Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:6080167-6780204

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
l17J1 17 3924615 to 6096434 2171819 heritable phenotypic marker lethal, Chr 17, Jackson 1
l17J2 17 3924615 to 6096434 2171819 heritable phenotypic marker lethal, Chr 17, Jackson 2
Gtf2h5 17 6079828 to 6085488 5660 + protein coding gene general transcription factor IIH, polypeptide 5
D17Mit172 17 6096332 to 6096434 102 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 172
Tssr146313 17 6106278 to 6106307 29 - TSS region transcription start site region 146313
Cpgi8568 17 6106352 to 6107555 1203 CpG island CpG island 8568
Tssr142458 17 6106464 to 6106482 18 + TSS region transcription start site region 142458
Tssr146314 17 6106475 to 6106488 13 - TSS region transcription start site region 146314
Tssr146315 17 6106489 to 6106539 50 - TSS region transcription start site region 146315
Tssr142459 17 6106521 to 6106563 42 + TSS region transcription start site region 142459
Tssr142460 17 6106564 to 6106600 36 + TSS region transcription start site region 142460
Tssr142461 17 6106608 to 6106617 9 + TSS region transcription start site region 142461
Tssr142462 17 6106808 to 6106819 11 + TSS region transcription start site region 142462
Tssr142463 17 6106824 to 6106838 14 + TSS region transcription start site region 142463
Tulp4 17 6106828 to 6240637 133809 + protein coding gene tubby like protein 4
Tssr142464 17 6106850 to 6106875 25 + TSS region transcription start site region 142464
Tssr142465 17 6106880 to 6106907 27 + TSS region transcription start site region 142465
Tssr142466 17 6106908 to 6106922 14 + TSS region transcription start site region 142466
Tssr142467 17 6107134 to 6107162 28 + TSS region transcription start site region 142467
Tssr4988 17 6107270 to 6107291 21 + TSS region transcription start site region 4988
Gm5812 17 6121208 to 6122164 956 - pseudogene predicted gene 5812
Tssr146316 17 6122160 to 6122203 43 - TSS region transcription start site region 146316
Tssr142468 17 6128366 to 6128375 9 + TSS region transcription start site region 142468
Gm22774 17 6131836 to 6131944 108 - miRNA gene predicted gene, 22774
Gm15590 17 6131854 to 6132405 551 - pseudogene predicted gene 15590
n-R5s26 17 6147419 to 6147540 121 + rRNA gene nuclear encoded rRNA 5S 26
Tssr142469 17 6158763 to 6158767 4 + TSS region transcription start site region 142469
Gm17881 17 6225433 to 6226458 1025 + pseudogene predicted gene, 17881
Tssr4989 17 6241214 to 6241215 1 - TSS region transcription start site region 4989
Tssr4990 17 6253789 to 6253802 13 + TSS region transcription start site region 4990
Ppp1r2-ps6 17 6253903 to 6254523 620 + pseudogene protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 6
Cpgi8569 17 6256833 to 6257131 298 CpG island CpG island 8569
Tssr142470 17 6256837 to 6256858 21 + TSS region transcription start site region 142470
Tmem181a 17 6256862 to 6308314 51452 + protein coding gene transmembrane protein 181A
Tssr142471 17 6256890 to 6256938 48 + TSS region transcription start site region 142471
Cpgi8570 17 6270203 to 6271085 882 CpG island CpG island 8570
Tssr142472 17 6270456 to 6270508 52 + TSS region transcription start site region 142472
Tssr4991 17 6296729 to 6296732 3 + TSS region transcription start site region 4991
Dynlt1a 17 6306344 to 6317474 11130 - protein coding gene dynein light chain Tctex-type 1A
Tssr4992 17 6307993 to 6307996 3 + TSS region transcription start site region 4992
Gm26848 17 6314199 to 6493180 178981 + lincRNA gene predicted gene, 26848
Cpgi8571 17 6316777 to 6317051 274 CpG island CpG island 8571
