Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:56981678-57971708

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382 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lfnq5 17 51431951 to 57227623 5795672 QTL lung function QTL 5
Acer1 17 56953490 to 56982126 28636 - protein coding gene alkaline ceramidase 1
Tssr148846 17 56982104 to 56982118 14 - TSS region transcription start site region 148846
Tssr148847 17 56982120 to 56982161 41 - TSS region transcription start site region 148847
Gm33509 17 56988162 to 56990107 1945 - lncRNA gene predicted gene, 33509
Cpgi9384 17 56989763 to 56990819 1056 CpG island CpG island 9384
Tssr145357 17 56990260 to 56990267 7 + TSS region transcription start site region 145357
Tssr145358 17 56990284 to 56990330 46 + TSS region transcription start site region 145358
Clpp 17 56990305 to 56996188 5883 + protein coding gene caseinolytic mitochondrial matrix peptidase proteolytic subunit
Tssr145359 17 56990331 to 56990350 19 + TSS region transcription start site region 145359
Tssr145360 17 56990398 to 56990410 12 + TSS region transcription start site region 145360
Cpgi9385 17 56997122 to 56997916 794 CpG island CpG island 9385
Tssr145361 17 56997332 to 56997365 33 + TSS region transcription start site region 145361
Alkbh7 17 56997339 to 56999322 1983 + protein coding gene alkB homolog 7
Pspn 17 56999457 to 57000018 561 - protein coding gene persephin
Gtf2f1 17 57003405 to 57011288 7883 - protein coding gene general transcription factor IIF, polypeptide 1
Tssr148848 17 57004418 to 57004433 15 - TSS region transcription start site region 148848
Tssr148849 17 57004690 to 57004713 23 - TSS region transcription start site region 148849
Tssr148850 17 57004810 to 57004828 18 - TSS region transcription start site region 148850
Tssr148851 17 57004864 to 57004892 28 - TSS region transcription start site region 148851
Tssr148852 17 57005449 to 57005469 20 - TSS region transcription start site region 148852
Tssr148853 17 57007063 to 57007090 27 - TSS region transcription start site region 148853
Cpgi9386 17 57010841 to 57011967 1126 CpG island CpG island 9386
Tssr148854 17 57011221 to 57011232 11 - TSS region transcription start site region 148854
Tssr148855 17 57011247 to 57011259 12 - TSS region transcription start site region 148855
Tssr148856 17 57011271 to 57011326 55 - TSS region transcription start site region 148856
Tssr148857 17 57011390 to 57011405 15 - TSS region transcription start site region 148857
Tssr145362 17 57011580 to 57011596 16 + TSS region transcription start site region 145362
Tssr148858 17 57011645 to 57011649 4 - TSS region transcription start site region 148858
Tssr145363 17 57011759 to 57011794 35 + TSS region transcription start site region 145363
Gm17949 17 57012601 to 57019601 7000 + pseudogene predicted gene, 17949
Khsrp 17 57021049 to 57031507 10458 - protein coding gene KH-type splicing regulatory protein
Tssr148859 17 57021309 to 57021327 18 - TSS region transcription start site region 148859
Tssr148860 17 57021450 to 57021475 25 - TSS region transcription start site region 148860
Tssr148861 17 57021687 to 57021700 13 - TSS region transcription start site region 148861
Tssr148862 17 57022024 to 57022049 25 - TSS region transcription start site region 148862
Tssr148863 17 57022088 to 57022150 62 - TSS region transcription start site region 148863
Tssr148864 17 57022421 to 57022436 15 - TSS region transcription start site region 148864
Tssr148865 17 57022461 to 57022509 48 - TSS region transcription start site region 148865
Cpgi9387 17 57022618 to 57022788 170 CpG island CpG island 9387
Tssr148866 17 57023545 to 57023555 10 - TSS region transcription start site region 148866
Tssr148867 17 57024272 to 57024300 28 - TSS region transcription start site region 148867
Tssr5179 17 57024820 to 57024831 11 + TSS region transcription start site region 5179
Cpgi9388 17 57030680 to 57032283 1603 CpG island CpG island 9388
Tssr5180 17 57031438 to 57031443 5 - TSS region transcription start site region 5180
Tssr148868 17 57031468 to 57031538 70 - TSS region transcription start site region 148868
Tssr148869 17 57031540 to 57031551 11 - TSS region transcription start site region 148869
Tssr145364 17 57032213 to 57032235 22 + TSS region transcription start site region 145364
Slc25a41 17 57032773 to 57041654 8881 - protein coding gene solute carrier family 25, member 41
