Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:56424928-56794939

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ptprs 17 56412426 to 56476480 64054 - protein coding gene protein tyrosine phosphatase, receptor type, S
Cpgi9358 17 56424886 to 56426490 1604 CpG island CpG island 9358
Tssr148798 17 56425134 to 56425181 47 - TSS region transcription start site region 148798
Tssr148799 17 56425654 to 56425724 70 - TSS region transcription start site region 148799
Tssr145305 17 56425659 to 56425662 3 + TSS region transcription start site region 145305
9630010G10Rik 17 56430348 to 56432476 2128 unclassified gene RIKEN cDNA 9630010G10 gene
Tssr148800 17 56434589 to 56434593 4 - TSS region transcription start site region 148800
Tssr148801 17 56436100 to 56436127 27 - TSS region transcription start site region 148801
Tssr148802 17 56440216 to 56440232 16 - TSS region transcription start site region 148802
Tssr148803 17 56441936 to 56441940 4 - TSS region transcription start site region 148803
Tssr148804 17 56454961 to 56454973 12 - TSS region transcription start site region 148804
Tssr148805 17 56455693 to 56455696 3 - TSS region transcription start site region 148805
Cpgi9359 17 56461637 to 56463063 1426 CpG island CpG island 9359
Tssr148806 17 56461825 to 56461869 44 - TSS region transcription start site region 148806
Tssr148807 17 56462143 to 56462243 100 - TSS region transcription start site region 148807
Tssr148808 17 56462370 to 56462385 15 - TSS region transcription start site region 148808
4930553P13Rik 17 56462725 to 56463772 1047 unclassified gene RIKEN cDNA 4930553P13 gene
Gm33032 17 56467113 to 56470116 3003 + lncRNA gene predicted gene, 33032
Tssr145306 17 56469048 to 56469078 30 + TSS region transcription start site region 145306
Cpgi9360 17 56472393 to 56473540 1147 CpG island CpG island 9360
Tssr5176 17 56472876 to 56472922 46 - TSS region transcription start site region 5176
Cpgi9361 17 56473789 to 56474719 930 CpG island CpG island 9361
Gm9258 17 56475348 to 56476273 925 - unclassified gene predicted gene 9258
Cpgi9362 17 56475494 to 56476759 1265 CpG island CpG island 9362
Tssr148809 17 56476366 to 56476460 94 - TSS region transcription start site region 148809
Tssr148810 17 56476462 to 56476480 18 - TSS region transcription start site region 148810
Tssr148811 17 56476486 to 56476493 7 - TSS region transcription start site region 148811
Tssr148812 17 56476507 to 56476517 10 - TSS region transcription start site region 148812
Gm32822 17 56476558 to 56482200 5642 + lncRNA gene predicted gene, 32822
Gm33089 17 56485573 to 56489445 3872 + lncRNA gene predicted gene, 33089
Brwt6 17 56492415 to 56492415 0 QTL brain weight 6
Gm33211 17 56500168 to 56501574 1406 - lncRNA gene predicted gene, 33211
Gm33258 17 56506823 to 56509666 2843 + lncRNA gene predicted gene, 33258
Cpgi9363 17 56506972 to 56508145 1173 CpG island CpG island 9363
Cpgi9364 17 56510390 to 56512666 2276 CpG island CpG island 9364
Znrf4 17 56511248 to 56512431 1183 - protein coding gene zinc and ring finger 4
Tssr148813 17 56512422 to 56512434 12 - TSS region transcription start site region 148813
Tssr148814 17 56512449 to 56512465 16 - TSS region transcription start site region 148814
Tssr148815 17 56512476 to 56512509 33 - TSS region transcription start site region 148815
Gm20219 17 56551414 to 56554387 2973 - lncRNA gene predicted gene, 20219
Tssr148816 17 56554382 to 56554426 44 - TSS region transcription start site region 148816
Safb2 17 56560965 to 56584585 23620 - protein coding gene scaffold attachment factor B2
Tssr148817 17 56571234 to 56571264 30 - TSS region transcription start site region 148817
Tssr148818 17 56571500 to 56571513 13 - TSS region transcription start site region 148818
Cpgi9365 17 56583696 to 56585776 2080 CpG island CpG island 9365
