Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:56126045-56526097

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125 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sema6b 17 56123085 to 56140343 17258 - protein coding gene sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B
Cpgi9342 17 56128276 to 56128499 223 CpG island CpG island 9342
Tssr148763 17 56133759 to 56133780 21 - TSS region transcription start site region 148763
Tssr148764 17 56133785 to 56133797 12 - TSS region transcription start site region 148764
Tssr148765 17 56133817 to 56133854 37 - TSS region transcription start site region 148765
Tssr148766 17 56133887 to 56133911 24 - TSS region transcription start site region 148766
Tssr148767 17 56133932 to 56133941 9 - TSS region transcription start site region 148767
Tssr145286 17 56134268 to 56134282 14 + TSS region transcription start site region 145286
Cpgi9343 17 56134399 to 56134985 586 CpG island CpG island 9343
Cpgi9344 17 56139267 to 56141162 1895 CpG island CpG island 9344
Tssr148768 17 56140314 to 56140327 13 - TSS region transcription start site region 148768
Tssr148769 17 56140333 to 56140384 51 - TSS region transcription start site region 148769
Tssr148770 17 56140389 to 56140408 19 - TSS region transcription start site region 148770
Cpgi9345 17 56141692 to 56142584 892 CpG island CpG island 9345
Cpgi9346 17 56148748 to 56149091 343 CpG island CpG island 9346
Cpgi9347 17 56162137 to 56162664 527 CpG island CpG island 9347
Tssr145287 17 56162486 to 56162549 63 + TSS region transcription start site region 145287
Tnfaip8l1 17 56162491 to 56173955 11464 + protein coding gene tumor necrosis factor, alpha-induced protein 8-like 1
Tssr145288 17 56162552 to 56162567 15 + TSS region transcription start site region 145288
Gm44397 17 56172013 to 56172125 112 - miRNA gene predicted gene, 44397
Mydgf 17 56176541 to 56183920 7379 - protein coding gene myeloid derived growth factor
Cpgi9348 17 56183358 to 56184208 850 CpG island CpG island 9348
Tssr148771 17 56183887 to 56183938 51 - TSS region transcription start site region 148771
Dpp9 17 56186807 to 56218905 32098 - protein coding gene dipeptidylpeptidase 9
Cpgi9349 17 56217969 to 56219486 1517 CpG island CpG island 9349
Tssr148772 17 56218562 to 56218637 75 - TSS region transcription start site region 148772
Tssr148773 17 56218816 to 56218874 58 - TSS region transcription start site region 148773
Tssr148774 17 56218881 to 56218922 41 - TSS region transcription start site region 148774
Tssr145289 17 56225191 to 56225204 13 + TSS region transcription start site region 145289
Gm49879 17 56238909 to 56239361 452 + pseudogene predicted gene, 49879
Cpgi9350 17 56241714 to 56242284 570 CpG island CpG island 9350
A230051N06Rik 17 56241717 to 56242805 1088 + lincRNA gene RIKEN cDNA A230051N06 gene
Tssr145290 17 56241740 to 56241751 11 + TSS region transcription start site region 145290
Tssr145291 17 56241752 to 56241786 34 + TSS region transcription start site region 145291
Mir7b 17 56242988 to 56243098 110 + miRNA gene microRNA 7b
Cpgi9351 17 56255847 to 56256299 452 CpG island CpG island 9351
Cpgi9352 17 56256541 to 56257954 1413 CpG island CpG island 9352
Tssr145292 17 56256802 to 56256836 34 + TSS region transcription start site region 145292
Fem1a 17 56256810 to 56263610 6800 + protein coding gene feminization 1 homolog a (C. elegans)
Tssr145293 17 56265827 to 56265831 4 + TSS region transcription start site region 145293
Ticam1 17 56269462 to 56276767 7305 - protein coding gene toll-like receptor adaptor molecule 1
