Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:56544757-56990093

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm20219 17 56551414 to 56554387 2973 - lncRNA gene predicted gene, 20219
Tssr148816 17 56554382 to 56554426 44 - TSS region transcription start site region 148816
Safb2 17 56560965 to 56584585 23620 - protein coding gene scaffold attachment factor B2
Tssr148817 17 56571234 to 56571264 30 - TSS region transcription start site region 148817
Tssr148818 17 56571500 to 56571513 13 - TSS region transcription start site region 148818
Cpgi9365 17 56583696 to 56585776 2080 CpG island CpG island 9365
Tssr148819 17 56584309 to 56584323 14 - TSS region transcription start site region 148819
Tssr148820 17 56584507 to 56584568 61 - TSS region transcription start site region 148820
Tssr148821 17 56584594 to 56584605 11 - TSS region transcription start site region 148821
Tssr145307 17 56584822 to 56584827 5 + TSS region transcription start site region 145307
Safb 17 56584830 to 56606294 21464 + protein coding gene scaffold attachment factor B
Tssr145308 17 56584923 to 56584932 9 + TSS region transcription start site region 145308
Tssr145309 17 56584948 to 56584959 11 + TSS region transcription start site region 145309
Tssr145310 17 56584961 to 56584968 7 + TSS region transcription start site region 145310
Tssr145311 17 56584973 to 56585031 58 + TSS region transcription start site region 145311
Tssr145312 17 56593947 to 56593961 14 + TSS region transcription start site region 145312
Cpgi9366 17 56603531 to 56603829 298 CpG island CpG island 9366
Micos13 17 56607452 to 56609771 2319 - protein coding gene mitochondrial contact site and cristae organizing system subunit 13
Cpgi9367 17 56609322 to 56610299 977 CpG island CpG island 9367
Tssr148822 17 56609675 to 56609686 11 - TSS region transcription start site region 148822
Tssr148823 17 56609689 to 56609715 26 - TSS region transcription start site region 148823
Tssr148824 17 56609804 to 56609819 15 - TSS region transcription start site region 148824
Tssr148825 17 56609823 to 56609834 11 - TSS region transcription start site region 148825
Tssr145313 17 56609885 to 56609916 31 + TSS region transcription start site region 145313
Tssr148826 17 56609928 to 56609939 11 - TSS region transcription start site region 148826
Tssr148827 17 56609958 to 56609971 13 - TSS region transcription start site region 148827
Tssr148828 17 56609988 to 56610005 17 - TSS region transcription start site region 148828
Gm46588 17 56610006 to 56610751 745 + lncRNA gene predicted gene, 46588
Cpgi9368 17 56613235 to 56614360 1125 CpG island CpG island 9368
Tssr145314 17 56613355 to 56613358 3 + TSS region transcription start site region 145314
Tssr145315 17 56613392 to 56613425 33 + TSS region transcription start site region 145315
Rpl36 17 56613416 to 56614243 827 + protein coding gene ribosomal protein L36
Tssr145316 17 56613436 to 56613477 41 + TSS region transcription start site region 145316
Tssr5177 17 56613498 to 56613501 3 + TSS region transcription start site region 5177
Lonp1 17 56614297 to 56626887 12590 - protein coding gene lon peptidase 1, mitochondrial
Cpgi9369 17 56626282 to 56627793 1511 CpG island CpG island 9369
Tssr148829 17 56626872 to 56626893 21 - TSS region transcription start site region 148829
Tssr145317 17 56628118 to 56628148 30 + TSS region transcription start site region 145317
Catsperd 17 56628143 to 56664456 36313 + protein coding gene cation channel sperm associated auxiliary subunit delta
Tssr145318 17 56628157 to 56628171 14 + TSS region transcription start site region 145318
Tssr145319 17 56638263 to 56638267 4 + TSS region transcription start site region 145319
D17Mit239 17 56644471 to 56644576 105 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 239
Tssr145320 17 56647735 to 56647766 31 + TSS region transcription start site region 145320
