Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:60797426-64967460

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178 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm33890 17 60943979 to 60958946 14967 - lincRNA gene predicted gene, 33890
Gm18070 17 61016618 to 61017365 747 + pseudogene predicted gene, 18070
D17Dcr16 17 61217127 to 61217223 96 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 16
D17Dcr26 17 61230412 to 61230516 104 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 26
Gm23773 17 61259651 to 61259946 295 + unclassified non-coding RNA gene predicted gene, 23773
D17Dcr17 17 61293418 to 61293523 105 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 17
Obox6-ps1 17 61360573 to 61361614 1041 + pseudogene oocyte specific homeobox 6, pseudogene 1
Gm6174 17 61397310 to 61398246 936 + pseudogene predicted gene 6174
Gm34038 17 61477708 to 61496137 18429 + lncRNA gene predicted gene, 34038
D17Dcr27 17 61497532 to 61497632 100 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 27
D17Dcr28 17 61507343 to 61507440 97 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 28
D17Dcr18 17 61563341 to 61563439 98 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 18
D17Dcr29 17 61623880 to 61623984 104 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 29
D17Dcr30 17 61624367 to 61624468 101 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 30
D17Dcr19 17 61710388 to 61710486 98 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 19
Gm4518 17 61780915 to 61781632 717 - pseudogene predicted gene 4518
Tssr145534 17 61781609 to 61781611 2 + TSS region transcription start site region 145534
Gm27023 17 61781683 to 61781967 284 + pseudogene predicted gene, 27023
Gm49859 17 61872375 to 61872654 279 + pseudogene predicted gene, 49859
D17Dcr20 17 61923813 to 61923915 102 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 20
D17Mit4 17 61955078 to 61955175 97 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 4
Gm49860 17 62384258 to 62436057 51799 - lincRNA gene predicted gene, 49860
Gm25800 17 62456987 to 62457120 133 - snoRNA gene predicted gene, 25800
Efna5 17 62604184 to 62881317 277133 - protein coding gene ephrin A5
Tssr148986 17 62604956 to 62604958 2 - TSS region transcription start site region 148986
Tssr148987 17 62606679 to 62606682 3 - TSS region transcription start site region 148987
Tssr148988 17 62609954 to 62609960 6 - TSS region transcription start site region 148988
Tssr148989 17 62627930 to 62627935 5 - TSS region transcription start site region 148989
Tssr148990 17 62649683 to 62649688 5 - TSS region transcription start site region 148990
BC016608 17 62685589 to 62686988 1399 unclassified gene cDNA sequence BC016608
3222402N08Rik 17 62726952 to 62730291 3339 unclassified gene RIKEN cDNA 3222402N08 gene
Tssr148991 17 62733716 to 62733720 4 - TSS region transcription start site region 148991
Tssr148992 17 62734076 to 62734080 4 - TSS region transcription start site region 148992
D17Mit183 17 62740500 to 62740733 233 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 183
Tssr148993 17 62761139 to 62761144 5 - TSS region transcription start site region 148993
Tssr148994 17 62770897 to 62770903 6 - TSS region transcription start site region 148994
Tssr5187 17 62780079 to 62780122 43 - TSS region transcription start site region 5187
Tssr148995 17 62780323 to 62780346 23 - TSS region transcription start site region 148995
Tssr148996 17 62784058 to 62784063 5 - TSS region transcription start site region 148996
Gm46583 17 62786113 to 62790633 4520 - lncRNA gene predicted gene, 46583
Tssr148997 17 62803202 to 62803203 1 - TSS region transcription start site region 148997
Tssr148998 17 62815104 to 62815112 8 - TSS region transcription start site region 148998
Tssr148999 17 62816080 to 62816088 8 - TSS region transcription start site region 148999
