110 17 65055530 to 65055666 136 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 110
Gm35228 17 65080364 to 65101392 21028 - lncRNA gene predicted gene, 35228
Gm49865 17 65168514 to 65169203 689 - pseudogene predicted gene, 49865
Gm18419 17 65248241 to 65249220 979 + pseudogene predicted gene, 18419
Tmem232 17 65255999 to 65540782 284783 - protein coding gene transmembrane protein 232
D17Mit91 17 65330251 to 65330362 111 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 91
D17Dcr21 17 65340471 to 65340606 135 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 21
D17Mit152 17 65340484 to 65340609 125 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 152
Tssr149044 17 65366828 to 65366830 2 - TSS region transcription start site region 149044
Gm18992 17 65395738 to 65396290 552 - pseudogene predicted gene, 18992
Gm9288 17 65427478 to 65429044 1566 + pseudogene predicted gene 9288
Gm18736 17 65438128 to 65438697 569 - pseudogene predicted gene, 18736
Gm25731 17 65509368 to 65509492 124 + miRNA gene predicted gene, 25731
Tssr149045 17 65510024 to 65510043 19 - TSS region transcription start site region 149045
Tssr149046 17 65510048 to 65510051 3 - TSS region transcription start site region 149046
Tssr149047 17 65510054 to 65510084 30 - TSS region transcription start site region 149047
Gm18138 17 65513476 to 65513968 492 - pseudogene predicted gene, 18138
Tssr149048 17 65540747 to 65540773 26 - TSS region transcription start site region 149048
Tssr149049 17 65540785 to 65540792 7 - TSS region transcription start site region 149049
Gm35400 17 65555994 to 65560038 4044 - lncRNA gene predicted gene, 35400
Gm49866 17 65560385 to 65560776 391 - pseudogene predicted gene, 49866
D17Mit255 17 65567151 to 65567275 124 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 255
Vapa 17 65580053 to 65613939 33886 - protein coding gene vesicle-associated membrane protein, associated protein A
Tssr149050 17 65580639 to 65580652 13 - TSS region transcription start site region 149050
Tssr149051 17 65580696 to 65580708 12 - TSS region transcription start site region 149051
Tssr149052 17 65580832 to 65580844 12 - TSS region transcription start site region 149052
Tssr149053 17 65594931 to 65594991 60 - TSS region transcription start site region 149053
Cpgi9417 17 65612316 to 65614370 2054 CpG island CpG island 9417
Tssr149054 17 65613486 to 65613514 28 - TSS region transcription start site region 149054
Tssr149055 17 65613521 to 65613548 27 - TSS region transcription start site region 149055
Tssr149056 17 65613864 to 65613911 47 - TSS region transcription start site region 149056
Tssr149057 17 65613922 to 65613937 15 - TSS region transcription start site region 149057
Txndc2 17 65637507 to 65642168 4661 - protein coding gene thioredoxin domain containing 2 (spermatozoa)
Tssr149058 17 65638946 to 65638950 4 - TSS region transcription start site region 149058
Tssr149059 17 65639786 to 65639799 13 - TSS region transcription start site region 149059
Tssr149060 17 65639807 to 65639817 10 - TSS region transcription start site region 149060
Tssr149061 17 65639822 to 65639839 17 - TSS region transcription start site region 149061
Tssr5189 17 65642145 to 65642152 7 - TSS region transcription start site region 5189
Tssr149062 17 65642159 to 65642182 23 - TSS region transcription start site region 149062
Tssr149063 17 65642188 to 65642206 18 - TSS region transcription start site region 149063
Tssr149064 17 65642212 to 65642223 11 - TSS region transcription start site region 149064
Gm35477 17 65642319 to 65644492 2173 + lncRNA gene predicted gene, 35477
Tssr145570 17 65642321 to 65642328 7 + TSS region transcription start site region 145570
Tssr149065 17 65643937 to 65643967 30 - TSS region transcription start site region 149065
Rab31 17 65651729 to 65772752 121023 - protein coding gene RAB31, member RAS oncogene family
Tssr149066 17 65654103 to 65654109 6 - TSS region transcription start site region 149066
Tssr149067 17 65654309 to 65654325 16 - TSS region transcription start site region 149067
Gm49867 17 65661327 to 65661578 251 - pseudogene predicted gene, 49867
Tssr149068 17 65674429 to 65674432 3 - TSS region transcription start site region 149068
Tssr149069 17 65675041 to 65675051 10 - TSS region transcription start site region 149069
Tssr149070 17 65675064 to 65675076 12 - TSS region transcription start site region 149070
Tssr149071 17 65675088 to 65675093 5 - TSS region transcription start site region 149071
Tssr149072 17 65704781 to 65704794 13 - TSS region transcription start site region 149072
Tssr145571 17 65724506 to 65724509 3 + TSS region transcription start site region 145571
Tssr149073 17 65748483 to 65748489 6 - TSS region transcription start site region 149073