Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:56799418-57209433

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165 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rfx2 17 56775897 to 56831008 55111 - protein coding gene regulatory factor X, 2 (influences HLA class II expression)
Cpgi9380 17 56829792 to 56830236 444 CpG island CpG island 9380
Cpgi9381 17 56830456 to 56831739 1283 CpG island CpG island 9381
Tssr148837 17 56830916 to 56831005 89 - TSS region transcription start site region 148837
Tssr148838 17 56831058 to 56831128 70 - TSS region transcription start site region 148838
Tssr145344 17 56831353 to 56831367 14 + TSS region transcription start site region 145344
Tssr145345 17 56831676 to 56831680 4 + TSS region transcription start site region 145345
Acsbg2 17 56843103 to 56874447 31344 - protein coding gene acyl-CoA synthetase bubblegum family member 2
Tssr145346 17 56861532 to 56861542 10 + TSS region transcription start site region 145346
Tssr145347 17 56861549 to 56861561 12 + TSS region transcription start site region 145347
Tssr5178 17 56866330 to 56866344 14 + TSS region transcription start site region 5178
Tssr148839 17 56874395 to 56874398 3 - TSS region transcription start site region 148839
Tssr148840 17 56874400 to 56874414 14 - TSS region transcription start site region 148840
Tssr148841 17 56874421 to 56874460 39 - TSS region transcription start site region 148841
Tssr145348 17 56875471 to 56875489 18 + TSS region transcription start site region 145348
1700061G19Rik 17 56875477 to 56888904 13427 + protein coding gene RIKEN cDNA 1700061G19 gene
Tssr145349 17 56875498 to 56875507 9 + TSS region transcription start site region 145349
Tssr145350 17 56875509 to 56875518 9 + TSS region transcription start site region 145350
Tssr145351 17 56875523 to 56875535 12 + TSS region transcription start site region 145351
Tssr145352 17 56877127 to 56877140 13 + TSS region transcription start site region 145352
Tssr145353 17 56878637 to 56878640 3 + TSS region transcription start site region 145353
Cpgi9382 17 56883216 to 56883962 746 CpG island CpG island 9382
Tssr148842 17 56883851 to 56883862 11 - TSS region transcription start site region 148842
Tssr145354 17 56883973 to 56884019 46 + TSS region transcription start site region 145354
Mllt1 17 56892611 to 56935415 42804 - protein coding gene myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1
Tssr148843 17 56905799 to 56905805 6 - TSS region transcription start site region 148843
Tssr148844 17 56906218 to 56906234 16 - TSS region transcription start site region 148844
Tssr145355 17 56931699 to 56931708 9 + TSS region transcription start site region 145355
Cpgi9383 17 56934785 to 56936014 1229 CpG island CpG island 9383
Tssr148845 17 56935413 to 56935504 91 - TSS region transcription start site region 148845
Acer1 17 56953490 to 56982126 28636 - protein coding gene alkaline ceramidase 1
Gm49887 17 56958320 to 56959424 1104 + lincRNA gene predicted gene, 49887
D17Mit158.1 17 56976288 to 56976399 111 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 158.1
D17Mit158 17 56976380 to 56976491 111 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 158
D17Mit158.3 17 56976472 to 56976631 159 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 158.3
Tssr145356 17 56981320 to 56981329 9 + TSS region transcription start site region 145356
Tssr148846 17 56982104 to 56982118 14 - TSS region transcription start site region 148846
Tssr148847 17 56982120 to 56982161 41 - TSS region transcription start site region 148847
Gm33509 17 56988162 to 56990107 1945 - lncRNA gene predicted gene, 33509
Cpgi9384 17 56989763 to 56990819 1056 CpG island CpG island 9384
Tssr145357 17 56990260 to 56990267 7 + TSS region transcription start site region 145357
Tssr145358 17 56990284 to 56990330 46 + TSS region transcription start site region 145358
Clpp 17 56990305 to 56996188 5883 + protein coding gene caseinolytic mitochondrial matrix peptidase proteolytic subunit
Tssr145359 17 56990331 to 56990350 19 + TSS region transcription start site region 145359
Tssr145360 17 56990398 to 56990410 12 + TSS region transcription start site region 145360
Cpgi9385 17 56997122 to 56997916 794 CpG island CpG island 9385
Tssr145361 17 56997332 to 56997365 33 + TSS region transcription start site region 145361
Alkbh7 17 56997339 to 56999322 1983 + protein coding gene alkB homolog 7
Pspn 17 56999457 to 57000018 561 - protein coding gene persephin
Gtf2f1 17 57003405 to 57011288 7883 - protein coding gene general transcription factor IIF, polypeptide 1
Tssr148848 17 57004418 to 57004433 15 - TSS region transcription start site region 148848
Tssr148849 17 57004690 to 57004713 23 - TSS region transcription start site region 148849
Tssr148850 17 57004810 to 57004828 18 - TSS region transcription start site region 148850