Cpgi9389 17 57038362 to 57038700 338 CpG island CpG island 9389
Tssr148870 17 57041659 to 57041662 3 - TSS region transcription start site region 148870
Gm17168 17 57041775 to 57047143 5368 + antisense lncRNA gene predicted gene 17168
Slc25a23 17 57043711 to 57059863 16152 - protein coding gene solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
Tssr148871 17 57044090 to 57044110 20 - TSS region transcription start site region 148871
Tssr148872 17 57044501 to 57044521 20 - TSS region transcription start site region 148872
Tssr148873 17 57044536 to 57044551 15 - TSS region transcription start site region 148873
Tssr148874 17 57045319 to 57045361 42 - TSS region transcription start site region 148874
Tssr5181 17 57045569 to 57045602 33 - TSS region transcription start site region 5181
Cpgi9390 17 57059174 to 57059958 784 CpG island CpG island 9390
Tssr148875 17 57059795 to 57059857 62 - TSS region transcription start site region 148875
Cpgi9391 17 57060208 to 57060823 615 CpG island CpG island 9391
Tssr145365 17 57060735 to 57060757 22 + TSS region transcription start site region 145365
Crb3 17 57061627 to 57068117 6490 + protein coding gene crumbs family member 3
Cpgi9392 17 57061964 to 57062893 929 CpG island CpG island 9392
Tssr148876 17 57061989 to 57061995 6 - TSS region transcription start site region 148876
Tssr145366 17 57062260 to 57062315 55 + TSS region transcription start site region 145366
Tssr145367 17 57062317 to 57062337 20 + TSS region transcription start site region 145367
Tssr145368 17 57062353 to 57062360 7 + TSS region transcription start site region 145368
Tssr145369 17 57062486 to 57062523 37 + TSS region transcription start site region 145369
Tssr145370 17 57062525 to 57062542 17 + TSS region transcription start site region 145370
Dennd1c 17 57066051 to 57078510 12459 - protein coding gene DENN/MADD domain containing 1C
Gm49888 17 57068260 to 57069360 1100 - sense intronic lncRNA gene predicted gene, 49888
Tssr148877 17 57077042 to 57077067 25 - TSS region transcription start site region 148877
Tssr148878 17 57078410 to 57078417 7 - TSS region transcription start site region 148878
Tssr148879 17 57078447 to 57078458 11 - TSS region transcription start site region 148879
Tssr148880 17 57078459 to 57078484 25 - TSS region transcription start site region 148880
Tssr148881 17 57078490 to 57078519 29 - TSS region transcription start site region 148881
Tssr145371 17 57078566 to 57078609 43 + TSS region transcription start site region 145371
Tubb4a 17 57080066 to 57087782 7716 - protein coding gene tubulin, beta 4A class IVA
Tssr5182 17 57080219 to 57080244 25 + TSS region transcription start site region 5182
Tssr145372 17 57080247 to 57080285 38 + TSS region transcription start site region 145372
Tssr148882 17 57080362 to 57080415 53 - TSS region transcription start site region 148882
Tssr148883 17 57080457 to 57080508 51 - TSS region transcription start site region 148883
Tssr148884 17 57080530 to 57080577 47 - TSS region transcription start site region 148884
Tssr145373 17 57080594 to 57080605 11 + TSS region transcription start site region 145373
Tssr148885 17 57080607 to 57080625 18 - TSS region transcription start site region 148885
Tssr148886 17 57080634 to 57080646 12 - TSS region transcription start site region 148886
Tssr148887 17 57080658 to 57080662 4 - TSS region transcription start site region 148887
Tssr148888 17 57080685 to 57080705 20 - TSS region transcription start site region 148888
Tssr145374 17 57080688 to 57080721 33 + TSS region transcription start site region 145374
Tssr148889 17 57080722 to 57080729 7 - TSS region transcription start site region 148889
Tssr148890 17 57080818 to 57080830 12 - TSS region transcription start site region 148890
Tssr148891 17 57080936 to 57080950 14 - TSS region transcription start site region 148891
Tssr148892 17 57080956 to 57080969 13 - TSS region transcription start site region 148892
Cpgi9393 17 57081089 to 57081840 751 CpG island CpG island 9393
Tssr148893 17 57081170 to 57081182 12 - TSS region transcription start site region 148893
Tssr148894 17 57081242 to 57081254 12 - TSS region transcription start site region 148894
Tssr148895 17 57081646 to 57081658 12 - TSS region transcription start site region 148895
Tssr148896 17 57081708 to 57081725 17 - TSS region transcription start site region 148896
Cpgi9394 17 57087153 to 57087787 634 CpG island CpG island 9394
