Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:5995203-6546085

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
l17J1 17 3924615 to 6096434 2171819 heritable phenotypic marker lethal, Chr 17, Jackson 1
l17J2 17 3924615 to 6096434 2171819 heritable phenotypic marker lethal, Chr 17, Jackson 2
Synj2 17 5941280 to 6044290 103010 + protein coding gene synaptojanin 2
Tssr142451 17 5996838 to 5996864 26 + TSS region transcription start site region 142451
Tssr142452 17 6005539 to 6005550 11 + TSS region transcription start site region 142452
Tssr4986 17 6006476 to 6006487 11 + TSS region transcription start site region 4986
Tssr142453 17 6006490 to 6006499 9 + TSS region transcription start site region 142453
Tssr146310 17 6007480 to 6007484 4 - TSS region transcription start site region 146310
Tssr142454 17 6007593 to 6007624 31 + TSS region transcription start site region 142454
Tssr4987 17 6008060 to 6008069 9 - TSS region transcription start site region 4987
Tssr146311 17 6008727 to 6008765 38 - TSS region transcription start site region 146311
Gm46591 17 6032077 to 6036358 4281 - lncRNA gene predicted gene, 46591
Serac1 17 6042196 to 6079741 37545 - protein coding gene serine active site containing 1
Cpgi8567 17 6079303 to 6080161 858 CpG island CpG island 8567
Tssr146312 17 6079693 to 6079760 67 - TSS region transcription start site region 146312
Tssr142455 17 6079821 to 6079892 71 + TSS region transcription start site region 142455
Gtf2h5 17 6079828 to 6085488 5660 + protein coding gene general transcription factor IIH, polypeptide 5
Tssr142456 17 6079899 to 6079908 9 + TSS region transcription start site region 142456
Tssr142457 17 6079928 to 6079939 11 + TSS region transcription start site region 142457
D17Mit172 17 6096332 to 6096434 102 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 172
Tssr146313 17 6106278 to 6106307 29 - TSS region transcription start site region 146313
Cpgi8568 17 6106352 to 6107555 1203 CpG island CpG island 8568
Tssr142458 17 6106464 to 6106482 18 + TSS region transcription start site region 142458
Tssr146314 17 6106475 to 6106488 13 - TSS region transcription start site region 146314
Tssr146315 17 6106489 to 6106539 50 - TSS region transcription start site region 146315
Tssr142459 17 6106521 to 6106563 42 + TSS region transcription start site region 142459
Tssr142460 17 6106564 to 6106600 36 + TSS region transcription start site region 142460
Tssr142461 17 6106608 to 6106617 9 + TSS region transcription start site region 142461
Tssr142462 17 6106808 to 6106819 11 + TSS region transcription start site region 142462
Tssr142463 17 6106824 to 6106838 14 + TSS region transcription start site region 142463
Tulp4 17 6106828 to 6240637 133809 + protein coding gene tubby like protein 4
Tssr142464 17 6106850 to 6106875 25 + TSS region transcription start site region 142464
Tssr142465 17 6106880 to 6106907 27 + TSS region transcription start site region 142465
Tssr142466 17 6106908 to 6106922 14 + TSS region transcription start site region 142466
Tssr142467 17 6107134 to 6107162 28 + TSS region transcription start site region 142467
Tssr4988 17 6107270 to 6107291 21 + TSS region transcription start site region 4988
Gm5812 17 6121208 to 6122164 956 - pseudogene predicted gene 5812
Tssr146316 17 6122160 to 6122203 43 - TSS region transcription start site region 146316
Tssr142468 17 6128366 to 6128375 9 + TSS region transcription start site region 142468
Gm22774 17 6131836 to 6131944 108 - miRNA gene predicted gene, 22774
Gm15590 17 6131854 to 6132405 551 - pseudogene predicted gene 15590
n-R5s26 17 6147419 to 6147540 121 + rRNA gene nuclear encoded rRNA 5S 26
Tssr142469 17 6158763 to 6158767 4 + TSS region transcription start site region 142469
Gm17881 17 6225433 to 6226458 1025 + pseudogene predicted gene, 17881
Tssr4989 17 6241214 to 6241215 1 - TSS region transcription start site region 4989
Tssr4990 17 6253789 to 6253802 13 + TSS region transcription start site region 4990
Ppp1r2-ps6 17 6253903 to 6254523 620 + pseudogene protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 6
Cpgi8569 17 6256833 to 6257131 298 CpG island CpG island 8569
Tssr142470 17 6256837 to 6256858 21 + TSS region transcription start site region 142470
Tmem181a 17 6256862 to 6308314 51452 + protein coding gene transmembrane protein 181A
Tssr142471 17 6256890 to 6256938 48 + TSS region transcription start site region 142471
Cpgi8570 17 6270203 to 6271085 882 CpG island CpG island 8570
Tssr142472 17 6270456 to 6270508 52 + TSS region transcription start site region 142472
Tssr4991 17 6296729 to 6296732 3 + TSS region transcription start site region 4991
Dynlt1a 17 6306344 to 6317474 11130 - protein coding gene dynein light chain Tctex-type 1A
Tssr4992 17 6307993 to 6307996 3 + TSS region transcription start site region 4992
Gm26848 17 6314199 to 6493180 178981 + lincRNA gene predicted gene, 26848
Cpgi8571 17 6316777 to 6317051 274 CpG island CpG island 8571
Tssr146317 17 6317417 to 6317441 24 - TSS region transcription start site region 146317
Tssr146318 17 6317482 to 6317517 35 - TSS region transcription start site region 146318
Ppp1r2-ps1 17 6324025 to 6324642 617 - pseudogene protein phosphatase 1, regulatory inhibitor subunit 2, pseudogene 1
Gm2792 17 6339404 to 6358796 19392 - pseudogene predicted gene 2792
Gm49693 17 6354689 to 6355526 837 - pseudogene predicted gene, 49693
Gm29719 17 6369098 to 6427100 58002 - unclassified non-coding RNA gene predicted gene, 29719
Dynlt1b 17 6430112 to 6436296 6184 + protein coding gene dynein light chain Tctex-type 1B
Tssr142473 17 6430167 to 6430204 37 + TSS region transcription start site region 142473
Tmem181b-ps 17 6439002 to 6450994 11992 - pseudogene transmembrane protein 181B, pseudogene
Ppp1r2-ps5 17 6492191 to 6494321 2130 - pseudogene protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 5
Gm2808 17 6511791 to 6528713 16922 - protein coding gene predicted gene 2808
Gm17880 17 6521528 to 6522546 1018 - pseudogene predicted gene, 17880
Gm29721 17 6535892 to 6582703 46811 - protein coding gene predicted gene, 29721