Tssr146317 17 6317417 to 6317441 24 - TSS region transcription start site region 146317
Tssr146318 17 6317482 to 6317517 35 - TSS region transcription start site region 146318
Ppp1r2-ps1 17 6324025 to 6324642 617 - pseudogene protein phosphatase 1, regulatory inhibitor subunit 2, pseudogene 1
Gm2792 17 6339404 to 6358796 19392 - pseudogene predicted gene 2792
Gm49693 17 6354689 to 6355526 837 - pseudogene predicted gene, 49693
Gm29719 17 6369098 to 6427100 58002 - unclassified non-coding RNA gene predicted gene, 29719
Dynlt1b 17 6430112 to 6436296 6184 + protein coding gene dynein light chain Tctex-type 1B
Tssr142473 17 6430167 to 6430204 37 + TSS region transcription start site region 142473
Tmem181b-ps 17 6439002 to 6450994 11992 - pseudogene transmembrane protein 181B, pseudogene
Ppp1r2-ps5 17 6492191 to 6494321 2130 - pseudogene protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 5
Gm2808 17 6511791 to 6528713 16922 - protein coding gene predicted gene 2808
Gm17880 17 6521528 to 6522546 1018 - pseudogene predicted gene, 17880
Gm29721 17 6535892 to 6582703 46811 - protein coding gene predicted gene, 29721
Dynlt1c 17 6601779 to 6607891 6112 + protein coding gene dynein light chain Tctex-type 1C
Tmem181c-ps 17 6610103 to 6620925 10822 - pseudogene transmembrane protein 181C, pseudogene
Dynlt1f 17 6646602 to 6655900 9298 - protein coding gene dynein light chain Tctex-type 1F
Tssr4993 17 6659053 to 6659083 30 + TSS region transcription start site region 4993
Sytl3 17 6659093 to 6738044 78951 + protein coding gene synaptotagmin-like 3
Tssr142474 17 6659181 to 6659186 5 + TSS region transcription start site region 142474
Gm36309 17 6716001 to 6728327 12326 - lncRNA gene predicted gene, 36309
Tssr142475 17 6730223 to 6730261 38 + TSS region transcription start site region 142475
Ezr 17 6738131 to 6782780 44649 - protein coding gene ezrin
Tssr146319 17 6739803 to 6739830 27 - TSS region transcription start site region 146319
Tssr4994 17 6741235 to 6741257 22 - TSS region transcription start site region 4994
Tssr142476 17 6742352 to 6742376 24 + TSS region transcription start site region 142476
Tssr4995 17 6743277 to 6743288 11 + TSS region transcription start site region 4995
Tssr146320 17 6743809 to 6743820 11 - TSS region transcription start site region 146320
Tssr146321 17 6743838 to 6743846 8 - TSS region transcription start site region 146321
Tssr146322 17 6745991 to 6746029 38 - TSS region transcription start site region 146322
Tssr142477 17 6746286 to 6746292 6 + TSS region transcription start site region 142477
Tssr142478 17 6746309 to 6746316 7 + TSS region transcription start site region 142478
Tssr146323 17 6746813 to 6746820 7 - TSS region transcription start site region 146323
Tssr146324 17 6746859 to 6746868 9 - TSS region transcription start site region 146324
Tssr146325 17 6746887 to 6746892 5 - TSS region transcription start site region 146325
Tssr146326 17 6754718 to 6754744 26 - TSS region transcription start site region 146326
Tssr146327 17 6754827 to 6754838 11 - TSS region transcription start site region 146327
Tssr146328 17 6756019 to 6756030 11 - TSS region transcription start site region 146328
Tssr146329 17 6756090 to 6756103 13 - TSS region transcription start site region 146329
Tssr146330 17 6756943 to 6756951 8 - TSS region transcription start site region 146330
Tssr146331 17 6757444 to 6757446 2 - TSS region transcription start site region 146331
D17Mit1003 17 6762584 to 6762702 118 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 1003
Tssr146332 17 6778340 to 6778344 4 - TSS region transcription start site region 146332