Tssr148897 17 57087557 to 57087612 55 - TSS region transcription start site region 148897
Tssr148898 17 57087614 to 57087636 22 - TSS region transcription start site region 148898
Tssr148899 17 57087637 to 57087657 20 - TSS region transcription start site region 148899
Tssr5183 17 57087659 to 57087669 10 - TSS region transcription start site region 5183
Tssr148900 17 57087729 to 57087734 5 - TSS region transcription start site region 148900
Gm11110 17 57092023 to 57105942 13919 - lincRNA gene predicted gene 11110
Cpgi9395 17 57096587 to 57096766 179 CpG island CpG island 9395
Gm46589 17 57096733 to 57098544 1811 + lncRNA gene predicted gene, 46589
Cpgi9396 17 57105192 to 57106114 922 CpG island CpG island 9396
Tnfsf9 17 57105325 to 57107757 2432 + protein coding gene tumor necrosis factor (ligand) superfamily, member 9
Tssr145375 17 57105401 to 57105421 20 + TSS region transcription start site region 145375
Tssr148901 17 57105916 to 57105948 32 - TSS region transcription start site region 148901
Tssr145376 17 57106632 to 57106643 11 + TSS region transcription start site region 145376
D17Mit252 17 57107800 to 57107924 124 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 252
Gm49892 17 57115118 to 57115447 329 + pseudogene predicted gene, 49892
Cd70 17 57145997 to 57149777 3780 - protein coding gene CD70 antigen
Gm33566 17 57148822 to 57171016 22194 + lncRNA gene predicted gene, 33566
Cpgi9397 17 57149148 to 57149768 620 CpG island CpG island 9397
Tssr148902 17 57149633 to 57149637 4 - TSS region transcription start site region 148902
Tssr148903 17 57172455 to 57172464 9 - TSS region transcription start site region 148903
Tnfsf14 17 57189492 to 57194177 4685 - protein coding gene tumor necrosis factor (ligand) superfamily, member 14
Cpgi9398 17 57190509 to 57190737 228 CpG island CpG island 9398
Tssr148904 17 57194079 to 57194108 29 - TSS region transcription start site region 148904
Tssr148905 17 57194170 to 57194190 20 - TSS region transcription start site region 148905
Tssr148906 17 57198294 to 57198319 25 - TSS region transcription start site region 148906
C3 17 57203970 to 57228136 24166 - protein coding gene complement component 3
Tssr148907 17 57205529 to 57205535 6 - TSS region transcription start site region 148907
Tssr148908 17 57206228 to 57206241 13 - TSS region transcription start site region 148908
Tssr148909 17 57207363 to 57207374 11 - TSS region transcription start site region 148909
Tssr148910 17 57207438 to 57207446 8 - TSS region transcription start site region 148910
Tssr148911 17 57207567 to 57207616 49 - TSS region transcription start site region 148911
Tssr148912 17 57209434 to 57209503 69 - TSS region transcription start site region 148912
Tssr148913 17 57209615 to 57209653 38 - TSS region transcription start site region 148913
Tssr148914 17 57210191 to 57210197 6 - TSS region transcription start site region 148914
Tssr148915 17 57210218 to 57210253 35 - TSS region transcription start site region 148915
Tssr148916 17 57210276 to 57210299 23 - TSS region transcription start site region 148916
Tssr148917 17 57211637 to 57211656 19 - TSS region transcription start site region 148917
Tssr148918 17 57211667 to 57211703 36 - TSS region transcription start site region 148918
Tssr148919 17 57211712 to 57211725 13 - TSS region transcription start site region 148919
Tssr148920 17 57212669 to 57212691 22 - TSS region transcription start site region 148920
Tssr148921 17 57212716 to 57212735 19 - TSS region transcription start site region 148921
Tssr148922 17 57213816 to 57213843 27 - TSS region transcription start site region 148922
Tssr148923 17 57214785 to 57214830 45 - TSS region transcription start site region 148923
Tssr148924 17 57214840 to 57214850 10 - TSS region transcription start site region 148924
Tssr148925 17 57215147 to 57215178 31 - TSS region transcription start site region 148925
Tssr148926 17 57215878 to 57215896 18 - TSS region transcription start site region 148926
Tssr148927 17 57217147 to 57217170 23 - TSS region transcription start site region 148927
Mir6978 17 57217172 to 57217228 56 - miRNA gene microRNA 6978
Tssr148928 17 57217888 to 57217899 11 - TSS region transcription start site region 148928
Tssr148929 17 57218132 to 57218144 12 - TSS region transcription start site region 148929
Tssr148930 17 57218192 to 57218197 5 - TSS region transcription start site region 148930