Cpgi9408 17 62822940 to 62823170 230 CpG island CpG island 9408
3110005L21Rik 17 62838474 to 62840047 1573 unclassified gene RIKEN cDNA 3110005L21 gene
6430537K16Rik 17 62844253 to 62849408 5155 unclassified gene RIKEN cDNA 6430537K16 gene
Tssr149000 17 62855903 to 62855907 4 - TSS region transcription start site region 149000
C530014P21Rik 17 62858262 to 62863238 4976 unclassified gene RIKEN cDNA C530014P21 gene
Tssr149001 17 62858364 to 62858380 16 - TSS region transcription start site region 149001
Tssr149002 17 62870144 to 62870146 2 - TSS region transcription start site region 149002
Cpgi9409 17 62879666 to 62884377 4711 CpG island CpG island 9409
Tssr149003 17 62880870 to 62880885 15 - TSS region transcription start site region 149003
Tssr149004 17 62881252 to 62881353 101 - TSS region transcription start site region 149004
Tssr149005 17 62881392 to 62881458 66 - TSS region transcription start site region 149005
Tssr149006 17 62881677 to 62881729 52 - TSS region transcription start site region 149006
Tssr149007 17 62882101 to 62882173 72 - TSS region transcription start site region 149007
Tssr149008 17 62882426 to 62882460 34 - TSS region transcription start site region 149008
Tssr149009 17 62882663 to 62882692 29 - TSS region transcription start site region 149009
Tssr149010 17 62882711 to 62882723 12 - TSS region transcription start site region 149010
Tssr149011 17 62882842 to 62882895 53 - TSS region transcription start site region 149011
Tssr149012 17 62882983 to 62883036 53 - TSS region transcription start site region 149012
Tssr145535 17 62883393 to 62883399 6 + TSS region transcription start site region 145535
Gm34179 17 62938862 to 62939413 551 - lncRNA gene predicted gene, 34179
Tssr145536 17 62941048 to 62941056 8 + TSS region transcription start site region 145536
D17Mit253 17 62941706 to 62941936 230 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 253
Gm34230 17 63025837 to 63039203 13366 + lncRNA gene predicted gene, 34230
Gm34324 17 63041384 to 63046049 4665 + lncRNA gene predicted gene, 34324
Tssr145537 17 63044786 to 63044787 1 + TSS region transcription start site region 145537
Fbxl17 17 63057452 to 63500017 442565 - protein coding gene F-box and leucine-rich repeat protein 17
Gm25348 17 63096890 to 63097000 110 - rRNA gene predicted gene, 25348
Tssr149013 17 63141168 to 63141172 4 - TSS region transcription start site region 149013
Gm24730 17 63202738 to 63202854 116 + snoRNA gene predicted gene, 24730
Tssr149014 17 63216948 to 63216952 4 - TSS region transcription start site region 149014
Tssr149015 17 63265051 to 63265054 3 - TSS region transcription start site region 149015
Gm41607 17 63271339 to 63286375 15036 - lncRNA gene predicted gene, 41607
Gm46580 17 63286429 to 63297797 11368 - protein coding gene predicted gene, 46580
Tssr149016 17 63294971 to 63294984 13 - TSS region transcription start site region 149016
Tssr149017 17 63304132 to 63304145 13 - TSS region transcription start site region 149017
Tssr149018 17 63304174 to 63304190 16 - TSS region transcription start site region 149018
4930405O22Rik 17 63305446 to 63312973 7527 - sense intronic lncRNA gene RIKEN cDNA 4930405O22 gene
Tssr149019 17 63311291 to 63311295 4 - TSS region transcription start site region 149019
Tssr149020 17 63312956 to 63312963 7 - TSS region transcription start site region 149020
Tssr149021 17 63312968 to 63312988 20 - TSS region transcription start site region 149021
Tssr149022 17 63333885 to 63333889 4 - TSS region transcription start site region 149022
Gm17228 17 63346920 to 63347410 490 - pseudogene predicted gene 17228
Gm18418 17 63347441 to 63348234 793 + pseudogene predicted gene, 18418
Gm24813 17 63347671 to 63347754 83 + miRNA gene predicted gene, 24813
Tssr145538 17 63422125 to 63422135 10 + TSS region transcription start site region 145538
