Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:5889716-7963356

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222 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
l17J2 17 3924615 to 6096434 2171819 heritable phenotypic marker lethal, Chr 17, Jackson 2
l17J1 17 3924615 to 6096434 2171819 heritable phenotypic marker lethal, Chr 17, Jackson 1
Snx9 17 5841380 to 5931956 90576 + protein coding gene sorting nexin 9
Tssr142444 17 5898101 to 5898105 4 + TSS region transcription start site region 142444
Tssr142445 17 5926927 to 5926963 36 + TSS region transcription start site region 142445
Gm46599 17 5928306 to 5929351 1045 + lncRNA gene predicted gene, 46599
Cpgi8564 17 5934778 to 5935199 421 CpG island CpG island 8564
D17Mit196 17 5936872 to 5936967 95 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 196
Gm8376 17 5939085 to 5939646 561 + pseudogene predicted gene 8376
Cpgi8565 17 5940546 to 5942084 1538 CpG island CpG island 8565
Synj2 17 5941280 to 6044290 103010 + protein coding gene synaptojanin 2
Tssr142446 17 5941346 to 5941413 67 + TSS region transcription start site region 142446
Cpgi8566 17 5949296 to 5949745 449 CpG island CpG island 8566
Tssr142447 17 5975705 to 5975732 27 + TSS region transcription start site region 142447
Tssr142448 17 5975747 to 5975759 12 + TSS region transcription start site region 142448
Tssr142449 17 5975802 to 5975830 28 + TSS region transcription start site region 142449
Tssr142450 17 5975967 to 5975986 19 + TSS region transcription start site region 142450
Gm35525 17 5982759 to 5989008 6249 - lncRNA gene predicted gene, 35525
Tssr146309 17 5988191 to 5988201 10 - TSS region transcription start site region 146309
Tssr142451 17 5996838 to 5996864 26 + TSS region transcription start site region 142451
Tssr142452 17 6005539 to 6005550 11 + TSS region transcription start site region 142452
Tssr4986 17 6006476 to 6006487 11 + TSS region transcription start site region 4986
Tssr142453 17 6006490 to 6006499 9 + TSS region transcription start site region 142453
Tssr146310 17 6007480 to 6007484 4 - TSS region transcription start site region 146310
Tssr142454 17 6007593 to 6007624 31 + TSS region transcription start site region 142454
Tssr4987 17 6008060 to 6008069 9 - TSS region transcription start site region 4987
Tssr146311 17 6008727 to 6008765 38 - TSS region transcription start site region 146311
Gm46591 17 6032077 to 6036358 4281 - lncRNA gene predicted gene, 46591
Serac1 17 6042196 to 6079741 37545 - protein coding gene serine active site containing 1
Cpgi8567 17 6079303 to 6080161 858 CpG island CpG island 8567
Tssr146312 17 6079693 to 6079760 67 - TSS region transcription start site region 146312
Tssr142455 17 6079821 to 6079892 71 + TSS region transcription start site region 142455
Gtf2h5 17 6079828 to 6085488 5660 + protein coding gene general transcription factor IIH, polypeptide 5
Tssr142456 17 6079899 to 6079908 9 + TSS region transcription start site region 142456
Tssr142457 17 6079928 to 6079939 11 + TSS region transcription start site region 142457
D17Mit172 17 6096332 to 6096434 102 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 172
Tssr146313 17 6106278 to 6106307 29 - TSS region transcription start site region 146313
Cpgi8568 17 6106352 to 6107555 1203 CpG island CpG island 8568
Tssr142458 17 6106464 to 6106482 18 + TSS region transcription start site region 142458
Tssr146314 17 6106475 to 6106488 13 - TSS region transcription start site region 146314
Tssr146315 17 6106489 to 6106539 50 - TSS region transcription start site region 146315
Tssr142459 17 6106521 to 6106563 42 + TSS region transcription start site region 142459
Tssr142460 17 6106564 to 6106600 36 + TSS region transcription start site region 142460
Tssr142461 17 6106608 to 6106617 9 + TSS region transcription start site region 142461
Tssr142462 17 6106808 to 6106819 11 + TSS region transcription start site region 142462
Tssr142463 17 6106824 to 6106838 14 + TSS region transcription start site region 142463
Tulp4 17 6106828 to 6240637 133809 + protein coding gene tubby like protein 4
Tssr142464 17 6106850 to 6106875 25 + TSS region transcription start site region 142464