Tssr148931 17 57218506 to 57218525 19 - TSS region transcription start site region 148931
Tssr148932 17 57218656 to 57218668 12 - TSS region transcription start site region 148932
Tssr148933 17 57218872 to 57218892 20 - TSS region transcription start site region 148933
Tssr148934 17 57220180 to 57220196 16 - TSS region transcription start site region 148934
Tssr148935 17 57221041 to 57221052 11 - TSS region transcription start site region 148935
Tssr148936 17 57221058 to 57221073 15 - TSS region transcription start site region 148936
Tssr148937 17 57221081 to 57221094 13 - TSS region transcription start site region 148937
Tssr148938 17 57221352 to 57221400 48 - TSS region transcription start site region 148938
Tssr148939 17 57221915 to 57221929 14 - TSS region transcription start site region 148939
Tssr145377 17 57222190 to 57222231 41 + TSS region transcription start site region 145377
Tssr148940 17 57222250 to 57222273 23 - TSS region transcription start site region 148940
Tssr148941 17 57222330 to 57222346 16 - TSS region transcription start site region 148941
Tssr148942 17 57222831 to 57222846 15 - TSS region transcription start site region 148942
Tssr148943 17 57222871 to 57222886 15 - TSS region transcription start site region 148943
Tssr148944 17 57222891 to 57222900 9 - TSS region transcription start site region 148944
Tssr148945 17 57222919 to 57222937 18 - TSS region transcription start site region 148945
Tssr148946 17 57222944 to 57222949 5 - TSS region transcription start site region 148946
Tssr145378 17 57223112 to 57223135 23 + TSS region transcription start site region 145378
Tssr148947 17 57223183 to 57223199 16 - TSS region transcription start site region 148947
Tssr145379 17 57223193 to 57223210 17 + TSS region transcription start site region 145379
Tssr145380 17 57223222 to 57223255 33 + TSS region transcription start site region 145380
Tssr148948 17 57223235 to 57223283 48 - TSS region transcription start site region 148948
Tssr145381 17 57223288 to 57223309 21 + TSS region transcription start site region 145381
Tssr148949 17 57223290 to 57223339 49 - TSS region transcription start site region 148949
Tssr145382 17 57223818 to 57223863 45 + TSS region transcription start site region 145382
Tssr148950 17 57223855 to 57223893 38 - TSS region transcription start site region 148950
Tssr148951 17 57223896 to 57223922 26 - TSS region transcription start site region 148951
Tssr145383 17 57223934 to 57223940 6 + TSS region transcription start site region 145383
Tssr148952 17 57223937 to 57223982 45 - TSS region transcription start site region 148952
Tssr145384 17 57224067 to 57224110 43 + TSS region transcription start site region 145384
Tssr148953 17 57224121 to 57224163 42 - TSS region transcription start site region 148953
Tssr148954 17 57224172 to 57224188 16 - TSS region transcription start site region 148954
Tssr148955 17 57224319 to 57224333 14 - TSS region transcription start site region 148955
Cpgi9399 17 57224322 to 57224815 493 CpG island CpG island 9399
Tssr148956 17 57224352 to 57224366 14 - TSS region transcription start site region 148956
Tssr148957 17 57224880 to 57224952 72 - TSS region transcription start site region 148957
Tssr148958 17 57225103 to 57225115 12 - TSS region transcription start site region 148958
Tssr145385 17 57225249 to 57225282 33 + TSS region transcription start site region 145385
Tssr148959 17 57225263 to 57225321 58 - TSS region transcription start site region 148959
Tssr148960 17 57226017 to 57226034 17 - TSS region transcription start site region 148960
Tssr145386 17 57226025 to 57226044 19 + TSS region transcription start site region 145386
Tssr148961 17 57226054 to 57226076 22 - TSS region transcription start site region 148961
Tssr148962 17 57226200 to 57226225 25 - TSS region transcription start site region 148962
Tssr148963 17 57226252 to 57226263 11 - TSS region transcription start site region 148963
Tssr145387 17 57226256 to 57226294 38 + TSS region transcription start site region 145387
Tssr148964 17 57226285 to 57226298 13 - TSS region transcription start site region 148964
Tssr148965 17 57226796 to 57226812 16 - TSS region transcription start site region 148965
Tssr148966 17 57226813 to 57226853 40 - TSS region transcription start site region 148966
Tssr145388 17 57226838 to 57226843 5 + TSS region transcription start site region 145388