Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:5840546-6042084

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi8560 17 5840833 to 5841144 311 CpG island CpG island 8560
Tssr142439 17 5841252 to 5841271 19 + TSS region transcription start site region 142439
Tssr142440 17 5841307 to 5841377 70 + TSS region transcription start site region 142440
Snx9 17 5841380 to 5931956 90576 + protein coding gene sorting nexin 9
Tssr142441 17 5841394 to 5841410 16 + TSS region transcription start site region 142441
Tssr142442 17 5841424 to 5841463 39 + TSS region transcription start site region 142442
Cpgi8561 17 5841552 to 5841967 415 CpG island CpG island 8561
Gm35474 17 5845712 to 5848354 2642 - lncRNA gene predicted gene, 35474
Cpgi8562 17 5849585 to 5849767 182 CpG island CpG island 8562
Tssr142443 17 5850786 to 5850800 14 + TSS region transcription start site region 142443
E130303B20Rik 17 5851040 to 5851953 913 unclassified gene RIKEN cDNA E130303B20 gene
Cpgi8563 17 5887004 to 5887161 157 CpG island CpG island 8563
Tssr142444 17 5898101 to 5898105 4 + TSS region transcription start site region 142444
Tssr142445 17 5926927 to 5926963 36 + TSS region transcription start site region 142445
Gm46599 17 5928306 to 5929351 1045 + lncRNA gene predicted gene, 46599
Cpgi8564 17 5934778 to 5935199 421 CpG island CpG island 8564
D17Mit196 17 5936872 to 5936967 95 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 196
Gm8376 17 5939085 to 5939646 561 + pseudogene predicted gene 8376
Cpgi8565 17 5940546 to 5942084 1538 CpG island CpG island 8565
Synj2 17 5941280 to 6044290 103010 + protein coding gene synaptojanin 2
Tssr142446 17 5941346 to 5941413 67 + TSS region transcription start site region 142446
Cpgi8566 17 5949296 to 5949745 449 CpG island CpG island 8566
Tssr142447 17 5975705 to 5975732 27 + TSS region transcription start site region 142447
Tssr142448 17 5975747 to 5975759 12 + TSS region transcription start site region 142448
Tssr142449 17 5975802 to 5975830 28 + TSS region transcription start site region 142449
Tssr142450 17 5975967 to 5975986 19 + TSS region transcription start site region 142450
Gm35525 17 5982759 to 5989008 6249 - lncRNA gene predicted gene, 35525
Tssr146309 17 5988191 to 5988201 10 - TSS region transcription start site region 146309
Tssr142451 17 5996838 to 5996864 26 + TSS region transcription start site region 142451
Tssr142452 17 6005539 to 6005550 11 + TSS region transcription start site region 142452
Tssr4986 17 6006476 to 6006487 11 + TSS region transcription start site region 4986
Tssr142453 17 6006490 to 6006499 9 + TSS region transcription start site region 142453
Tssr146310 17 6007480 to 6007484 4 - TSS region transcription start site region 146310
Tssr142454 17 6007593 to 6007624 31 + TSS region transcription start site region 142454
Tssr4987 17 6008060 to 6008069 9 - TSS region transcription start site region 4987
Tssr146311 17 6008727 to 6008765 38 - TSS region transcription start site region 146311
Gm46591 17 6032077 to 6036358 4281 - lncRNA gene predicted gene, 46591