Tssr142465 17 6106880 to 6106907 27 + TSS region transcription start site region 142465
Tssr142466 17 6106908 to 6106922 14 + TSS region transcription start site region 142466
Tssr142467 17 6107134 to 6107162 28 + TSS region transcription start site region 142467
Tssr4988 17 6107270 to 6107291 21 + TSS region transcription start site region 4988
Gm5812 17 6121208 to 6122164 956 - pseudogene predicted gene 5812
Tssr146316 17 6122160 to 6122203 43 - TSS region transcription start site region 146316
Tssr142468 17 6128366 to 6128375 9 + TSS region transcription start site region 142468
Gm22774 17 6131836 to 6131944 108 - miRNA gene predicted gene, 22774
Gm15590 17 6131854 to 6132405 551 - pseudogene predicted gene 15590
n-R5s26 17 6147419 to 6147540 121 + rRNA gene nuclear encoded rRNA 5S 26
Tssr142469 17 6158763 to 6158767 4 + TSS region transcription start site region 142469
Gm17881 17 6225433 to 6226458 1025 + pseudogene predicted gene, 17881
Tssr4989 17 6241214 to 6241215 1 - TSS region transcription start site region 4989
Tssr4990 17 6253789 to 6253802 13 + TSS region transcription start site region 4990
Ppp1r2-ps6 17 6253903 to 6254523 620 + pseudogene protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 6
Cpgi8569 17 6256833 to 6257131 298 CpG island CpG island 8569
Tssr142470 17 6256837 to 6256858 21 + TSS region transcription start site region 142470
Tmem181a 17 6256862 to 6308314 51452 + protein coding gene transmembrane protein 181A
Tssr142471 17 6256890 to 6256938 48 + TSS region transcription start site region 142471
Cpgi8570 17 6270203 to 6271085 882 CpG island CpG island 8570
Tssr142472 17 6270456 to 6270508 52 + TSS region transcription start site region 142472
Tssr4991 17 6296729 to 6296732 3 + TSS region transcription start site region 4991
Dynlt1a 17 6306344 to 6317474 11130 - protein coding gene dynein light chain Tctex-type 1A
Tssr4992 17 6307993 to 6307996 3 + TSS region transcription start site region 4992
Gm26848 17 6314199 to 6493180 178981 + lincRNA gene predicted gene, 26848
Cpgi8571 17 6316777 to 6317051 274 CpG island CpG island 8571
Tssr146317 17 6317417 to 6317441 24 - TSS region transcription start site region 146317
Tssr146318 17 6317482 to 6317517 35 - TSS region transcription start site region 146318
Ppp1r2-ps1 17 6324025 to 6324642 617 - pseudogene protein phosphatase 1, regulatory inhibitor subunit 2, pseudogene 1
Gm2792 17 6339404 to 6358796 19392 - pseudogene predicted gene 2792
Gm49693 17 6354689 to 6355526 837 - pseudogene predicted gene, 49693
Gm29719 17 6369098 to 6427100 58002 - unclassified non-coding RNA gene predicted gene, 29719
Dynlt1b 17 6430112 to 6436296 6184 + protein coding gene dynein light chain Tctex-type 1B
Tssr142473 17 6430167 to 6430204 37 + TSS region transcription start site region 142473
Tmem181b-ps 17 6439002 to 6450994 11992 - pseudogene transmembrane protein 181B, pseudogene
Ppp1r2-ps5 17 6492191 to 6494321 2130 - pseudogene protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 5
Gm2808 17 6511791 to 6528713 16922 - protein coding gene predicted gene 2808
Gm17880 17 6521528 to 6522546 1018 - pseudogene predicted gene, 17880
Gm29721 17 6535892 to 6582703 46811 - protein coding gene predicted gene, 29721
Dynlt1c 17 6601779 to 6607891 6112 + protein coding gene dynein light chain Tctex-type 1C
Tmem181c-ps 17 6610103 to 6620925 10822 - pseudogene transmembrane protein 181C, pseudogene
Dynlt1f 17 6646602 to 6655900 9298 - protein coding gene dynein light chain Tctex-type 1F
Tssr4993 17 6659053 to 6659083 30 + TSS region transcription start site region 4993
Sytl3 17 6659093 to 6738044 78951 + protein coding gene synaptotagmin-like 3
Tssr142474 17 6659181 to 6659186 5 + TSS region transcription start site region 142474
Gm36309 17 6716001 to 6728327 12326 - lncRNA gene predicted gene, 36309
Tssr142475 17 6730223 to 6730261 38 + TSS region transcription start site region 142475
Ezr 17 6738131 to 6782780 44649 - protein coding gene ezrin
Tssr146319 17 6739803 to 6739830 27 - TSS region transcription start site region 146319
Tssr4994 17 6741235 to 6741257 22 - TSS region transcription start site region 4994
Tssr142476 17 6742352 to 6742376 24 + TSS region transcription start site region 142476
