Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:56634228-56839292

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Catsperd 17 56628143 to 56664456 36313 + protein coding gene cation channel sperm associated auxiliary subunit delta
Tssr145319 17 56638263 to 56638267 4 + TSS region transcription start site region 145319
D17Mit239 17 56644471 to 56644576 105 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 239
Tssr145320 17 56647735 to 56647766 31 + TSS region transcription start site region 145320
Gm33461 17 56659459 to 56664026 4567 - lncRNA gene predicted gene, 33461
Tssr145321 17 56659693 to 56659698 5 + TSS region transcription start site region 145321
Cpgi9370 17 56668551 to 56669076 525 CpG island CpG island 9370
Cpgi9371 17 56672849 to 56674139 1290 CpG island CpG island 9371
Tssr145322 17 56673223 to 56673232 9 + TSS region transcription start site region 145322
Tssr145323 17 56673273 to 56673287 14 + TSS region transcription start site region 145323
Ranbp3 17 56673294 to 56711764 38470 + protein coding gene RAN binding protein 3
Tssr145324 17 56673321 to 56673328 7 + TSS region transcription start site region 145324
Tssr145325 17 56673356 to 56673392 36 + TSS region transcription start site region 145325
Tssr145326 17 56680545 to 56680552 7 + TSS region transcription start site region 145326
Tssr145327 17 56696727 to 56696749 22 + TSS region transcription start site region 145327
Tssr145328 17 56708858 to 56708868 10 + TSS region transcription start site region 145328
Tssr148830 17 56709840 to 56709889 49 - TSS region transcription start site region 148830
Tssr145329 17 56709906 to 56709934 28 + TSS region transcription start site region 145329
Tssr145330 17 56709936 to 56709975 39 + TSS region transcription start site region 145330
Tssr145331 17 56709981 to 56709992 11 + TSS region transcription start site region 145331
Tssr145332 17 56710004 to 56710017 13 + TSS region transcription start site region 145332
Tssr145333 17 56710028 to 56710039 11 + TSS region transcription start site region 145333
Tssr145334 17 56710064 to 56710071 7 + TSS region transcription start site region 145334
Tssr145335 17 56710942 to 56710954 12 + TSS region transcription start site region 145335
Ccpn-ps 17 56711695 to 56712652 957 - pseudogene calcyphosine, pseudogene
Vmac 17 56713932 to 56717699 3767 - protein coding gene vimentin-type intermediate filament associated coiled-coil protein
Cpgi9372 17 56716470 to 56718363 1893 CpG island CpG island 9372
Tssr148831 17 56716788 to 56716858 70 - TSS region transcription start site region 148831
Tssr148832 17 56717681 to 56717709 28 - TSS region transcription start site region 148832
Tssr145336 17 56717759 to 56717819 60 + TSS region transcription start site region 145336
Ndufa11 17 56717767 to 56722141 4374 + protein coding gene NADH:ubiquinone oxidoreductase subunit A11
Tssr148833 17 56718030 to 56718042 12 - TSS region transcription start site region 148833
Fut4-ps1 17 56734228 to 56739292 5064 + pseudogene fucosyltransferase 4, pseudogene 1
Tssr145337 17 56734826 to 56734841 15 + TSS region transcription start site region 145337
Cpgi9373 17 56740868 to 56741067 199 CpG island CpG island 9373
Cpgi9374 17 56751179 to 56752548 1369 CpG island CpG island 9374
Nrtn 17 56751325 to 56757530 6205 - protein coding gene neurturin
Cpgi9375 17 56753255 to 56753842 587 CpG island CpG island 9375
Cpgi9376 17 56754678 to 56755072 394 CpG island CpG island 9376
Cpgi9377 17 56756637 to 56758012 1375 CpG island CpG island 9377
Tssr148834 17 56757516 to 56757532 16 - TSS region transcription start site region 148834
Tssr148835 17 56757543 to 56757569 26 - TSS region transcription start site region 148835
Cpgi9378 17 56761902 to 56762359 457 CpG island CpG island 9378
Cpgi9379 17 56764491 to 56765271 780 CpG island CpG island 9379
Tssr145338 17 56764722 to 56764733 11 + TSS region transcription start site region 145338
Tssr145339 17 56764738 to 56764763 25 + TSS region transcription start site region 145339
Dus3l 17 56764757 to 56770093 5336 + protein coding gene dihydrouridine synthase 3-like (S. cerevisiae)
Tssr145340 17 56764767 to 56764798 31 + TSS region transcription start site region 145340
Tssr145341 17 56764805 to 56764845 40 + TSS region transcription start site region 145341
Tssr145342 17 56770258 to 56770305 47 + TSS region transcription start site region 145342
Prr22 17 56770276 to 56772134 1858 + protein coding gene proline rich 22
Rfx2 17 56775897 to 56831008 55111 - protein coding gene regulatory factor X, 2 (influences HLA class II expression)
Gm41604 17 56791989 to 56796267 4278 + lncRNA gene predicted gene, 41604
Tssr145343 17 56793904 to 56793917 13 + TSS region transcription start site region 145343
Tssr148836 17 56794712 to 56794717 5 - TSS region transcription start site region 148836
Cpgi9380 17 56829792 to 56830236 444 CpG island CpG island 9380
Cpgi9381 17 56830456 to 56831739 1283 CpG island CpG island 9381
Tssr148837 17 56830916 to 56831005 89 - TSS region transcription start site region 148837
Tssr148838 17 56831058 to 56831128 70 - TSS region transcription start site region 148838
Tssr145344 17 56831353 to 56831367 14 + TSS region transcription start site region 145344
Tssr145345 17 56831676 to 56831680 4 + TSS region transcription start site region 145345