Tssr148819 17 56584309 to 56584323 14 - TSS region transcription start site region 148819
Tssr148820 17 56584507 to 56584568 61 - TSS region transcription start site region 148820
Tssr148821 17 56584594 to 56584605 11 - TSS region transcription start site region 148821
Tssr145307 17 56584822 to 56584827 5 + TSS region transcription start site region 145307
Safb 17 56584830 to 56606294 21464 + protein coding gene scaffold attachment factor B
Tssr145308 17 56584923 to 56584932 9 + TSS region transcription start site region 145308
Tssr145309 17 56584948 to 56584959 11 + TSS region transcription start site region 145309
Tssr145310 17 56584961 to 56584968 7 + TSS region transcription start site region 145310
Tssr145311 17 56584973 to 56585031 58 + TSS region transcription start site region 145311
Tssr145312 17 56593947 to 56593961 14 + TSS region transcription start site region 145312
Cpgi9366 17 56603531 to 56603829 298 CpG island CpG island 9366
Micos13 17 56607452 to 56609771 2319 - protein coding gene mitochondrial contact site and cristae organizing system subunit 13
Cpgi9367 17 56609322 to 56610299 977 CpG island CpG island 9367
Tssr148822 17 56609675 to 56609686 11 - TSS region transcription start site region 148822
Tssr148823 17 56609689 to 56609715 26 - TSS region transcription start site region 148823
Tssr148824 17 56609804 to 56609819 15 - TSS region transcription start site region 148824
Tssr148825 17 56609823 to 56609834 11 - TSS region transcription start site region 148825
Tssr145313 17 56609885 to 56609916 31 + TSS region transcription start site region 145313
Tssr148826 17 56609928 to 56609939 11 - TSS region transcription start site region 148826
Tssr148827 17 56609958 to 56609971 13 - TSS region transcription start site region 148827
Tssr148828 17 56609988 to 56610005 17 - TSS region transcription start site region 148828
Gm46588 17 56610006 to 56610751 745 + lncRNA gene predicted gene, 46588
Cpgi9368 17 56613235 to 56614360 1125 CpG island CpG island 9368
Tssr145314 17 56613355 to 56613358 3 + TSS region transcription start site region 145314
Tssr145315 17 56613392 to 56613425 33 + TSS region transcription start site region 145315
Rpl36 17 56613416 to 56614243 827 + protein coding gene ribosomal protein L36
Tssr145316 17 56613436 to 56613477 41 + TSS region transcription start site region 145316
Tssr5177 17 56613498 to 56613501 3 + TSS region transcription start site region 5177
Lonp1 17 56614297 to 56626887 12590 - protein coding gene lon peptidase 1, mitochondrial
Cpgi9369 17 56626282 to 56627793 1511 CpG island CpG island 9369
Tssr148829 17 56626872 to 56626893 21 - TSS region transcription start site region 148829
Tssr145317 17 56628118 to 56628148 30 + TSS region transcription start site region 145317
Catsperd 17 56628143 to 56664456 36313 + protein coding gene cation channel sperm associated auxiliary subunit delta
Tssr145318 17 56628157 to 56628171 14 + TSS region transcription start site region 145318
Tssr145319 17 56638263 to 56638267 4 + TSS region transcription start site region 145319
D17Mit239 17 56644471 to 56644576 105 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 239
Tssr145320 17 56647735 to 56647766 31 + TSS region transcription start site region 145320
Gm33461 17 56659459 to 56664026 4567 - lncRNA gene predicted gene, 33461
Tssr145321 17 56659693 to 56659698 5 + TSS region transcription start site region 145321
Cpgi9370 17 56668551 to 56669076 525 CpG island CpG island 9370
Cpgi9371 17 56672849 to 56674139 1290 CpG island CpG island 9371
Tssr145322 17 56673223 to 56673232 9 + TSS region transcription start site region 145322
Tssr145323 17 56673273 to 56673287 14 + TSS region transcription start site region 145323
Ranbp3 17 56673294 to 56711764 38470 + protein coding gene RAN binding protein 3