Gm33461 17 56659459 to 56664026 4567 - lncRNA gene predicted gene, 33461
Tssr145321 17 56659693 to 56659698 5 + TSS region transcription start site region 145321
Cpgi9370 17 56668551 to 56669076 525 CpG island CpG island 9370
Cpgi9371 17 56672849 to 56674139 1290 CpG island CpG island 9371
Tssr145322 17 56673223 to 56673232 9 + TSS region transcription start site region 145322
Tssr145323 17 56673273 to 56673287 14 + TSS region transcription start site region 145323
Ranbp3 17 56673294 to 56711764 38470 + protein coding gene RAN binding protein 3
Tssr145324 17 56673321 to 56673328 7 + TSS region transcription start site region 145324
Tssr145325 17 56673356 to 56673392 36 + TSS region transcription start site region 145325
Tssr145326 17 56680545 to 56680552 7 + TSS region transcription start site region 145326
Tssr145327 17 56696727 to 56696749 22 + TSS region transcription start site region 145327
Tssr145328 17 56708858 to 56708868 10 + TSS region transcription start site region 145328
Tssr148830 17 56709840 to 56709889 49 - TSS region transcription start site region 148830
Tssr145329 17 56709906 to 56709934 28 + TSS region transcription start site region 145329
Tssr145330 17 56709936 to 56709975 39 + TSS region transcription start site region 145330
Tssr145331 17 56709981 to 56709992 11 + TSS region transcription start site region 145331
Tssr145332 17 56710004 to 56710017 13 + TSS region transcription start site region 145332
Tssr145333 17 56710028 to 56710039 11 + TSS region transcription start site region 145333
Tssr145334 17 56710064 to 56710071 7 + TSS region transcription start site region 145334
Tssr145335 17 56710942 to 56710954 12 + TSS region transcription start site region 145335
Ccpn-ps 17 56711695 to 56712652 957 - pseudogene calcyphosine, pseudogene
Vmac 17 56713932 to 56717699 3767 - protein coding gene vimentin-type intermediate filament associated coiled-coil protein
Cpgi9372 17 56716470 to 56718363 1893 CpG island CpG island 9372
Tssr148831 17 56716788 to 56716858 70 - TSS region transcription start site region 148831
Tssr148832 17 56717681 to 56717709 28 - TSS region transcription start site region 148832
Tssr145336 17 56717759 to 56717819 60 + TSS region transcription start site region 145336
Ndufa11 17 56717767 to 56722141 4374 + protein coding gene NADH:ubiquinone oxidoreductase subunit A11
Tssr148833 17 56718030 to 56718042 12 - TSS region transcription start site region 148833
Fut4-ps1 17 56734228 to 56739292 5064 + pseudogene fucosyltransferase 4, pseudogene 1
Tssr145337 17 56734826 to 56734841 15 + TSS region transcription start site region 145337
Cpgi9373 17 56740868 to 56741067 199 CpG island CpG island 9373
Cpgi9374 17 56751179 to 56752548 1369 CpG island CpG island 9374
Nrtn 17 56751325 to 56757530 6205 - protein coding gene neurturin
Cpgi9375 17 56753255 to 56753842 587 CpG island CpG island 9375
Cpgi9376 17 56754678 to 56755072 394 CpG island CpG island 9376
Cpgi9377 17 56756637 to 56758012 1375 CpG island CpG island 9377
Tssr148834 17 56757516 to 56757532 16 - TSS region transcription start site region 148834
Tssr148835 17 56757543 to 56757569 26 - TSS region transcription start site region 148835
Cpgi9378 17 56761902 to 56762359 457 CpG island CpG island 9378
Cpgi9379 17 56764491 to 56765271 780 CpG island CpG island 9379
Tssr145338 17 56764722 to 56764733 11 + TSS region transcription start site region 145338
Tssr145339 17 56764738 to 56764763 25 + TSS region transcription start site region 145339
Dus3l 17 56764757 to 56770093 5336 + protein coding gene dihydrouridine synthase 3-like (S. cerevisiae)
Tssr145340 17 56764767 to 56764798 31 + TSS region transcription start site region 145340
Tssr145341 17 56764805 to 56764845 40 + TSS region transcription start site region 145341
Tssr145342 17 56770258 to 56770305 47 + TSS region transcription start site region 145342
