Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:5794585-5904767

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26 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
3300005D01Rik 17 5798657 to 5803240 4583 + lincRNA gene RIKEN cDNA 3300005D01 gene
Tssr4985 17 5799487 to 5799499 12 + TSS region transcription start site region 4985
Tssr142433 17 5799597 to 5799614 17 + TSS region transcription start site region 142433
Tssr142434 17 5799616 to 5799649 33 + TSS region transcription start site region 142434
Tssr142435 17 5799660 to 5799678 18 + TSS region transcription start site region 142435
Tssr146307 17 5803335 to 5803362 27 - TSS region transcription start site region 146307
Tssr142436 17 5803910 to 5803923 13 + TSS region transcription start site region 142436
Tssr142437 17 5804621 to 5804633 12 + TSS region transcription start site region 142437
Tssr142438 17 5804655 to 5804661 6 + TSS region transcription start site region 142438
Gm10231 17 5816200 to 5816640 440 - pseudogene predicted pseudogene 10231
Tssr146308 17 5816699 to 5816701 2 - TSS region transcription start site region 146308
Gm26595 17 5817472 to 5817955 483 + pseudogene predicted gene, 26595
Gm26622 17 5837968 to 5838265 297 + pseudogene predicted gene, 26622
Cpgi8560 17 5840833 to 5841144 311 CpG island CpG island 8560
Tssr142439 17 5841252 to 5841271 19 + TSS region transcription start site region 142439
Tssr142440 17 5841307 to 5841377 70 + TSS region transcription start site region 142440
Snx9 17 5841380 to 5931956 90576 + protein coding gene sorting nexin 9
Tssr142441 17 5841394 to 5841410 16 + TSS region transcription start site region 142441
Tssr142442 17 5841424 to 5841463 39 + TSS region transcription start site region 142442
Cpgi8561 17 5841552 to 5841967 415 CpG island CpG island 8561
Gm35474 17 5845712 to 5848354 2642 - lncRNA gene predicted gene, 35474
Cpgi8562 17 5849585 to 5849767 182 CpG island CpG island 8562
Tssr142443 17 5850786 to 5850800 14 + TSS region transcription start site region 142443
E130303B20Rik 17 5851040 to 5851953 913 unclassified gene RIKEN cDNA E130303B20 gene
Cpgi8563 17 5887004 to 5887161 157 CpG island CpG island 8563
Tssr142444 17 5898101 to 5898105 4 + TSS region transcription start site region 142444