Tssr148851 17 57004864 to 57004892 28 - TSS region transcription start site region 148851
Tssr148852 17 57005449 to 57005469 20 - TSS region transcription start site region 148852
Tssr148853 17 57007063 to 57007090 27 - TSS region transcription start site region 148853
Cpgi9386 17 57010841 to 57011967 1126 CpG island CpG island 9386
Tssr148854 17 57011221 to 57011232 11 - TSS region transcription start site region 148854
Tssr148855 17 57011247 to 57011259 12 - TSS region transcription start site region 148855
Tssr148856 17 57011271 to 57011326 55 - TSS region transcription start site region 148856
Tssr148857 17 57011390 to 57011405 15 - TSS region transcription start site region 148857
Tssr145362 17 57011580 to 57011596 16 + TSS region transcription start site region 145362
Tssr148858 17 57011645 to 57011649 4 - TSS region transcription start site region 148858
Tssr145363 17 57011759 to 57011794 35 + TSS region transcription start site region 145363
Gm17949 17 57012601 to 57019601 7000 + pseudogene predicted gene, 17949
Khsrp 17 57021049 to 57031507 10458 - protein coding gene KH-type splicing regulatory protein
Tssr148859 17 57021309 to 57021327 18 - TSS region transcription start site region 148859
Tssr148860 17 57021450 to 57021475 25 - TSS region transcription start site region 148860
Tssr148861 17 57021687 to 57021700 13 - TSS region transcription start site region 148861
Tssr148862 17 57022024 to 57022049 25 - TSS region transcription start site region 148862
Tssr148863 17 57022088 to 57022150 62 - TSS region transcription start site region 148863
Tssr148864 17 57022421 to 57022436 15 - TSS region transcription start site region 148864
Tssr148865 17 57022461 to 57022509 48 - TSS region transcription start site region 148865
Cpgi9387 17 57022618 to 57022788 170 CpG island CpG island 9387
Tssr148866 17 57023545 to 57023555 10 - TSS region transcription start site region 148866
Tssr148867 17 57024272 to 57024300 28 - TSS region transcription start site region 148867
Tssr5179 17 57024820 to 57024831 11 + TSS region transcription start site region 5179
Cpgi9388 17 57030680 to 57032283 1603 CpG island CpG island 9388
Tssr5180 17 57031438 to 57031443 5 - TSS region transcription start site region 5180
Tssr148868 17 57031468 to 57031538 70 - TSS region transcription start site region 148868
Tssr148869 17 57031540 to 57031551 11 - TSS region transcription start site region 148869
Tssr145364 17 57032213 to 57032235 22 + TSS region transcription start site region 145364
Slc25a41 17 57032773 to 57041654 8881 - protein coding gene solute carrier family 25, member 41
Cpgi9389 17 57038362 to 57038700 338 CpG island CpG island 9389
Tssr148870 17 57041659 to 57041662 3 - TSS region transcription start site region 148870
Gm17168 17 57041775 to 57047143 5368 + antisense lncRNA gene predicted gene 17168
Slc25a23 17 57043711 to 57059863 16152 - protein coding gene solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
Tssr148871 17 57044090 to 57044110 20 - TSS region transcription start site region 148871
Tssr148872 17 57044501 to 57044521 20 - TSS region transcription start site region 148872
Tssr148873 17 57044536 to 57044551 15 - TSS region transcription start site region 148873
Tssr148874 17 57045319 to 57045361 42 - TSS region transcription start site region 148874
Tssr5181 17 57045569 to 57045602 33 - TSS region transcription start site region 5181
Cpgi9390 17 57059174 to 57059958 784 CpG island CpG island 9390
Tssr148875 17 57059795 to 57059857 62 - TSS region transcription start site region 148875
Cpgi9391 17 57060208 to 57060823 615 CpG island CpG island 9391
Tssr145365 17 57060735 to 57060757 22 + TSS region transcription start site region 145365
Crb3 17 57061627 to 57068117 6490 + protein coding gene crumbs family member 3
Cpgi9392 17 57061964 to 57062893 929 CpG island CpG island 9392
Tssr148876 17 57061989 to 57061995 6 - TSS region transcription start site region 148876
Tssr145366 17 57062260 to 57062315 55 + TSS region transcription start site region 145366
Tssr145367 17 57062317 to 57062337 20 + TSS region transcription start site region 145367
Tssr145368 17 57062353 to 57062360 7 + TSS region transcription start site region 145368
Tssr145369 17 57062486 to 57062523 37 + TSS region transcription start site region 145369
Tssr145370 17 57062525 to 57062542 17 + TSS region transcription start site region 145370
Dennd1c 17 57066051 to 57078510 12459 - protein coding gene DENN/MADD domain containing 1C
Gm49888 17 57068260 to 57069360 1100 - sense intronic lncRNA gene predicted gene, 49888
Tssr148877 17 57077042 to 57077067 25 - TSS region transcription start site region 148877
Tssr148878 17 57078410 to 57078417 7 - TSS region transcription start site region 148878
Tssr148879 17 57078447 to 57078458 11 - TSS region transcription start site region 148879
