Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:62864452-64134526

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Efna5 17 62604184 to 62881317 277133 - protein coding gene ephrin A5
Tssr149002 17 62870144 to 62870146 2 - TSS region transcription start site region 149002
Cpgi9409 17 62879666 to 62884377 4711 CpG island CpG island 9409
Tssr149003 17 62880870 to 62880885 15 - TSS region transcription start site region 149003
Tssr149004 17 62881252 to 62881353 101 - TSS region transcription start site region 149004
Tssr149005 17 62881392 to 62881458 66 - TSS region transcription start site region 149005
Tssr149006 17 62881677 to 62881729 52 - TSS region transcription start site region 149006
Tssr149007 17 62882101 to 62882173 72 - TSS region transcription start site region 149007
Tssr149008 17 62882426 to 62882460 34 - TSS region transcription start site region 149008
Tssr149009 17 62882663 to 62882692 29 - TSS region transcription start site region 149009
Tssr149010 17 62882711 to 62882723 12 - TSS region transcription start site region 149010
Tssr149011 17 62882842 to 62882895 53 - TSS region transcription start site region 149011
Tssr149012 17 62882983 to 62883036 53 - TSS region transcription start site region 149012
Tssr145535 17 62883393 to 62883399 6 + TSS region transcription start site region 145535
Gm34179 17 62938862 to 62939413 551 - lncRNA gene predicted gene, 34179
Tssr145536 17 62941048 to 62941056 8 + TSS region transcription start site region 145536
D17Mit253 17 62941706 to 62941936 230 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 253
Gm34230 17 63025837 to 63039203 13366 + lncRNA gene predicted gene, 34230
Gm34324 17 63041384 to 63046049 4665 + lncRNA gene predicted gene, 34324
Tssr145537 17 63044786 to 63044787 1 + TSS region transcription start site region 145537
Fbxl17 17 63057452 to 63500017 442565 - protein coding gene F-box and leucine-rich repeat protein 17
Gm25348 17 63096890 to 63097000 110 - rRNA gene predicted gene, 25348
Tssr149013 17 63141168 to 63141172 4 - TSS region transcription start site region 149013
Gm24730 17 63202738 to 63202854 116 + snoRNA gene predicted gene, 24730
Tssr149014 17 63216948 to 63216952 4 - TSS region transcription start site region 149014
Tssr149015 17 63265051 to 63265054 3 - TSS region transcription start site region 149015
Gm41607 17 63271339 to 63286375 15036 - lncRNA gene predicted gene, 41607
Gm46580 17 63286429 to 63297797 11368 - protein coding gene predicted gene, 46580
Tssr149016 17 63294971 to 63294984 13 - TSS region transcription start site region 149016
Tssr149017 17 63304132 to 63304145 13 - TSS region transcription start site region 149017
Tssr149018 17 63304174 to 63304190 16 - TSS region transcription start site region 149018
4930405O22Rik 17 63305446 to 63312973 7527 - sense intronic lncRNA gene RIKEN cDNA 4930405O22 gene
Tssr149019 17 63311291 to 63311295 4 - TSS region transcription start site region 149019
Tssr149020 17 63312956 to 63312963 7 - TSS region transcription start site region 149020
Tssr149021 17 63312968 to 63312988 20 - TSS region transcription start site region 149021
Tssr149022 17 63333885 to 63333889 4 - TSS region transcription start site region 149022
Gm17228 17 63346920 to 63347410 490 - pseudogene predicted gene 17228
Gm18418 17 63347441 to 63348234 793 + pseudogene predicted gene, 18418
Gm24813 17 63347671 to 63347754 83 + miRNA gene predicted gene, 24813
Tssr145538 17 63422125 to 63422135 10 + TSS region transcription start site region 145538
Tssr145539 17 63424695 to 63424699 4 + TSS region transcription start site region 145539
Tssr149023 17 63428059 to 63428068 9 - TSS region transcription start site region 149023
Tssr149024 17 63451790 to 63451822 32 - TSS region transcription start site region 149024
D130011O08Rik 17 63462317 to 63467279 4962 unclassified gene RIKEN cDNA D130011O08 gene
Tssr149025 17 63472734 to 63472738 4 - TSS region transcription start site region 149025
Tssr149026 17 63494370 to 63494374 4 - TSS region transcription start site region 149026
Cpgi9410 17 63498836 to 63500816 1980 CpG island CpG island 9410
Tssr145540 17 63499010 to 63499033 23 + TSS region transcription start site region 145540
Tssr149027 17 63499452 to 63499526 74 - TSS region transcription start site region 149027
Tssr149028 17 63499689 to 63499748 59 - TSS region transcription start site region 149028
Tssr149029 17 63499983 to 63500075 92 - TSS region transcription start site region 149029
Tssr149030 17 63500250 to 63500268 18 - TSS region transcription start site region 149030
Tssr149031 17 63500300 to 63500314 14 - TSS region transcription start site region 149031
Tssr149032 17 63500329 to 63500378 49 - TSS region transcription start site region 149032
Tssr149033 17 63500531 to 63500598 67 - TSS region transcription start site region 149033
Tssr149034 17 63500600 to 63500622 22 - TSS region transcription start site region 149034
Tssr149035 17 63500630 to 63500641 11 - TSS region transcription start site region 149035
Tssr145541 17 63533430 to 63533441 11 + TSS region transcription start site region 145541
Gm5497 17 63570903 to 63571248 345 + pseudogene predicted gene 5497
Gm49862 17 63621905 to 63622256 351 - pseudogene predicted gene, 49862
Gm7253 17 63627617 to 63627954 337 - pseudogene predicted gene 7253
D17Mit89 17 63639035 to 63639149 114 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 89
Gm9300 17 63701836 to 63702490 654 - pseudogene predicted gene 9300
Tssr149036 17 63702572 to 63702573 1 - TSS region transcription start site region 149036
Tssr145542 17 63829935 to 63829950 15 + TSS region transcription start site region 145542
Cpgi9411 17 63849493 to 63849933 440 CpG island CpG island 9411
Tssr145543 17 63863041 to 63863080 39 + TSS region transcription start site region 145543
Fer 17 63863062 to 64139496 276434 + protein coding gene fer (fms/fps related) protein kinase
Cpgi9412 17 63863063 to 63864686 1623 CpG island CpG island 9412
Tssr145544 17 63863119 to 63863143 24 + TSS region transcription start site region 145544
A930002H24Rik 17 63863300 to 63863791 491 - unclassified gene RIKEN cDNA A930002H24 gene
Tssr145545 17 63863972 to 63864038 66 + TSS region transcription start site region 145545
Tssr145546 17 63864041 to 63864052 11 + TSS region transcription start site region 145546
D130052P04Rik 17 63871393 to 63875436 4043 unclassified gene RIKEN cDNA D130052P04 gene
Tssr145547 17 63896051 to 63896063 12 + TSS region transcription start site region 145547
Cpgi9413 17 63937885 to 63938065 180 CpG island CpG island 9413
Tssr145548 17 63937951 to 63937972 21 + TSS region transcription start site region 145548
1110058D11Rik 17 64049862 to 64050672 810 - lncRNA gene RIKEN cDNA 1110058D11 gene
Tssr145549 17 64078899 to 64078919 20 + TSS region transcription start site region 145549
Tssr5188 17 64100435 to 64100463 28 + TSS region transcription start site region 5188
Gm46590 17 64122052 to 64133429 11377 - lncRNA gene predicted gene, 46590