Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:57442793-59693017

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Adgre1 17 57358691 to 57483527 124836 + protein coding gene adhesion G protein-coupled receptor E1
Gm20243 17 57442265 to 57443890 1625 - pseudogene predicted gene, 20243
Tssr145489 17 57445023 to 57445035 12 + TSS region transcription start site region 145489
Tssr145490 17 57445060 to 57445076 16 + TSS region transcription start site region 145490
Tssr145491 17 57445081 to 57445094 13 + TSS region transcription start site region 145491
Tssr145492 17 57447819 to 57447906 87 + TSS region transcription start site region 145492
Tssr145493 17 57449857 to 57449915 58 + TSS region transcription start site region 145493
Tssr145494 17 57451355 to 57451380 25 + TSS region transcription start site region 145494
Tssr145495 17 57451399 to 57451423 24 + TSS region transcription start site region 145495
Tssr145496 17 57451495 to 57451510 15 + TSS region transcription start site region 145496
Tssr145497 17 57451595 to 57451609 14 + TSS region transcription start site region 145497
Tssr145498 17 57451612 to 57451627 15 + TSS region transcription start site region 145498
Tssr145499 17 57453507 to 57453529 22 + TSS region transcription start site region 145499
Tssr145500 17 57455866 to 57455890 24 + TSS region transcription start site region 145500
Tssr145501 17 57458885 to 57458897 12 + TSS region transcription start site region 145501
Tssr145502 17 57459918 to 57459949 31 + TSS region transcription start site region 145502
Tssr145503 17 57460001 to 57460016 15 + TSS region transcription start site region 145503
Tssr145504 17 57460026 to 57460036 10 + TSS region transcription start site region 145504
Tssr145505 17 57460042 to 57460082 40 + TSS region transcription start site region 145505
Tssr145506 17 57460709 to 57460730 21 + TSS region transcription start site region 145506
Tssr145507 17 57462760 to 57462778 18 + TSS region transcription start site region 145507
Tssr145508 17 57462898 to 57462913 15 + TSS region transcription start site region 145508
Tssr145509 17 57463367 to 57463391 24 + TSS region transcription start site region 145509
Tssr145510 17 57466243 to 57466256 13 + TSS region transcription start site region 145510
Tssr145511 17 57466308 to 57466323 15 + TSS region transcription start site region 145511
Tssr145512 17 57466682 to 57466722 40 + TSS region transcription start site region 145512
Tssr145513 17 57467300 to 57467316 16 + TSS region transcription start site region 145513
Tssr145514 17 57467385 to 57467397 12 + TSS region transcription start site region 145514
Tssr145515 17 57472560 to 57472579 19 + TSS region transcription start site region 145515
Tssr145516 17 57476152 to 57476213 61 + TSS region transcription start site region 145516
Tssr145517 17 57476295 to 57476315 20 + TSS region transcription start site region 145517
Tssr145518 17 57476322 to 57476358 36 + TSS region transcription start site region 145518
Tssr145519 17 57476401 to 57476425 24 + TSS region transcription start site region 145519
Tssr145520 17 57476659 to 57476675 16 + TSS region transcription start site region 145520
Tssr145521 17 57476678 to 57476708 30 + TSS region transcription start site region 145521
Tssr145522 17 57476795 to 57476816 21 + TSS region transcription start site region 145522
Tssr145523 17 57477206 to 57477218 12 + TSS region transcription start site region 145523
Tssr145524 17 57477238 to 57477258 20 + TSS region transcription start site region 145524
Tssr145525 17 57477299 to 57477331 32 + TSS region transcription start site region 145525
Tssr145526 17 57478896 to 57478914 18 + TSS region transcription start site region 145526
Tssr148978 17 57483521 to 57483525 4 - TSS region transcription start site region 148978
