Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:56088909-56389361

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113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hdgfl2 17 56079634 to 56100607 20973 + protein coding gene HDGF like 2
n-TEctc4 17 56092001 to 56092072 71 - tRNA gene nuclear encoded tRNA glutamic acid 4 (anticodon CTC)
Tssr145285 17 56092505 to 56092507 2 + TSS region transcription start site region 145285
Plin4 17 56100591 to 56109803 9212 - protein coding gene perilipin 4
Tssr5173 17 56103245 to 56103263 18 - TSS region transcription start site region 5173
Tssr148740 17 56108657 to 56108678 21 - TSS region transcription start site region 148740
Tssr148741 17 56109717 to 56109737 20 - TSS region transcription start site region 148741
Tssr148742 17 56109744 to 56109755 11 - TSS region transcription start site region 148742
Tssr148743 17 56109756 to 56109767 11 - TSS region transcription start site region 148743
Tssr148744 17 56109775 to 56109794 19 - TSS region transcription start site region 148744
Tssr148745 17 56109800 to 56109806 6 - TSS region transcription start site region 148745
Tssr148746 17 56109815 to 56109824 9 - TSS region transcription start site region 148746
Plin5 17 56111601 to 56117596 5995 - protein coding gene perilipin 5
Cpgi9339 17 56117182 to 56117727 545 CpG island CpG island 9339
Tssr148747 17 56117265 to 56117283 18 - TSS region transcription start site region 148747
Tssr148748 17 56117537 to 56117551 14 - TSS region transcription start site region 148748
Tssr148749 17 56117577 to 56117588 11 - TSS region transcription start site region 148749
Lrg1 17 56119678 to 56121946 2268 - protein coding gene leucine-rich alpha-2-glycoprotein 1
Cpgi9340 17 56119796 to 56120927 1131 CpG island CpG island 9340
Tssr148750 17 56120116 to 56120131 15 - TSS region transcription start site region 148750
Tssr5174 17 56120194 to 56120215 21 + TSS region transcription start site region 5174
Tssr148751 17 56120293 to 56120314 21 - TSS region transcription start site region 148751
Tssr148752 17 56120348 to 56120366 18 - TSS region transcription start site region 148752
Tssr148753 17 56120613 to 56120620 7 - TSS region transcription start site region 148753
Tssr148754 17 56120671 to 56120681 10 - TSS region transcription start site region 148754
Tssr148755 17 56120793 to 56120818 25 - TSS region transcription start site region 148755
Tssr148756 17 56120832 to 56120848 16 - TSS region transcription start site region 148756
Tssr148757 17 56121010 to 56121028 18 - TSS region transcription start site region 148757
Tssr148758 17 56121030 to 56121063 33 - TSS region transcription start site region 148758
Tssr148759 17 56121897 to 56121920 23 - TSS region transcription start site region 148759
Tssr5175 17 56121924 to 56121942 18 - TSS region transcription start site region 5175
Tssr148760 17 56121951 to 56121958 7 - TSS region transcription start site region 148760
Tssr148761 17 56121965 to 56121986 21 - TSS region transcription start site region 148761
Tssr148762 17 56121994 to 56122001 7 - TSS region transcription start site region 148762
Sema6b 17 56123085 to 56140343 17258 - protein coding gene sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B
Cpgi9341 17 56123431 to 56125079 1648 CpG island CpG island 9341
Cpgi9342 17 56128276 to 56128499 223 CpG island CpG island 9342
Tssr148763 17 56133759 to 56133780 21 - TSS region transcription start site region 148763
Tssr148764 17 56133785 to 56133797 12 - TSS region transcription start site region 148764
Tssr148765 17 56133817 to 56133854 37 - TSS region transcription start site region 148765
Tssr148766 17 56133887 to 56133911 24 - TSS region transcription start site region 148766
Tssr148767 17 56133932 to 56133941 9 - TSS region transcription start site region 148767
Tssr145286 17 56134268 to 56134282 14 + TSS region transcription start site region 145286
Cpgi9343 17 56134399 to 56134985 586 CpG island CpG island 9343
Cpgi9344 17 56139267 to 56141162 1895 CpG island CpG island 9344
Tssr148768 17 56140314 to 56140327 13 - TSS region transcription start site region 148768
Tssr148769 17 56140333 to 56140384 51 - TSS region transcription start site region 148769
Tssr148770 17 56140389 to 56140408 19 - TSS region transcription start site region 148770
Cpgi9345 17 56141692 to 56142584 892 CpG island CpG island 9345
Cpgi9346 17 56148748 to 56149091 343 CpG island CpG island 9346
Cpgi9347 17 56162137 to 56162664 527 CpG island CpG island 9347
Tssr145287 17 56162486 to 56162549 63 + TSS region transcription start site region 145287
Tnfaip8l1 17 56162491 to 56173955 11464 + protein coding gene tumor necrosis factor, alpha-induced protein 8-like 1
Tssr145288 17 56162552 to 56162567 15 + TSS region transcription start site region 145288
Gm44397 17 56172013 to 56172125 112 - miRNA gene predicted gene, 44397