Tssr4995 17 6743277 to 6743288 11 + TSS region transcription start site region 4995
Tssr146320 17 6743809 to 6743820 11 - TSS region transcription start site region 146320
Tssr146321 17 6743838 to 6743846 8 - TSS region transcription start site region 146321
Tssr146322 17 6745991 to 6746029 38 - TSS region transcription start site region 146322
Tssr142477 17 6746286 to 6746292 6 + TSS region transcription start site region 142477
Tssr142478 17 6746309 to 6746316 7 + TSS region transcription start site region 142478
Tssr146323 17 6746813 to 6746820 7 - TSS region transcription start site region 146323
Tssr146324 17 6746859 to 6746868 9 - TSS region transcription start site region 146324
Tssr146325 17 6746887 to 6746892 5 - TSS region transcription start site region 146325
Tssr146326 17 6754718 to 6754744 26 - TSS region transcription start site region 146326
Tssr146327 17 6754827 to 6754838 11 - TSS region transcription start site region 146327
Tssr146328 17 6756019 to 6756030 11 - TSS region transcription start site region 146328
Tssr146329 17 6756090 to 6756103 13 - TSS region transcription start site region 146329
Tssr146330 17 6756943 to 6756951 8 - TSS region transcription start site region 146330
Tssr146331 17 6757444 to 6757446 2 - TSS region transcription start site region 146331
D17Mit1003 17 6762584 to 6762702 118 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 1003
Tssr146332 17 6778340 to 6778344 4 - TSS region transcription start site region 146332
Cpgi8572 17 6782047 to 6783638 1591 CpG island CpG island 8572
Tssr146333 17 6782746 to 6782762 16 - TSS region transcription start site region 146333
Tssr146334 17 6782775 to 6782784 9 - TSS region transcription start site region 146334
Tssr142479 17 6782851 to 6782877 26 + TSS region transcription start site region 142479
Tssr146335 17 6784444 to 6784458 14 - TSS region transcription start site region 146335
Tssr146336 17 6785440 to 6785461 21 - TSS region transcription start site region 146336
Gm41521 17 6788164 to 6792489 4325 - lncRNA gene predicted gene, 41521
Gm49717 17 6790793 to 6791495 702 + pseudogene predicted gene, 49717
Gm2885 17 6798383 to 6807124 8741 - lincRNA gene predicted gene 2885
4933426B08Rik 17 6808509 to 6818529 10020 + lincRNA gene RIKEN cDNA 4933426B08 gene
Tssr142480 17 6816586 to 6816606 20 + TSS region transcription start site region 142480
Tssr146337 17 6827270 to 6827282 12 - TSS region transcription start site region 146337
Cpgi8573 17 6827533 to 6828501 968 CpG island CpG island 8573
Tssr146338 17 6827799 to 6827835 36 - TSS region transcription start site region 146338
Tssr146339 17 6827841 to 6827882 41 - TSS region transcription start site region 146339
Tssr4996 17 6827978 to 6827984 6 + TSS region transcription start site region 4996
Tssr146340 17 6827999 to 6828021 22 - TSS region transcription start site region 146340
Tssr142481 17 6828066 to 6828084 18 + TSS region transcription start site region 142481
Tssr142482 17 6828095 to 6828139 44 + TSS region transcription start site region 142482
Tssr142483 17 6828362 to 6828373 11 + TSS region transcription start site region 142483
Tssr142484 17 6828469 to 6828483 14 + TSS region transcription start site region 142484
Cpgi8574 17 6861573 to 6861998 425 CpG island CpG island 8574
Mir692-1 17 6895229 to 6895337 108 - miRNA gene microRNA 692-1
1700122H20Rik 17 6895940 to 6901718 5778 + antisense lncRNA gene RIKEN cDNA 1700122H20 gene
Tssr142485 17 6895952 to 6895963 11 + TSS region transcription start site region 142485
Rsph3b 17 6904716 to 6948356 43640 - protein coding gene radial spoke 3B homolog (Chlamydomonas)
Cpgi8575 17 6948068 to 6948424 356 CpG island CpG island 8575
Tssr146341 17 6948283 to 6948349 66 - TSS region transcription start site region 146341
Gm49719 17 6948446 to 6957196 8750 + antisense lncRNA gene predicted gene, 49719
Tssr146342 17 6948721 to 6948745 24 - TSS region transcription start site region 146342
Tagap1 17 6955011 to 6961156 6145 - protein coding gene T cell activation GTPase activating protein 1
Cpgi8576 17 6960869 to 6961060 191 CpG island CpG island 8576
Cpgi8577 17 6978451 to 6979133 682 CpG island CpG island 8577
