Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:57085997-57209777

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tubb4a 17 57080066 to 57087782 7716 - protein coding gene tubulin, beta 4A class IVA
Cpgi9394 17 57087153 to 57087787 634 CpG island CpG island 9394
Tssr148897 17 57087557 to 57087612 55 - TSS region transcription start site region 148897
Tssr148898 17 57087614 to 57087636 22 - TSS region transcription start site region 148898
Tssr148899 17 57087637 to 57087657 20 - TSS region transcription start site region 148899
Tssr5183 17 57087659 to 57087669 10 - TSS region transcription start site region 5183
Tssr148900 17 57087729 to 57087734 5 - TSS region transcription start site region 148900
Gm11110 17 57092023 to 57105942 13919 - lincRNA gene predicted gene 11110
Cpgi9395 17 57096587 to 57096766 179 CpG island CpG island 9395
Gm46589 17 57096733 to 57098544 1811 + lncRNA gene predicted gene, 46589
Cpgi9396 17 57105192 to 57106114 922 CpG island CpG island 9396
Tnfsf9 17 57105325 to 57107757 2432 + protein coding gene tumor necrosis factor (ligand) superfamily, member 9
Tssr145375 17 57105401 to 57105421 20 + TSS region transcription start site region 145375
Tssr148901 17 57105916 to 57105948 32 - TSS region transcription start site region 148901
Tssr145376 17 57106632 to 57106643 11 + TSS region transcription start site region 145376
D17Mit252 17 57107800 to 57107924 124 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 252
Gm49892 17 57115118 to 57115447 329 + pseudogene predicted gene, 49892
Cd70 17 57145997 to 57149777 3780 - protein coding gene CD70 antigen
Gm33566 17 57148822 to 57171016 22194 + lncRNA gene predicted gene, 33566
Cpgi9397 17 57149148 to 57149768 620 CpG island CpG island 9397
Tssr148902 17 57149633 to 57149637 4 - TSS region transcription start site region 148902
Tssr148903 17 57172455 to 57172464 9 - TSS region transcription start site region 148903
Tnfsf14 17 57189492 to 57194177 4685 - protein coding gene tumor necrosis factor (ligand) superfamily, member 14
Cpgi9398 17 57190509 to 57190737 228 CpG island CpG island 9398
Tssr148904 17 57194079 to 57194108 29 - TSS region transcription start site region 148904
Tssr148905 17 57194170 to 57194190 20 - TSS region transcription start site region 148905
Tssr148906 17 57198294 to 57198319 25 - TSS region transcription start site region 148906
C3 17 57203970 to 57228136 24166 - protein coding gene complement component 3
Tssr148907 17 57205529 to 57205535 6 - TSS region transcription start site region 148907
Tssr148908 17 57206228 to 57206241 13 - TSS region transcription start site region 148908
Tssr148909 17 57207363 to 57207374 11 - TSS region transcription start site region 148909
Tssr148910 17 57207438 to 57207446 8 - TSS region transcription start site region 148910
Tssr148911 17 57207567 to 57207616 49 - TSS region transcription start site region 148911
Tssr148912 17 57209434 to 57209503 69 - TSS region transcription start site region 148912
Tssr148913 17 57209615 to 57209653 38 - TSS region transcription start site region 148913