Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:6249181-7069186

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr4990 17 6253789 to 6253802 13 + TSS region transcription start site region 4990
Ppp1r2-ps6 17 6253903 to 6254523 620 + pseudogene protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 6
Cpgi8569 17 6256833 to 6257131 298 CpG island CpG island 8569
Tssr142470 17 6256837 to 6256858 21 + TSS region transcription start site region 142470
Tmem181a 17 6256862 to 6308314 51452 + protein coding gene transmembrane protein 181A
Tssr142471 17 6256890 to 6256938 48 + TSS region transcription start site region 142471
Cpgi8570 17 6270203 to 6271085 882 CpG island CpG island 8570
Tssr142472 17 6270456 to 6270508 52 + TSS region transcription start site region 142472
Tssr4991 17 6296729 to 6296732 3 + TSS region transcription start site region 4991
Dynlt1a 17 6306344 to 6317474 11130 - protein coding gene dynein light chain Tctex-type 1A
Tssr4992 17 6307993 to 6307996 3 + TSS region transcription start site region 4992
Gm26848 17 6314199 to 6493180 178981 + lincRNA gene predicted gene, 26848
Cpgi8571 17 6316777 to 6317051 274 CpG island CpG island 8571
Tssr146317 17 6317417 to 6317441 24 - TSS region transcription start site region 146317
Tssr146318 17 6317482 to 6317517 35 - TSS region transcription start site region 146318
Ppp1r2-ps1 17 6324025 to 6324642 617 - pseudogene protein phosphatase 1, regulatory inhibitor subunit 2, pseudogene 1
Gm2792 17 6339404 to 6358796 19392 - pseudogene predicted gene 2792
Gm49693 17 6354689 to 6355526 837 - pseudogene predicted gene, 49693
Gm29719 17 6369098 to 6427100 58002 - unclassified non-coding RNA gene predicted gene, 29719
Dynlt1b 17 6430112 to 6436296 6184 + protein coding gene dynein light chain Tctex-type 1B
Tssr142473 17 6430167 to 6430204 37 + TSS region transcription start site region 142473
Tmem181b-ps 17 6439002 to 6450994 11992 - pseudogene transmembrane protein 181B, pseudogene
Ppp1r2-ps5 17 6492191 to 6494321 2130 - pseudogene protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 5
Gm2808 17 6511791 to 6528713 16922 - protein coding gene predicted gene 2808
Gm17880 17 6521528 to 6522546 1018 - pseudogene predicted gene, 17880
Gm29721 17 6535892 to 6582703 46811 - protein coding gene predicted gene, 29721
Dynlt1c 17 6601779 to 6607891 6112 + protein coding gene dynein light chain Tctex-type 1C
Tmem181c-ps 17 6610103 to 6620925 10822 - pseudogene transmembrane protein 181C, pseudogene
Dynlt1f 17 6646602 to 6655900 9298 - protein coding gene dynein light chain Tctex-type 1F
Tssr4993 17 6659053 to 6659083 30 + TSS region transcription start site region 4993
Sytl3 17 6659093 to 6738044 78951 + protein coding gene synaptotagmin-like 3
Tssr142474 17 6659181 to 6659186 5 + TSS region transcription start site region 142474
Gm36309 17 6716001 to 6728327 12326 - lncRNA gene predicted gene, 36309
Tssr142475 17 6730223 to 6730261 38 + TSS region transcription start site region 142475
Ezr 17 6738131 to 6782780 44649 - protein coding gene ezrin
Tssr146319 17 6739803 to 6739830 27 - TSS region transcription start site region 146319
Tssr4994 17 6741235 to 6741257 22 - TSS region transcription start site region 4994
Tssr142476 17 6742352 to 6742376 24 + TSS region transcription start site region 142476
Tssr4995 17 6743277 to 6743288 11 + TSS region transcription start site region 4995
Tssr146320 17 6743809 to 6743820 11 - TSS region transcription start site region 146320
Tssr146321 17 6743838 to 6743846 8 - TSS region transcription start site region 146321
Tssr146322 17 6745991 to 6746029 38 - TSS region transcription start site region 146322
Tssr142477 17 6746286 to 6746292 6 + TSS region transcription start site region 142477
Tssr142478 17 6746309 to 6746316 7 + TSS region transcription start site region 142478
Tssr146323 17 6746813 to 6746820 7 - TSS region transcription start site region 146323
Tssr146324 17 6746859 to 6746868 9 - TSS region transcription start site region 146324
Tssr146325 17 6746887 to 6746892 5 - TSS region transcription start site region 146325
