Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:55975424-56105445

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52 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shd 17 55970467 to 55976625 6158 + protein coding gene src homology 2 domain-containing transforming protein D
Cpgi9332 17 55986377 to 55986891 514 CpG island CpG island 9332
Tssr145267 17 55986466 to 55986491 25 + TSS region transcription start site region 145267
Tssr145268 17 55986494 to 55986531 37 + TSS region transcription start site region 145268
Fsd1 17 55986509 to 55996881 10372 + protein coding gene fibronectin type 3 and SPRY domain-containing protein
Tssr145269 17 55986538 to 55986549 11 + TSS region transcription start site region 145269
Stap2 17 55997077 to 56005584 8507 - protein coding gene signal transducing adaptor family member 2
Cpgi9333 17 55999771 to 56000726 955 CpG island CpG island 9333
Tssr148727 17 56000162 to 56000173 11 - TSS region transcription start site region 148727
Tssr148728 17 56000230 to 56000281 51 - TSS region transcription start site region 148728
Tssr148729 17 56005558 to 56005565 7 - TSS region transcription start site region 148729
Tssr148730 17 56005566 to 56005597 31 - TSS region transcription start site region 148730
Tssr145270 17 56005672 to 56005712 40 + TSS region transcription start site region 145270
Tssr148731 17 56005889 to 56005911 22 - TSS region transcription start site region 148731
Tssr148732 17 56008354 to 56008388 34 - TSS region transcription start site region 148732
Cpgi9334 17 56008380 to 56009735 1355 CpG island CpG island 9334
Tssr145271 17 56008565 to 56008590 25 + TSS region transcription start site region 145271
Mpnd 17 56008880 to 56016790 7910 + protein coding gene MPN domain containing
Tssr145272 17 56009199 to 56009243 44 + TSS region transcription start site region 145272
Tssr145273 17 56009305 to 56009320 15 + TSS region transcription start site region 145273
Tssr145274 17 56009499 to 56009523 24 + TSS region transcription start site region 145274
Gm16276 17 56014283 to 56014544 261 - pseudogene predicted gene 16276
Sh3gl1 17 56016750 to 56036635 19885 - protein coding gene SH3-domain GRB2-like 1
Tssr148733 17 56017440 to 56017458 18 - TSS region transcription start site region 148733
Cpgi9335 17 56036174 to 56037166 992 CpG island CpG island 9335
Tssr148734 17 56036486 to 56036501 15 - TSS region transcription start site region 148734
Tssr148735 17 56036546 to 56036647 101 - TSS region transcription start site region 148735
Cpgi9336 17 56040078 to 56040985 907 CpG island CpG island 9336
Tssr148736 17 56040213 to 56040231 18 - TSS region transcription start site region 148736
Tssr145275 17 56040331 to 56040349 18 + TSS region transcription start site region 145275
Tssr145276 17 56040350 to 56040420 70 + TSS region transcription start site region 145276
Chaf1a 17 56040416 to 56068026 27610 + protein coding gene chromatin assembly factor 1, subunit A (p150)
Tssr145277 17 56040424 to 56040445 21 + TSS region transcription start site region 145277
Ubxn6 17 56067045 to 56075028 7983 - protein coding gene UBX domain protein 6
Cpgi9337 17 56074484 to 56075383 899 CpG island CpG island 9337
Tssr148737 17 56074542 to 56074571 29 - TSS region transcription start site region 148737
Tssr148738 17 56074598 to 56074610 12 - TSS region transcription start site region 148738
Tssr145278 17 56074724 to 56074746 22 + TSS region transcription start site region 145278
Tssr148739 17 56074932 to 56075036 104 - TSS region transcription start site region 148739
Cpgi9338 17 56079041 to 56080405 1364 CpG island CpG island 9338
Tssr5172 17 56079609 to 56079610 1 + TSS region transcription start site region 5172
Tssr145279 17 56079628 to 56079643 15 + TSS region transcription start site region 145279
Hdgfl2 17 56079634 to 56100607 20973 + protein coding gene HDGF like 2
Tssr145280 17 56079652 to 56079667 15 + TSS region transcription start site region 145280
Tssr145281 17 56079672 to 56079704 32 + TSS region transcription start site region 145281
Tssr145282 17 56081434 to 56081455 21 + TSS region transcription start site region 145282
Tssr145283 17 56081457 to 56081489 32 + TSS region transcription start site region 145283
Tssr145284 17 56082118 to 56082139 21 + TSS region transcription start site region 145284
n-TEctc4 17 56092001 to 56092072 71 - tRNA gene nuclear encoded tRNA glutamic acid 4 (anticodon CTC)
Tssr145285 17 56092505 to 56092507 2 + TSS region transcription start site region 145285
Plin4 17 56100591 to 56109803 9212 - protein coding gene perilipin 4
Tssr5173 17 56103245 to 56103263 18 - TSS region transcription start site region 5173