Tssr145539 17 63424695 to 63424699 4 + TSS region transcription start site region 145539
Tssr149023 17 63428059 to 63428068 9 - TSS region transcription start site region 149023
Tssr149024 17 63451790 to 63451822 32 - TSS region transcription start site region 149024
D130011O08Rik 17 63462317 to 63467279 4962 unclassified gene RIKEN cDNA D130011O08 gene
Tssr149025 17 63472734 to 63472738 4 - TSS region transcription start site region 149025
Tssr149026 17 63494370 to 63494374 4 - TSS region transcription start site region 149026
Cpgi9410 17 63498836 to 63500816 1980 CpG island CpG island 9410
Tssr145540 17 63499010 to 63499033 23 + TSS region transcription start site region 145540
Tssr149027 17 63499452 to 63499526 74 - TSS region transcription start site region 149027
Tssr149028 17 63499689 to 63499748 59 - TSS region transcription start site region 149028
Tssr149029 17 63499983 to 63500075 92 - TSS region transcription start site region 149029
Tssr149030 17 63500250 to 63500268 18 - TSS region transcription start site region 149030
Tssr149031 17 63500300 to 63500314 14 - TSS region transcription start site region 149031
Tssr149032 17 63500329 to 63500378 49 - TSS region transcription start site region 149032
Tssr149033 17 63500531 to 63500598 67 - TSS region transcription start site region 149033
Tssr149034 17 63500600 to 63500622 22 - TSS region transcription start site region 149034
Tssr149035 17 63500630 to 63500641 11 - TSS region transcription start site region 149035
Tssr145541 17 63533430 to 63533441 11 + TSS region transcription start site region 145541
Gm5497 17 63570903 to 63571248 345 + pseudogene predicted gene 5497
Gm49862 17 63621905 to 63622256 351 - pseudogene predicted gene, 49862
Gm7253 17 63627617 to 63627954 337 - pseudogene predicted gene 7253
D17Mit89 17 63639035 to 63639149 114 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 89
Gm9300 17 63701836 to 63702490 654 - pseudogene predicted gene 9300
Tssr149036 17 63702572 to 63702573 1 - TSS region transcription start site region 149036
Tssr145542 17 63829935 to 63829950 15 + TSS region transcription start site region 145542
Cpgi9411 17 63849493 to 63849933 440 CpG island CpG island 9411
Tssr145543 17 63863041 to 63863080 39 + TSS region transcription start site region 145543
Fer 17 63863062 to 64139496 276434 + protein coding gene fer (fms/fps related) protein kinase
Cpgi9412 17 63863063 to 63864686 1623 CpG island CpG island 9412
Tssr145544 17 63863119 to 63863143 24 + TSS region transcription start site region 145544
A930002H24Rik 17 63863300 to 63863791 491 - unclassified gene RIKEN cDNA A930002H24 gene
Tssr145545 17 63863972 to 63864038 66 + TSS region transcription start site region 145545
Tssr145546 17 63864041 to 63864052 11 + TSS region transcription start site region 145546
D130052P04Rik 17 63871393 to 63875436 4043 unclassified gene RIKEN cDNA D130052P04 gene
Tssr145547 17 63896051 to 63896063 12 + TSS region transcription start site region 145547
Cpgi9413 17 63937885 to 63938065 180 CpG island CpG island 9413
Tssr145548 17 63937951 to 63937972 21 + TSS region transcription start site region 145548
1110058D11Rik 17 64049862 to 64050672 810 - lncRNA gene RIKEN cDNA 1110058D11 gene
Tssr145549 17 64078899 to 64078919 20 + TSS region transcription start site region 145549
Tssr5188 17 64100435 to 64100463 28 + TSS region transcription start site region 5188
Gm46590 17 64122052 to 64133429 11377 - lncRNA gene predicted gene, 46590
Rpl36-ps6 17 64192722 to 64192999 277 + pseudogene ribosomal protein L36, pseudogene 6
Cpgi9414 17 64212247 to 64212486 239 CpG island CpG island 9414
4930435F05Rik 17 64265071 to 64269692 4621 - lncRNA gene RIKEN cDNA 4930435F05 gene
Gm34858 17 64267675 to 64276669 8994 + lncRNA gene predicted gene, 34858
Tssr149037 17 64269695 to 64269713 18 - TSS region transcription start site region 149037