Tssr146326 17 6754718 to 6754744 26 - TSS region transcription start site region 146326
Tssr146327 17 6754827 to 6754838 11 - TSS region transcription start site region 146327
Tssr146328 17 6756019 to 6756030 11 - TSS region transcription start site region 146328
Tssr146329 17 6756090 to 6756103 13 - TSS region transcription start site region 146329
Tssr146330 17 6756943 to 6756951 8 - TSS region transcription start site region 146330
Tssr146331 17 6757444 to 6757446 2 - TSS region transcription start site region 146331
D17Mit1003 17 6762584 to 6762702 118 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 1003
Tssr146332 17 6778340 to 6778344 4 - TSS region transcription start site region 146332
Cpgi8572 17 6782047 to 6783638 1591 CpG island CpG island 8572
Tssr146333 17 6782746 to 6782762 16 - TSS region transcription start site region 146333
Tssr146334 17 6782775 to 6782784 9 - TSS region transcription start site region 146334
Tssr142479 17 6782851 to 6782877 26 + TSS region transcription start site region 142479
Tssr146335 17 6784444 to 6784458 14 - TSS region transcription start site region 146335
Tssr146336 17 6785440 to 6785461 21 - TSS region transcription start site region 146336
Gm41521 17 6788164 to 6792489 4325 - lncRNA gene predicted gene, 41521
Gm49717 17 6790793 to 6791495 702 + pseudogene predicted gene, 49717
Gm2885 17 6798383 to 6807124 8741 - lincRNA gene predicted gene 2885
4933426B08Rik 17 6808509 to 6818529 10020 + lincRNA gene RIKEN cDNA 4933426B08 gene
Tssr142480 17 6816586 to 6816606 20 + TSS region transcription start site region 142480
Tssr146337 17 6827270 to 6827282 12 - TSS region transcription start site region 146337
Cpgi8573 17 6827533 to 6828501 968 CpG island CpG island 8573
Tssr146338 17 6827799 to 6827835 36 - TSS region transcription start site region 146338
Tssr146339 17 6827841 to 6827882 41 - TSS region transcription start site region 146339
Tssr4996 17 6827978 to 6827984 6 + TSS region transcription start site region 4996
Tssr146340 17 6827999 to 6828021 22 - TSS region transcription start site region 146340
Tssr142481 17 6828066 to 6828084 18 + TSS region transcription start site region 142481
Tssr142482 17 6828095 to 6828139 44 + TSS region transcription start site region 142482
Tssr142483 17 6828362 to 6828373 11 + TSS region transcription start site region 142483
Tssr142484 17 6828469 to 6828483 14 + TSS region transcription start site region 142484
Cpgi8574 17 6861573 to 6861998 425 CpG island CpG island 8574
Mir692-1 17 6895229 to 6895337 108 - miRNA gene microRNA 692-1
1700122H20Rik 17 6895940 to 6901718 5778 + antisense lncRNA gene RIKEN cDNA 1700122H20 gene
Tssr142485 17 6895952 to 6895963 11 + TSS region transcription start site region 142485
Rsph3b 17 6904716 to 6948356 43640 - protein coding gene radial spoke 3B homolog (Chlamydomonas)
Cpgi8575 17 6948068 to 6948424 356 CpG island CpG island 8575
Tssr146341 17 6948283 to 6948349 66 - TSS region transcription start site region 146341
Gm49719 17 6948446 to 6957196 8750 + antisense lncRNA gene predicted gene, 49719
Tssr146342 17 6948721 to 6948745 24 - TSS region transcription start site region 146342
Tagap1 17 6955011 to 6961156 6145 - protein coding gene T cell activation GTPase activating protein 1
Cpgi8576 17 6960869 to 6961060 191 CpG island CpG island 8576
Cpgi8577 17 6978451 to 6979133 682 CpG island CpG island 8577
Rnaset2b 17 6978860 to 6998193 19333 + protein coding gene ribonuclease T2B
Tssr142486 17 6978893 to 6978912 19 + TSS region transcription start site region 142486
Gm49721 17 6978904 to 7043950 65046 + protein coding gene predicted gene, 49721
Tssr142487 17 6978963 to 6978986 23 + TSS region transcription start site region 142487
D17Mit195a 17 6979430 to 6979508 78 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 195a
Tssr146343 17 6993251 to 6993265 14 - TSS region transcription start site region 146343
D17Mit98a 17 7022347 to 7022606 259 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 98a
Gm1604b 17 7025568 to 7087597 62029 + protein coding gene predicted gene 1604b
Gm25119 17 7042478 to 7042565 87 - snoRNA gene predicted gene, 25119