Prr22 17 56770276 to 56772134 1858 + protein coding gene proline rich 22
Rfx2 17 56775897 to 56831008 55111 - protein coding gene regulatory factor X, 2 (influences HLA class II expression)
Gm41604 17 56791989 to 56796267 4278 + lncRNA gene predicted gene, 41604
Tssr145343 17 56793904 to 56793917 13 + TSS region transcription start site region 145343
Tssr148836 17 56794712 to 56794717 5 - TSS region transcription start site region 148836
Cpgi9380 17 56829792 to 56830236 444 CpG island CpG island 9380
Cpgi9381 17 56830456 to 56831739 1283 CpG island CpG island 9381
Tssr148837 17 56830916 to 56831005 89 - TSS region transcription start site region 148837
Tssr148838 17 56831058 to 56831128 70 - TSS region transcription start site region 148838
Tssr145344 17 56831353 to 56831367 14 + TSS region transcription start site region 145344
Tssr145345 17 56831676 to 56831680 4 + TSS region transcription start site region 145345
Acsbg2 17 56843103 to 56874447 31344 - protein coding gene acyl-CoA synthetase bubblegum family member 2
Tssr145346 17 56861532 to 56861542 10 + TSS region transcription start site region 145346
Tssr145347 17 56861549 to 56861561 12 + TSS region transcription start site region 145347
Tssr5178 17 56866330 to 56866344 14 + TSS region transcription start site region 5178
Tssr148839 17 56874395 to 56874398 3 - TSS region transcription start site region 148839
Tssr148840 17 56874400 to 56874414 14 - TSS region transcription start site region 148840
Tssr148841 17 56874421 to 56874460 39 - TSS region transcription start site region 148841
Tssr145348 17 56875471 to 56875489 18 + TSS region transcription start site region 145348
1700061G19Rik 17 56875477 to 56888904 13427 + protein coding gene RIKEN cDNA 1700061G19 gene
Tssr145349 17 56875498 to 56875507 9 + TSS region transcription start site region 145349
Tssr145350 17 56875509 to 56875518 9 + TSS region transcription start site region 145350
Tssr145351 17 56875523 to 56875535 12 + TSS region transcription start site region 145351
Tssr145352 17 56877127 to 56877140 13 + TSS region transcription start site region 145352
Tssr145353 17 56878637 to 56878640 3 + TSS region transcription start site region 145353
Cpgi9382 17 56883216 to 56883962 746 CpG island CpG island 9382
Tssr148842 17 56883851 to 56883862 11 - TSS region transcription start site region 148842
Tssr145354 17 56883973 to 56884019 46 + TSS region transcription start site region 145354
Mllt1 17 56892611 to 56935415 42804 - protein coding gene myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1
Tssr148843 17 56905799 to 56905805 6 - TSS region transcription start site region 148843
Tssr148844 17 56906218 to 56906234 16 - TSS region transcription start site region 148844
Tssr145355 17 56931699 to 56931708 9 + TSS region transcription start site region 145355
Cpgi9383 17 56934785 to 56936014 1229 CpG island CpG island 9383
Tssr148845 17 56935413 to 56935504 91 - TSS region transcription start site region 148845
Acer1 17 56953490 to 56982126 28636 - protein coding gene alkaline ceramidase 1
Gm49887 17 56958320 to 56959424 1104 + lincRNA gene predicted gene, 49887
D17Mit158.1 17 56976288 to 56976399 111 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 158.1
D17Mit158 17 56976380 to 56976491 111 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 158
D17Mit158.3 17 56976472 to 56976631 159 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 158.3
Tssr145356 17 56981320 to 56981329 9 + TSS region transcription start site region 145356
Tssr148846 17 56982104 to 56982118 14 - TSS region transcription start site region 148846
Tssr148847 17 56982120 to 56982161 41 - TSS region transcription start site region 148847
Gm33509 17 56988162 to 56990107 1945 - lncRNA gene predicted gene, 33509
Cpgi9384 17 56989763 to 56990819 1056 CpG island CpG island 9384