Tssr148775 17 56271249 to 56271263 14 - TSS region transcription start site region 148775
Tssr148776 17 56276703 to 56276714 11 - TSS region transcription start site region 148776
Tssr148777 17 56276718 to 56276749 31 - TSS region transcription start site region 148777
Tssr148778 17 56276750 to 56276773 23 - TSS region transcription start site region 148778
Plin3 17 56278962 to 56290511 11549 - protein coding gene perilipin 3
Tssr148779 17 56287863 to 56287866 3 - TSS region transcription start site region 148779
Tssr148780 17 56287880 to 56287909 29 - TSS region transcription start site region 148780
Tssr148781 17 56287925 to 56287954 29 - TSS region transcription start site region 148781
Tssr148782 17 56287957 to 56288001 44 - TSS region transcription start site region 148782
Tssr145294 17 56289576 to 56289579 3 + TSS region transcription start site region 145294
Tssr148783 17 56290065 to 56290084 19 - TSS region transcription start site region 148783
Cpgi9353 17 56290346 to 56290631 285 CpG island CpG island 9353
Tssr148784 17 56290476 to 56290482 6 - TSS region transcription start site region 148784
Tssr148785 17 56290499 to 56290529 30 - TSS region transcription start site region 148785
Cpgi9354 17 56291313 to 56291630 317 CpG island CpG island 9354
Arrdc5 17 56294111 to 56300286 6175 - protein coding gene arrestin domain containing 5
Cpgi9355 17 56294284 to 56294548 264 CpG island CpG island 9355
Tssr148786 17 56300229 to 56300248 19 - TSS region transcription start site region 148786
Tssr148787 17 56300252 to 56300270 18 - TSS region transcription start site region 148787
Tssr148788 17 56300288 to 56300297 9 - TSS region transcription start site region 148788
Tssr148789 17 56301162 to 56301202 40 - TSS region transcription start site region 148789
Cpgi9356 17 56303216 to 56304658 1442 CpG island CpG island 9356
Tssr145295 17 56303331 to 56303349 18 + TSS region transcription start site region 145295
Uhrf1 17 56303337 to 56323486 20149 + protein coding gene ubiquitin-like, containing PHD and RING finger domains, 1
Tssr145296 17 56303353 to 56303378 25 + TSS region transcription start site region 145296
Tssr145297 17 56303396 to 56303418 22 + TSS region transcription start site region 145297
Tssr145298 17 56303427 to 56303467 40 + TSS region transcription start site region 145298
Tssr145299 17 56304204 to 56304221 17 + TSS region transcription start site region 145299
Tssr145300 17 56304228 to 56304247 19 + TSS region transcription start site region 145300
Tssr145301 17 56304263 to 56304274 11 + TSS region transcription start site region 145301
Tssr145302 17 56304339 to 56304355 16 + TSS region transcription start site region 145302
Cpgi9357 17 56325461 to 56326584 1123 CpG island CpG island 9357
Tssr145303 17 56326045 to 56326097 52 + TSS region transcription start site region 145303
Kdm4b 17 56326062 to 56402870 76808 + protein coding gene lysine (K)-specific demethylase 4B
Tssr145304 17 56372438 to 56372448 10 + TSS region transcription start site region 145304
Gm32715 17 56376322 to 56388658 12336 - lncRNA gene predicted gene, 32715
Tssr148790 17 56388326 to 56388343 17 - TSS region transcription start site region 148790
Ptprs 17 56412426 to 56476480 64054 - protein coding gene protein tyrosine phosphatase, receptor type, S
Tssr148791 17 56412761 to 56412773 12 - TSS region transcription start site region 148791
Tssr148792 17 56412992 to 56412997 5 - TSS region transcription start site region 148792
Tssr148793 17 56413077 to 56413123 46 - TSS region transcription start site region 148793