Rnaset2b 17 6978860 to 6998193 19333 + protein coding gene ribonuclease T2B
Tssr142486 17 6978893 to 6978912 19 + TSS region transcription start site region 142486
Gm49721 17 6978904 to 7043950 65046 + protein coding gene predicted gene, 49721
Tssr142487 17 6978963 to 6978986 23 + TSS region transcription start site region 142487
D17Mit195a 17 6979430 to 6979508 78 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 195a
Tssr146343 17 6993251 to 6993265 14 - TSS region transcription start site region 146343
D17Mit98a 17 7022347 to 7022606 259 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 98a
Gm1604b 17 7025568 to 7087597 62029 + protein coding gene predicted gene 1604b
Gm25119 17 7042478 to 7042565 87 - snoRNA gene predicted gene, 25119
Tssr4997 17 7079245 to 7079272 27 + TSS region transcription start site region 4997
Tssr142488 17 7138438 to 7138451 13 + TSS region transcription start site region 142488
Tssr142489 17 7138463 to 7138483 20 + TSS region transcription start site region 142489
Tssr142490 17 7138495 to 7138502 7 + TSS region transcription start site region 142490
Cpgi8578 17 7169348 to 7170807 1459 CpG island CpG island 8578
Tssr146344 17 7169721 to 7169744 23 - TSS region transcription start site region 146344
Tssr146345 17 7169817 to 7169828 11 - TSS region transcription start site region 146345
Tssr142491 17 7170085 to 7170097 12 + TSS region transcription start site region 142491
Tssr142492 17 7170101 to 7170132 31 + TSS region transcription start site region 142492
Rps6ka2 17 7170115 to 7303315 133200 + protein coding gene ribosomal protein S6 kinase, polypeptide 2
Tssr142493 17 7170137 to 7170163 26 + TSS region transcription start site region 142493
D17Jcs90 17 7286943 to 7287138 195 DNA segment DNA segment, Chr 17, John C. Schimenti 90
Gpr31a 17 7314888 to 7315846 958 - pseudogene G protein-coupled receptor 31, D17Leh66a region
Tcp10a 17 7324657 to 7345860 21203 + protein coding gene t-complex protein 10a
Tssr142494 17 7324660 to 7324677 17 + TSS region transcription start site region 142494
Ttll2 17 7350885 to 7352696 1811 - protein coding gene tubulin tyrosine ligase-like family, member 2
Gm49630 17 7352064 to 7371979 19915 - protein coding gene predicted gene, 49630
Unc93a2 17 7362815 to 7385464 22649 - protein coding gene unc-93 homolog A2
Gm26057 17 7374193 to 7374357 164 - snRNA gene predicted gene, 26057
Tssr146346 17 7397300 to 7397308 8 - TSS region transcription start site region 146346
5830477G23Rik 17 7399524 to 7406609 7085 unclassified non-coding RNA gene RIKEN cDNA 5830477G23 gene
Gm36458 17 7411244 to 7416515 5271 - lncRNA gene predicted gene, 36458
Gm6553 17 7429287 to 7430242 955 - pseudogene predicted gene 6553
Tssr142495 17 7576142 to 7576154 12 + TSS region transcription start site region 142495
Gm33086 17 7576190 to 7578389 2199 + lincRNA gene predicted gene, 33086
Gm33158 17 7631809 to 7637736 5927 - lncRNA gene predicted gene, 33158
Tssr142496 17 7645295 to 7645303 8 + TSS region transcription start site region 142496
Gm49632 17 7645328 to 7660238 14910 + lincRNA gene predicted gene, 49632
D17Mit171 17 7657011 to 7657118 107 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 171
Gm25872 17 7704840 to 7704939 99 + miRNA gene predicted gene, 25872
Fndc1 17 7738569 to 7827302 88733 - protein coding gene fibronectin type III domain containing 1
Tssr146347 17 7765228 to 7765302 74 - TSS region transcription start site region 146347
Tssr146348 17 7765339 to 7765356 17 - TSS region transcription start site region 146348
Cpgi8579 17 7771262 to 7771549 287 CpG island CpG island 8579
Gm7140 17 7812660 to 7813540 880 + pseudogene predicted gene 7140
Cpgi8580 17 7826835 to 7827774 939 CpG island CpG island 8580
Tssr146349 17 7827289 to 7827310 21 - TSS region transcription start site region 146349
Cpgi8581 17 7827778 to 7827934 156 CpG island CpG island 8581
E430024P14Rik 17 7832241 to 7837272 5031 - antisense lncRNA gene RIKEN cDNA E430024P14 gene
Tssr146350 17 7871955 to 7871961 6 - TSS region transcription start site region 146350
Tssr146351 17 7874871 to 7874880 9 - TSS region transcription start site region 146351
Tssr142497 17 7875357 to 7875367 10 + TSS region transcription start site region 142497