Tssr145527 17 57483854 to 57483859 5 + TSS region transcription start site region 145527
Tssr145528 17 57484717 to 57484729 12 + TSS region transcription start site region 145528
Vmn2r120 17 57508783 to 57545314 36531 - protein coding gene vomeronasal 2, receptor 120
Gm49842 17 57557266 to 57557965 699 - pseudogene predicted gene, 49842
Gm21834 17 57741767 to 57742219 452 - protein coding gene predicted gene, 21834
Gm18139 17 57741799 to 57743071 1272 + pseudogene predicted gene, 18139
Gm25102 17 57747565 to 57747676 111 + snRNA gene predicted gene, 25102
Gm17920 17 57756166 to 57757022 856 + pseudogene predicted gene, 17920
Tssr145529 17 57769164 to 57769217 53 + TSS region transcription start site region 145529
Cntnap5c 17 57769570 to 58410355 640785 + protein coding gene contactin associated protein-like 5C
Rpl7a-ps5 17 57838430 to 57839221 791 - pseudogene ribosomal protein L7A, pseudogene 5
Tssr5185 17 57839243 to 57839244 1 - TSS region transcription start site region 5185
D17Mit109 17 58103848 to 58103982 134 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 109
Gm49848 17 58462325 to 58462516 191 + pseudogene predicted gene, 49848
Cpgi9406 17 58567793 to 58568017 224 CpG island CpG island 9406
Gm6149 17 58579030 to 58579967 937 - pseudogene predicted gene 6149
Gm49849 17 58583092 to 58583635 543 + pseudogene predicted gene, 49849
Gm5815 17 58593614 to 58594840 1226 + pseudogene predicted pseudogene 5815
A330072L02Rik 17 58680347 to 58836041 155694 - lincRNA gene RIKEN cDNA A330072L02 gene
Gm9284 17 58803053 to 58803626 573 - pseudogene predicted gene 9284
Pdzph1 17 58878808 to 58991375 112567 - protein coding gene PDZ and pleckstrin homology domains 1
A930025A13Rik 17 58889209 to 58893212 4003 unclassified non-coding RNA gene RIKEN cDNA A930025A13 gene
Tssr148979 17 58908539 to 58908549 10 - TSS region transcription start site region 148979
Tssr148980 17 58932526 to 58932539 13 - TSS region transcription start site region 148980
Tssr148981 17 58934612 to 58934620 8 - TSS region transcription start site region 148981
Gm33751 17 58943933 to 58952582 8649 + lncRNA gene predicted gene, 33751
D17Mit150 17 58953961 to 58954073 112 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 150
Tssr148982 17 58991343 to 58991354 11 - TSS region transcription start site region 148982
Tssr148983 17 58991390 to 58991395 5 - TSS region transcription start site region 148983
Tssr145530 17 58996243 to 58996278 35 + TSS region transcription start site region 145530
Nudt12os 17 58996263 to 59024980 28717 + antisense lncRNA gene nudix (nucleoside diphosphate linked moiety X)-type motif 12, opposite strand
Nudt12 17 59000107 to 59013367 13260 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 12
Cpgi9407 17 59012930 to 59013358 428 CpG island CpG island 9407
Tssr148984 17 59013264 to 59013343 79 - TSS region transcription start site region 148984
Tssr5186 17 59040824 to 59040825 1 - TSS region transcription start site region 5186
n-TVcac3 17 59068708 to 59068780 72 + tRNA gene nuclear encoded tRNA valine 3 (anticodon CAC)
Tssr145531 17 59071376 to 59071378 2 + TSS region transcription start site region 145531
Gm23769 17 59225723 to 59225843 120 - snoRNA gene predicted gene, 23769
Tssr145532 17 59424719 to 59424721 2 + TSS region transcription start site region 145532
D17Mit1004 17 59455153 to 59455256 103 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 1004
Gm23203 17 59569559 to 59569665 106 - snRNA gene predicted gene, 23203
Gm49851 17 59599141 to 59599636 495 + pseudogene predicted gene, 49851
Tssr148985 17 59640773 to 59640775 2 - TSS region transcription start site region 148985
Gm49852 17 59656595 to 59657060 465 + pseudogene predicted gene, 49852
D17Mit203 17 59676854 to 59676974 120 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 203