Tssr145550 17 64269856 to 64269872 16 + TSS region transcription start site region 145550
Pja2 17 64281006 to 64331883 50877 - protein coding gene praja ring finger ubiquitin ligase 2
D17Ium1 17 64284941 to 64285167 226 DNA segment DNA segment, Chr 17, Indiana University Medical 1
Tssr149038 17 64290045 to 64290047 2 - TSS region transcription start site region 149038
Tssr149039 17 64309307 to 64309320 13 - TSS region transcription start site region 149039
Tssr149040 17 64311299 to 64311328 29 - TSS region transcription start site region 149040
Gm24194 17 64321526 to 64321615 89 - miRNA gene predicted gene, 24194
Cpgi9415 17 64331272 to 64332562 1290 CpG island CpG island 9415
Tssr149041 17 64331817 to 64331957 140 - TSS region transcription start site region 149041
Tssr149042 17 64331965 to 64331977 12 - TSS region transcription start site region 149042
Tssr145551 17 64332406 to 64332417 11 + TSS region transcription start site region 145551
Mir6420 17 64440806 to 64440907 101 + miRNA gene microRNA 6420
D17Mit118 17 64481051 to 64481250 199 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 118
AU016765 17 64514089 to 64555590 41501 - lincRNA gene expressed sequence AU016765
Gm35098 17 64528846 to 64530635 1789 + lncRNA gene predicted gene, 35098
Cpgi9416 17 64600376 to 64602212 1836 CpG island CpG island 9416
Tssr145552 17 64600487 to 64600496 9 + TSS region transcription start site region 145552
Tssr145553 17 64600702 to 64600739 37 + TSS region transcription start site region 145553
Tssr145554 17 64600740 to 64600764 24 + TSS region transcription start site region 145554
Tssr145555 17 64600768 to 64600780 12 + TSS region transcription start site region 145555
Tssr145556 17 64600786 to 64600793 7 + TSS region transcription start site region 145556
Tssr145557 17 64601243 to 64601260 17 + TSS region transcription start site region 145557
Tssr145558 17 64601281 to 64601293 12 + TSS region transcription start site region 145558
Tssr145559 17 64601367 to 64601386 19 + TSS region transcription start site region 145559
Tssr145560 17 64601395 to 64601415 20 + TSS region transcription start site region 145560
Man2a1 17 64601649 to 64755110 153461 + protein coding gene mannosidase 2, alpha 1
Tssr149043 17 64602110 to 64602156 46 - TSS region transcription start site region 149043
Tssr145561 17 64634492 to 64634497 5 + TSS region transcription start site region 145561
Tssr145562 17 64634556 to 64634560 4 + TSS region transcription start site region 145562
Tssr145563 17 64677997 to 64677999 2 + TSS region transcription start site region 145563
Tssr145564 17 64717053 to 64717058 5 + TSS region transcription start site region 145564
Tssr145565 17 64719163 to 64719166 3 + TSS region transcription start site region 145565
Tssr145566 17 64721751 to 64721755 4 + TSS region transcription start site region 145566
D17Mit254 17 64737361 to 64737484 123 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 254
Gm17133 17 64748850 to 64754096 5246 - antisense lncRNA gene predicted gene 17133
Tssr145567 17 64753463 to 64753485 22 + TSS region transcription start site region 145567
Tssr145568 17 64755567 to 64755576 9 + TSS region transcription start site region 145568
Dreh 17 64767111 to 64767931 820 + lincRNA gene down-regulated in hepatocellular carcinoma
4930583I09Rik 17 64832523 to 64836071 3548 - protein coding gene RIKEN cDNA 4930583I09 gene
D17Mit151 17 64833045 to 64833168 123 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 151
Gm4701 17 64876201 to 64876924 723 + pseudogene predicted gene 4701
Tssr145569 17 64895806 to 64895822 16 + TSS region transcription start site region 145569
D17Mit90 17 64905346 to 64905591 245 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 90
Gm25344 17 64944721 to 64944852 131 - snoRNA gene predicted gene, 25344