Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:60044367-63204468

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm29051 17 60001418 to 60130875 129457 - lincRNA gene predicted gene 29051
Gm23447 17 60486007 to 60486169 162 + snRNA gene predicted gene, 23447
Gm4512 17 60490542 to 60491053 511 + pseudogene predicted gene 4512
Gm18521 17 60615767 to 60616592 825 - pseudogene predicted gene, 18521
Tssr145533 17 60644716 to 60644718 2 + TSS region transcription start site region 145533
D17Dcr15 17 60692968 to 60693071 103 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 15
Gm49856 17 60739233 to 60739578 345 + pseudogene predicted gene, 49856
Gm33890 17 60943979 to 60958946 14967 - lincRNA gene predicted gene, 33890
Gm18070 17 61016618 to 61017365 747 + pseudogene predicted gene, 18070
D17Dcr16 17 61217127 to 61217223 96 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 16
D17Dcr26 17 61230412 to 61230516 104 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 26
Gm23773 17 61259651 to 61259946 295 + unclassified non-coding RNA gene predicted gene, 23773
D17Dcr17 17 61293418 to 61293523 105 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 17
Obox6-ps1 17 61360573 to 61361614 1041 + pseudogene oocyte specific homeobox 6, pseudogene 1
Gm6174 17 61397310 to 61398246 936 + pseudogene predicted gene 6174
Gm34038 17 61477708 to 61496137 18429 + lncRNA gene predicted gene, 34038
D17Dcr27 17 61497532 to 61497632 100 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 27
D17Dcr28 17 61507343 to 61507440 97 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 28
D17Dcr18 17 61563341 to 61563439 98 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 18
D17Dcr29 17 61623880 to 61623984 104 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 29
D17Dcr30 17 61624367 to 61624468 101 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 30
D17Dcr19 17 61710388 to 61710486 98 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 19
Gm4518 17 61780915 to 61781632 717 - pseudogene predicted gene 4518
Tssr145534 17 61781609 to 61781611 2 + TSS region transcription start site region 145534
Gm27023 17 61781683 to 61781967 284 + pseudogene predicted gene, 27023
Gm49859 17 61872375 to 61872654 279 + pseudogene predicted gene, 49859
D17Dcr20 17 61923813 to 61923915 102 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 20
D17Mit4 17 61955078 to 61955175 97 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 4
Gm49860 17 62384258 to 62436057 51799 - lincRNA gene predicted gene, 49860
Gm25800 17 62456987 to 62457120 133 - snoRNA gene predicted gene, 25800
Efna5 17 62604184 to 62881317 277133 - protein coding gene ephrin A5
Tssr148986 17 62604956 to 62604958 2 - TSS region transcription start site region 148986
Tssr148987 17 62606679 to 62606682 3 - TSS region transcription start site region 148987
Tssr148988 17 62609954 to 62609960 6 - TSS region transcription start site region 148988
Tssr148989 17 62627930 to 62627935 5 - TSS region transcription start site region 148989
Tssr148990 17 62649683 to 62649688 5 - TSS region transcription start site region 148990
BC016608 17 62685589 to 62686988 1399 unclassified gene cDNA sequence BC016608
3222402N08Rik 17 62726952 to 62730291 3339 unclassified gene RIKEN cDNA 3222402N08 gene
Tssr148991 17 62733716 to 62733720 4 - TSS region transcription start site region 148991
Tssr148992 17 62734076 to 62734080 4 - TSS region transcription start site region 148992
D17Mit183 17 62740500 to 62740733 233 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 183
Tssr148993 17 62761139 to 62761144 5 - TSS region transcription start site region 148993
Tssr148994 17 62770897 to 62770903 6 - TSS region transcription start site region 148994
Tssr5187 17 62780079 to 62780122 43 - TSS region transcription start site region 5187
Tssr148995 17 62780323 to 62780346 23 - TSS region transcription start site region 148995
Tssr148996 17 62784058 to 62784063 5 - TSS region transcription start site region 148996
Gm46583 17 62786113 to 62790633 4520 - lncRNA gene predicted gene, 46583
Tssr148997 17 62803202 to 62803203 1 - TSS region transcription start site region 148997
Tssr148998 17 62815104 to 62815112 8 - TSS region transcription start site region 148998
Tssr148999 17 62816080 to 62816088 8 - TSS region transcription start site region 148999
Cpgi9408 17 62822940 to 62823170 230 CpG island CpG island 9408
3110005L21Rik 17 62838474 to 62840047 1573 unclassified gene RIKEN cDNA 3110005L21 gene
6430537K16Rik 17 62844253 to 62849408 5155 unclassified gene RIKEN cDNA 6430537K16 gene
Tssr149000 17 62855903 to 62855907 4 - TSS region transcription start site region 149000
C530014P21Rik 17 62858262 to 62863238 4976 unclassified gene RIKEN cDNA C530014P21 gene
Tssr149001 17 62858364 to 62858380 16 - TSS region transcription start site region 149001
Tssr149002 17 62870144 to 62870146 2 - TSS region transcription start site region 149002
Cpgi9409 17 62879666 to 62884377 4711 CpG island CpG island 9409
Tssr149003 17 62880870 to 62880885 15 - TSS region transcription start site region 149003
Tssr149004 17 62881252 to 62881353 101 - TSS region transcription start site region 149004
Tssr149005 17 62881392 to 62881458 66 - TSS region transcription start site region 149005
Tssr149006 17 62881677 to 62881729 52 - TSS region transcription start site region 149006
Tssr149007 17 62882101 to 62882173 72 - TSS region transcription start site region 149007
Tssr149008 17 62882426 to 62882460 34 - TSS region transcription start site region 149008
Tssr149009 17 62882663 to 62882692 29 - TSS region transcription start site region 149009
Tssr149010 17 62882711 to 62882723 12 - TSS region transcription start site region 149010
Tssr149011 17 62882842 to 62882895 53 - TSS region transcription start site region 149011
Tssr149012 17 62882983 to 62883036 53 - TSS region transcription start site region 149012
Tssr145535 17 62883393 to 62883399 6 + TSS region transcription start site region 145535
Gm34179 17 62938862 to 62939413 551 - lncRNA gene predicted gene, 34179
Tssr145536 17 62941048 to 62941056 8 + TSS region transcription start site region 145536
D17Mit253 17 62941706 to 62941936 230 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 253
Gm34230 17 63025837 to 63039203 13366 + lncRNA gene predicted gene, 34230
Gm34324 17 63041384 to 63046049 4665 + lncRNA gene predicted gene, 34324
Tssr145537 17 63044786 to 63044787 1 + TSS region transcription start site region 145537
Fbxl17 17 63057452 to 63500017 442565 - protein coding gene F-box and leucine-rich repeat protein 17
Gm25348 17 63096890 to 63097000 110 - rRNA gene predicted gene, 25348
Tssr149013 17 63141168 to 63141172 4 - TSS region transcription start site region 149013
Gm24730 17 63202738 to 63202854 116 + snoRNA gene predicted gene, 24730