Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:5961521-6251563

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51 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
l17J1 17 3924615 to 6096434 2171819 heritable phenotypic marker lethal, Chr 17, Jackson 1
l17J2 17 3924615 to 6096434 2171819 heritable phenotypic marker lethal, Chr 17, Jackson 2
Synj2 17 5941280 to 6044290 103010 + protein coding gene synaptojanin 2
Tssr142447 17 5975705 to 5975732 27 + TSS region transcription start site region 142447
Tssr142448 17 5975747 to 5975759 12 + TSS region transcription start site region 142448
Tssr142449 17 5975802 to 5975830 28 + TSS region transcription start site region 142449
Tssr142450 17 5975967 to 5975986 19 + TSS region transcription start site region 142450
Gm35525 17 5982759 to 5989008 6249 - lncRNA gene predicted gene, 35525
Tssr146309 17 5988191 to 5988201 10 - TSS region transcription start site region 146309
Tssr142451 17 5996838 to 5996864 26 + TSS region transcription start site region 142451
Tssr142452 17 6005539 to 6005550 11 + TSS region transcription start site region 142452
Tssr4986 17 6006476 to 6006487 11 + TSS region transcription start site region 4986
Tssr142453 17 6006490 to 6006499 9 + TSS region transcription start site region 142453
Tssr146310 17 6007480 to 6007484 4 - TSS region transcription start site region 146310
Tssr142454 17 6007593 to 6007624 31 + TSS region transcription start site region 142454
Tssr4987 17 6008060 to 6008069 9 - TSS region transcription start site region 4987
Tssr146311 17 6008727 to 6008765 38 - TSS region transcription start site region 146311
Gm46591 17 6032077 to 6036358 4281 - lncRNA gene predicted gene, 46591
Serac1 17 6042196 to 6079741 37545 - protein coding gene serine active site containing 1
Cpgi8567 17 6079303 to 6080161 858 CpG island CpG island 8567
Tssr146312 17 6079693 to 6079760 67 - TSS region transcription start site region 146312
Tssr142455 17 6079821 to 6079892 71 + TSS region transcription start site region 142455
Gtf2h5 17 6079828 to 6085488 5660 + protein coding gene general transcription factor IIH, polypeptide 5
Tssr142456 17 6079899 to 6079908 9 + TSS region transcription start site region 142456
Tssr142457 17 6079928 to 6079939 11 + TSS region transcription start site region 142457
D17Mit172 17 6096332 to 6096434 102 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 172
Tssr146313 17 6106278 to 6106307 29 - TSS region transcription start site region 146313
Cpgi8568 17 6106352 to 6107555 1203 CpG island CpG island 8568
Tssr142458 17 6106464 to 6106482 18 + TSS region transcription start site region 142458
Tssr146314 17 6106475 to 6106488 13 - TSS region transcription start site region 146314
Tssr146315 17 6106489 to 6106539 50 - TSS region transcription start site region 146315
Tssr142459 17 6106521 to 6106563 42 + TSS region transcription start site region 142459
Tssr142460 17 6106564 to 6106600 36 + TSS region transcription start site region 142460
Tssr142461 17 6106608 to 6106617 9 + TSS region transcription start site region 142461
Tssr142462 17 6106808 to 6106819 11 + TSS region transcription start site region 142462
Tssr142463 17 6106824 to 6106838 14 + TSS region transcription start site region 142463
Tulp4 17 6106828 to 6240637 133809 + protein coding gene tubby like protein 4
Tssr142464 17 6106850 to 6106875 25 + TSS region transcription start site region 142464
Tssr142465 17 6106880 to 6106907 27 + TSS region transcription start site region 142465
Tssr142466 17 6106908 to 6106922 14 + TSS region transcription start site region 142466
Tssr142467 17 6107134 to 6107162 28 + TSS region transcription start site region 142467
Tssr4988 17 6107270 to 6107291 21 + TSS region transcription start site region 4988
Gm5812 17 6121208 to 6122164 956 - pseudogene predicted gene 5812
Tssr146316 17 6122160 to 6122203 43 - TSS region transcription start site region 146316
Tssr142468 17 6128366 to 6128375 9 + TSS region transcription start site region 142468
Gm22774 17 6131836 to 6131944 108 - miRNA gene predicted gene, 22774
Gm15590 17 6131854 to 6132405 551 - pseudogene predicted gene 15590
n-R5s26 17 6147419 to 6147540 121 + rRNA gene nuclear encoded rRNA 5S 26
Tssr142469 17 6158763 to 6158767 4 + TSS region transcription start site region 142469
Gm17881 17 6225433 to 6226458 1025 + pseudogene predicted gene, 17881
Tssr4989 17 6241214 to 6241215 1 - TSS region transcription start site region 4989