Tssr148794 17 56417347 to 56417357 10 - TSS region transcription start site region 148794
Mir6977 17 56418846 to 56418909 63 - miRNA gene microRNA 6977
Tssr148795 17 56422702 to 56422737 35 - TSS region transcription start site region 148795
Tssr148796 17 56423227 to 56423249 22 - TSS region transcription start site region 148796
Tssr148797 17 56423328 to 56423344 16 - TSS region transcription start site region 148797
Cpgi9358 17 56424886 to 56426490 1604 CpG island CpG island 9358
Tssr148798 17 56425134 to 56425181 47 - TSS region transcription start site region 148798
Tssr148799 17 56425654 to 56425724 70 - TSS region transcription start site region 148799
Tssr145305 17 56425659 to 56425662 3 + TSS region transcription start site region 145305
9630010G10Rik 17 56430348 to 56432476 2128 unclassified gene RIKEN cDNA 9630010G10 gene
Tssr148800 17 56434589 to 56434593 4 - TSS region transcription start site region 148800
Tssr148801 17 56436100 to 56436127 27 - TSS region transcription start site region 148801
Tssr148802 17 56440216 to 56440232 16 - TSS region transcription start site region 148802
Tssr148803 17 56441936 to 56441940 4 - TSS region transcription start site region 148803
Tssr148804 17 56454961 to 56454973 12 - TSS region transcription start site region 148804
Tssr148805 17 56455693 to 56455696 3 - TSS region transcription start site region 148805
Cpgi9359 17 56461637 to 56463063 1426 CpG island CpG island 9359
Tssr148806 17 56461825 to 56461869 44 - TSS region transcription start site region 148806
Tssr148807 17 56462143 to 56462243 100 - TSS region transcription start site region 148807
Tssr148808 17 56462370 to 56462385 15 - TSS region transcription start site region 148808
4930553P13Rik 17 56462725 to 56463772 1047 unclassified gene RIKEN cDNA 4930553P13 gene
Gm33032 17 56467113 to 56470116 3003 + lncRNA gene predicted gene, 33032
Tssr145306 17 56469048 to 56469078 30 + TSS region transcription start site region 145306
Cpgi9360 17 56472393 to 56473540 1147 CpG island CpG island 9360
Tssr5176 17 56472876 to 56472922 46 - TSS region transcription start site region 5176
Cpgi9361 17 56473789 to 56474719 930 CpG island CpG island 9361
Gm9258 17 56475348 to 56476273 925 - unclassified gene predicted gene 9258
Cpgi9362 17 56475494 to 56476759 1265 CpG island CpG island 9362
Tssr148809 17 56476366 to 56476460 94 - TSS region transcription start site region 148809
Tssr148810 17 56476462 to 56476480 18 - TSS region transcription start site region 148810
Tssr148811 17 56476486 to 56476493 7 - TSS region transcription start site region 148811
Tssr148812 17 56476507 to 56476517 10 - TSS region transcription start site region 148812
Gm32822 17 56476558 to 56482200 5642 + lncRNA gene predicted gene, 32822
Gm33089 17 56485573 to 56489445 3872 + lncRNA gene predicted gene, 33089
Brwt6 17 56492415 to 56492415 0 QTL brain weight 6
Gm33211 17 56500168 to 56501574 1406 - lncRNA gene predicted gene, 33211
Gm33258 17 56506823 to 56509666 2843 + lncRNA gene predicted gene, 33258
Cpgi9363 17 56506972 to 56508145 1173 CpG island CpG island 9363
Cpgi9364 17 56510390 to 56512666 2276 CpG island CpG island 9364
Znrf4 17 56511248 to 56512431 1183 - protein coding gene zinc and ring finger 4
Tssr148813 17 56512422 to 56512434 12 - TSS region transcription start site region 148813
Tssr148814 17 56512449 to 56512465 16 - TSS region transcription start site region 148814
Tssr148815 17 56512476 to 56512509 33 - TSS region transcription start site region 148815