Mydgf 17 56176541 to 56183920 7379 - protein coding gene myeloid derived growth factor
Cpgi9348 17 56183358 to 56184208 850 CpG island CpG island 9348
Tssr148771 17 56183887 to 56183938 51 - TSS region transcription start site region 148771
Dpp9 17 56186807 to 56218905 32098 - protein coding gene dipeptidylpeptidase 9
Cpgi9349 17 56217969 to 56219486 1517 CpG island CpG island 9349
Tssr148772 17 56218562 to 56218637 75 - TSS region transcription start site region 148772
Tssr148773 17 56218816 to 56218874 58 - TSS region transcription start site region 148773
Tssr148774 17 56218881 to 56218922 41 - TSS region transcription start site region 148774
Tssr145289 17 56225191 to 56225204 13 + TSS region transcription start site region 145289
Gm49879 17 56238909 to 56239361 452 + pseudogene predicted gene, 49879
Cpgi9350 17 56241714 to 56242284 570 CpG island CpG island 9350
A230051N06Rik 17 56241717 to 56242805 1088 + lincRNA gene RIKEN cDNA A230051N06 gene
Tssr145290 17 56241740 to 56241751 11 + TSS region transcription start site region 145290
Tssr145291 17 56241752 to 56241786 34 + TSS region transcription start site region 145291
Mir7b 17 56242988 to 56243098 110 + miRNA gene microRNA 7b
Cpgi9351 17 56255847 to 56256299 452 CpG island CpG island 9351
Cpgi9352 17 56256541 to 56257954 1413 CpG island CpG island 9352
Tssr145292 17 56256802 to 56256836 34 + TSS region transcription start site region 145292
Fem1a 17 56256810 to 56263610 6800 + protein coding gene feminization 1 homolog a (C. elegans)
Tssr145293 17 56265827 to 56265831 4 + TSS region transcription start site region 145293
Ticam1 17 56269462 to 56276767 7305 - protein coding gene toll-like receptor adaptor molecule 1
Tssr148775 17 56271249 to 56271263 14 - TSS region transcription start site region 148775
Tssr148776 17 56276703 to 56276714 11 - TSS region transcription start site region 148776
Tssr148777 17 56276718 to 56276749 31 - TSS region transcription start site region 148777
Tssr148778 17 56276750 to 56276773 23 - TSS region transcription start site region 148778
Plin3 17 56278962 to 56290511 11549 - protein coding gene perilipin 3
Tssr148779 17 56287863 to 56287866 3 - TSS region transcription start site region 148779
Tssr148780 17 56287880 to 56287909 29 - TSS region transcription start site region 148780
Tssr148781 17 56287925 to 56287954 29 - TSS region transcription start site region 148781
Tssr148782 17 56287957 to 56288001 44 - TSS region transcription start site region 148782
Tssr145294 17 56289576 to 56289579 3 + TSS region transcription start site region 145294
Tssr148783 17 56290065 to 56290084 19 - TSS region transcription start site region 148783
Cpgi9353 17 56290346 to 56290631 285 CpG island CpG island 9353
Tssr148784 17 56290476 to 56290482 6 - TSS region transcription start site region 148784
Tssr148785 17 56290499 to 56290529 30 - TSS region transcription start site region 148785
Cpgi9354 17 56291313 to 56291630 317 CpG island CpG island 9354
Arrdc5 17 56294111 to 56300286 6175 - protein coding gene arrestin domain containing 5
Cpgi9355 17 56294284 to 56294548 264 CpG island CpG island 9355
Tssr148786 17 56300229 to 56300248 19 - TSS region transcription start site region 148786
Tssr148787 17 56300252 to 56300270 18 - TSS region transcription start site region 148787
Tssr148788 17 56300288 to 56300297 9 - TSS region transcription start site region 148788
Tssr148789 17 56301162 to 56301202 40 - TSS region transcription start site region 148789
Cpgi9356 17 56303216 to 56304658 1442 CpG island CpG island 9356
Tssr145295 17 56303331 to 56303349 18 + TSS region transcription start site region 145295
Uhrf1 17 56303337 to 56323486 20149 + protein coding gene ubiquitin-like, containing PHD and RING finger domains, 1
Tssr145296 17 56303353 to 56303378 25 + TSS region transcription start site region 145296
Tssr145297 17 56303396 to 56303418 22 + TSS region transcription start site region 145297
Tssr145298 17 56303427 to 56303467 40 + TSS region transcription start site region 145298
Tssr145299 17 56304204 to 56304221 17 + TSS region transcription start site region 145299
Tssr145300 17 56304228 to 56304247 19 + TSS region transcription start site region 145300
Tssr145301 17 56304263 to 56304274 11 + TSS region transcription start site region 145301
Tssr145302 17 56304339 to 56304355 16 + TSS region transcription start site region 145302
Cpgi9357 17 56325461 to 56326584 1123 CpG island CpG island 9357
Tssr145303 17 56326045 to 56326097 52 + TSS region transcription start site region 145303
Kdm4b 17 56326062 to 56402870 76808 + protein coding gene lysine (K)-specific demethylase 4B
Tssr145304 17 56372438 to 56372448 10 + TSS region transcription start site region 145304
Gm32715 17 56376322 to 56388658 12336 - lncRNA gene predicted gene, 32715
Tssr148790 17 56388326 to 56388343 17 - TSS region transcription start site region 148790