Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:57935347-59581041

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30 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cntnap5c 17 57769570 to 58410355 640785 + protein coding gene contactin associated protein-like 5C
D17Mit109 17 58103848 to 58103982 134 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 109
Gm49848 17 58462325 to 58462516 191 + pseudogene predicted gene, 49848
Cpgi9406 17 58567793 to 58568017 224 CpG island CpG island 9406
Gm6149 17 58579030 to 58579967 937 - pseudogene predicted gene 6149
Gm49849 17 58583092 to 58583635 543 + pseudogene predicted gene, 49849
Gm5815 17 58593614 to 58594840 1226 + pseudogene predicted pseudogene 5815
A330072L02Rik 17 58680347 to 58836041 155694 - lincRNA gene RIKEN cDNA A330072L02 gene
Gm9284 17 58803053 to 58803626 573 - pseudogene predicted gene 9284
Pdzph1 17 58878808 to 58991375 112567 - protein coding gene PDZ and pleckstrin homology domains 1
A930025A13Rik 17 58889209 to 58893212 4003 unclassified non-coding RNA gene RIKEN cDNA A930025A13 gene
Tssr148979 17 58908539 to 58908549 10 - TSS region transcription start site region 148979
Tssr148980 17 58932526 to 58932539 13 - TSS region transcription start site region 148980
Tssr148981 17 58934612 to 58934620 8 - TSS region transcription start site region 148981
Gm33751 17 58943933 to 58952582 8649 + lncRNA gene predicted gene, 33751
D17Mit150 17 58953961 to 58954073 112 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 150
Tssr148982 17 58991343 to 58991354 11 - TSS region transcription start site region 148982
Tssr148983 17 58991390 to 58991395 5 - TSS region transcription start site region 148983
Tssr145530 17 58996243 to 58996278 35 + TSS region transcription start site region 145530
Nudt12os 17 58996263 to 59024980 28717 + antisense lncRNA gene nudix (nucleoside diphosphate linked moiety X)-type motif 12, opposite strand
Nudt12 17 59000107 to 59013367 13260 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 12
Cpgi9407 17 59012930 to 59013358 428 CpG island CpG island 9407
Tssr148984 17 59013264 to 59013343 79 - TSS region transcription start site region 148984
Tssr5186 17 59040824 to 59040825 1 - TSS region transcription start site region 5186
n-TVcac3 17 59068708 to 59068780 72 + tRNA gene nuclear encoded tRNA valine 3 (anticodon CAC)
Tssr145531 17 59071376 to 59071378 2 + TSS region transcription start site region 145531
Gm23769 17 59225723 to 59225843 120 - snoRNA gene predicted gene, 23769
Tssr145532 17 59424719 to 59424721 2 + TSS region transcription start site region 145532
D17Mit1004 17 59455153 to 59455256 103 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 1004
Gm23203 17 59569559 to 59569665 106 - snRNA gene predicted gene, 23203