Tssr148880 17 57078459 to 57078484 25 - TSS region transcription start site region 148880
Tssr148881 17 57078490 to 57078519 29 - TSS region transcription start site region 148881
Tssr145371 17 57078566 to 57078609 43 + TSS region transcription start site region 145371
Tubb4a 17 57080066 to 57087782 7716 - protein coding gene tubulin, beta 4A class IVA
Tssr5182 17 57080219 to 57080244 25 + TSS region transcription start site region 5182
Tssr145372 17 57080247 to 57080285 38 + TSS region transcription start site region 145372
Tssr148882 17 57080362 to 57080415 53 - TSS region transcription start site region 148882
Tssr148883 17 57080457 to 57080508 51 - TSS region transcription start site region 148883
Tssr148884 17 57080530 to 57080577 47 - TSS region transcription start site region 148884
Tssr145373 17 57080594 to 57080605 11 + TSS region transcription start site region 145373
Tssr148885 17 57080607 to 57080625 18 - TSS region transcription start site region 148885
Tssr148886 17 57080634 to 57080646 12 - TSS region transcription start site region 148886
Tssr148887 17 57080658 to 57080662 4 - TSS region transcription start site region 148887
Tssr148888 17 57080685 to 57080705 20 - TSS region transcription start site region 148888
Tssr145374 17 57080688 to 57080721 33 + TSS region transcription start site region 145374
Tssr148889 17 57080722 to 57080729 7 - TSS region transcription start site region 148889
Tssr148890 17 57080818 to 57080830 12 - TSS region transcription start site region 148890
Tssr148891 17 57080936 to 57080950 14 - TSS region transcription start site region 148891
Tssr148892 17 57080956 to 57080969 13 - TSS region transcription start site region 148892
Cpgi9393 17 57081089 to 57081840 751 CpG island CpG island 9393
Tssr148893 17 57081170 to 57081182 12 - TSS region transcription start site region 148893
Tssr148894 17 57081242 to 57081254 12 - TSS region transcription start site region 148894
Tssr148895 17 57081646 to 57081658 12 - TSS region transcription start site region 148895
Tssr148896 17 57081708 to 57081725 17 - TSS region transcription start site region 148896
Cpgi9394 17 57087153 to 57087787 634 CpG island CpG island 9394
Tssr148897 17 57087557 to 57087612 55 - TSS region transcription start site region 148897
Tssr148898 17 57087614 to 57087636 22 - TSS region transcription start site region 148898
Tssr148899 17 57087637 to 57087657 20 - TSS region transcription start site region 148899
Tssr5183 17 57087659 to 57087669 10 - TSS region transcription start site region 5183
Tssr148900 17 57087729 to 57087734 5 - TSS region transcription start site region 148900
Gm11110 17 57092023 to 57105942 13919 - lincRNA gene predicted gene 11110
Cpgi9395 17 57096587 to 57096766 179 CpG island CpG island 9395
Gm46589 17 57096733 to 57098544 1811 + lncRNA gene predicted gene, 46589
Cpgi9396 17 57105192 to 57106114 922 CpG island CpG island 9396
Tnfsf9 17 57105325 to 57107757 2432 + protein coding gene tumor necrosis factor (ligand) superfamily, member 9
Tssr145375 17 57105401 to 57105421 20 + TSS region transcription start site region 145375
Tssr148901 17 57105916 to 57105948 32 - TSS region transcription start site region 148901
Tssr145376 17 57106632 to 57106643 11 + TSS region transcription start site region 145376
D17Mit252 17 57107800 to 57107924 124 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 252
Gm49892 17 57115118 to 57115447 329 + pseudogene predicted gene, 49892
Cd70 17 57145997 to 57149777 3780 - protein coding gene CD70 antigen
Gm33566 17 57148822 to 57171016 22194 + lncRNA gene predicted gene, 33566
Cpgi9397 17 57149148 to 57149768 620 CpG island CpG island 9397
Tssr148902 17 57149633 to 57149637 4 - TSS region transcription start site region 148902
Tssr148903 17 57172455 to 57172464 9 - TSS region transcription start site region 148903
Tnfsf14 17 57189492 to 57194177 4685 - protein coding gene tumor necrosis factor (ligand) superfamily, member 14
Cpgi9398 17 57190509 to 57190737 228 CpG island CpG island 9398
Tssr148904 17 57194079 to 57194108 29 - TSS region transcription start site region 148904
Tssr148905 17 57194170 to 57194190 20 - TSS region transcription start site region 148905
Tssr148906 17 57198294 to 57198319 25 - TSS region transcription start site region 148906
C3 17 57203970 to 57228136 24166 - protein coding gene complement component 3
Tssr148907 17 57205529 to 57205535 6 - TSS region transcription start site region 148907
Tssr148908 17 57206228 to 57206241 13 - TSS region transcription start site region 148908
Tssr148909 17 57207363 to 57207374 11 - TSS region transcription start site region 148909
Tssr148910 17 57207438 to 57207446 8 - TSS region transcription start site region 148910
Tssr148911 17 57207567 to 57207616 49 - TSS region transcription start site region 148911