Tssr145324 17 56673321 to 56673328 7 + TSS region transcription start site region 145324
Tssr145325 17 56673356 to 56673392 36 + TSS region transcription start site region 145325
Tssr145326 17 56680545 to 56680552 7 + TSS region transcription start site region 145326
Tssr145327 17 56696727 to 56696749 22 + TSS region transcription start site region 145327
Tssr145328 17 56708858 to 56708868 10 + TSS region transcription start site region 145328
Tssr148830 17 56709840 to 56709889 49 - TSS region transcription start site region 148830
Tssr145329 17 56709906 to 56709934 28 + TSS region transcription start site region 145329
Tssr145330 17 56709936 to 56709975 39 + TSS region transcription start site region 145330
Tssr145331 17 56709981 to 56709992 11 + TSS region transcription start site region 145331
Tssr145332 17 56710004 to 56710017 13 + TSS region transcription start site region 145332
Tssr145333 17 56710028 to 56710039 11 + TSS region transcription start site region 145333
Tssr145334 17 56710064 to 56710071 7 + TSS region transcription start site region 145334
Tssr145335 17 56710942 to 56710954 12 + TSS region transcription start site region 145335
Ccpn-ps 17 56711695 to 56712652 957 - pseudogene calcyphosine, pseudogene
Vmac 17 56713932 to 56717699 3767 - protein coding gene vimentin-type intermediate filament associated coiled-coil protein
Cpgi9372 17 56716470 to 56718363 1893 CpG island CpG island 9372
Tssr148831 17 56716788 to 56716858 70 - TSS region transcription start site region 148831
Tssr148832 17 56717681 to 56717709 28 - TSS region transcription start site region 148832
Tssr145336 17 56717759 to 56717819 60 + TSS region transcription start site region 145336
Ndufa11 17 56717767 to 56722141 4374 + protein coding gene NADH:ubiquinone oxidoreductase subunit A11
Tssr148833 17 56718030 to 56718042 12 - TSS region transcription start site region 148833
Fut4-ps1 17 56734228 to 56739292 5064 + pseudogene fucosyltransferase 4, pseudogene 1
Tssr145337 17 56734826 to 56734841 15 + TSS region transcription start site region 145337
Cpgi9373 17 56740868 to 56741067 199 CpG island CpG island 9373
Cpgi9374 17 56751179 to 56752548 1369 CpG island CpG island 9374
Nrtn 17 56751325 to 56757530 6205 - protein coding gene neurturin
Cpgi9375 17 56753255 to 56753842 587 CpG island CpG island 9375
Cpgi9376 17 56754678 to 56755072 394 CpG island CpG island 9376
Cpgi9377 17 56756637 to 56758012 1375 CpG island CpG island 9377
Tssr148834 17 56757516 to 56757532 16 - TSS region transcription start site region 148834
Tssr148835 17 56757543 to 56757569 26 - TSS region transcription start site region 148835
Cpgi9378 17 56761902 to 56762359 457 CpG island CpG island 9378
Cpgi9379 17 56764491 to 56765271 780 CpG island CpG island 9379
Tssr145338 17 56764722 to 56764733 11 + TSS region transcription start site region 145338
Tssr145339 17 56764738 to 56764763 25 + TSS region transcription start site region 145339
Dus3l 17 56764757 to 56770093 5336 + protein coding gene dihydrouridine synthase 3-like (S. cerevisiae)
Tssr145340 17 56764767 to 56764798 31 + TSS region transcription start site region 145340
Tssr145341 17 56764805 to 56764845 40 + TSS region transcription start site region 145341
Tssr145342 17 56770258 to 56770305 47 + TSS region transcription start site region 145342
Prr22 17 56770276 to 56772134 1858 + protein coding gene proline rich 22
Rfx2 17 56775897 to 56831008 55111 - protein coding gene regulatory factor X, 2 (influences HLA class II expression)
Gm41604 17 56791989 to 56796267 4278 + lncRNA gene predicted gene, 41604
Tssr145343 17 56793904 to 56793917 13 + TSS region transcription start site region 145343
Tssr148836 17 56794712 to 56794717 5 - TSS region transcription start site region 148836