Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:55879628-56279643

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162 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr5171 17 55888182 to 55888183 1 + TSS region transcription start site region 5171
Cpgi9326 17 55891875 to 55892251 376 CpG island CpG island 9326
Zfp959 17 55892093 to 55898928 6835 + protein coding gene zinc finger protein 959
Gm41603 17 55905674 to 55932205 26531 - lncRNA gene predicted gene, 41603
Rpl21-ps6 17 55915403 to 55915870 467 - pseudogene ribosomal protein L21, pseudogene 6
Cpgi9327 17 55931874 to 55932468 594 CpG island CpG island 9327
Zfp119b 17 55938381 to 55949500 11119 - protein coding gene zinc finger protein 119b
Tssr145247 17 55952628 to 55952699 71 + TSS region transcription start site region 145247
Ebi3 17 55952640 to 55957022 4382 + protein coding gene Epstein-Barr virus induced gene 3
Tssr145248 17 55952716 to 55952725 9 + TSS region transcription start site region 145248
Tssr145249 17 55952728 to 55952739 11 + TSS region transcription start site region 145249
Tssr145250 17 55952744 to 55952758 14 + TSS region transcription start site region 145250
Tssr145251 17 55952779 to 55952782 3 + TSS region transcription start site region 145251
Tssr145252 17 55952791 to 55952796 5 + TSS region transcription start site region 145252
Tssr145253 17 55952798 to 55952814 16 + TSS region transcription start site region 145253
Tssr145254 17 55952821 to 55952838 17 + TSS region transcription start site region 145254
Tssr145255 17 55952851 to 55952862 11 + TSS region transcription start site region 145255
Tssr145256 17 55953894 to 55953906 12 + TSS region transcription start site region 145256
Tssr145257 17 55954318 to 55954338 20 + TSS region transcription start site region 145257
Tssr145258 17 55954340 to 55954371 31 + TSS region transcription start site region 145258
Gm16712 17 55954771 to 55959381 4610 - antisense lncRNA gene predicted gene, 16712
Cpgi9328 17 55955980 to 55956471 491 CpG island CpG island 9328
Cpgi9329 17 55958973 to 55959464 491 CpG island CpG island 9329
Tssr145259 17 55959125 to 55959140 15 + TSS region transcription start site region 145259
Tssr145260 17 55959146 to 55959182 36 + TSS region transcription start site region 145260
Yju2 17 55959187 to 55968285 9098 + protein coding gene YJU2 splicing factor
Tssr145261 17 55959765 to 55959784 19 + TSS region transcription start site region 145261
Tssr145262 17 55961597 to 55961610 13 + TSS region transcription start site region 145262
Cpgi9330 17 55969932 to 55970888 956 CpG island CpG island 9330
Tssr145263 17 55970451 to 55970485 34 + TSS region transcription start site region 145263
Shd 17 55970467 to 55976625 6158 + protein coding gene src homology 2 domain-containing transforming protein D
Tssr145264 17 55970496 to 55970577 81 + TSS region transcription start site region 145264
Tssr145265 17 55970589 to 55970603 14 + TSS region transcription start site region 145265
Tssr145266 17 55970646 to 55970660 14 + TSS region transcription start site region 145266
Cpgi9331 17 55971195 to 55971441 246 CpG island CpG island 9331
Cpgi9332 17 55986377 to 55986891 514 CpG island CpG island 9332
Tssr145267 17 55986466 to 55986491 25 + TSS region transcription start site region 145267
Tssr145268 17 55986494 to 55986531 37 + TSS region transcription start site region 145268
Fsd1 17 55986509 to 55996881 10372 + protein coding gene fibronectin type 3 and SPRY domain-containing protein
Tssr145269 17 55986538 to 55986549 11 + TSS region transcription start site region 145269
Stap2 17 55997077 to 56005584 8507 - protein coding gene signal transducing adaptor family member 2
Cpgi9333 17 55999771 to 56000726 955 CpG island CpG island 9333
Tssr148727 17 56000162 to 56000173 11 - TSS region transcription start site region 148727
Tssr148728 17 56000230 to 56000281 51 - TSS region transcription start site region 148728
Tssr148729 17 56005558 to 56005565 7 - TSS region transcription start site region 148729
Tssr148730 17 56005566 to 56005597 31 - TSS region transcription start site region 148730
Tssr145270 17 56005672 to 56005712 40 + TSS region transcription start site region 145270
Tssr148731 17 56005889 to 56005911 22 - TSS region transcription start site region 148731
Tssr148732 17 56008354 to 56008388 34 - TSS region transcription start site region 148732
Cpgi9334 17 56008380 to 56009735 1355 CpG island CpG island 9334
Tssr145271 17 56008565 to 56008590 25 + TSS region transcription start site region 145271
Mpnd 17 56008880 to 56016790 7910 + protein coding gene MPN domain containing
Tssr145272 17 56009199 to 56009243 44 + TSS region transcription start site region 145272
Tssr145273 17 56009305 to 56009320 15 + TSS region transcription start site region 145273
Tssr145274 17 56009499 to 56009523 24 + TSS region transcription start site region 145274
Gm16276 17 56014283 to 56014544 261 - pseudogene predicted gene 16276
Sh3gl1 17 56016750 to 56036635 19885 - protein coding gene SH3-domain GRB2-like 1
Tssr148733 17 56017440 to 56017458 18 - TSS region transcription start site region 148733
Cpgi9335 17 56036174 to 56037166 992 CpG island CpG island 9335
Tssr148734 17 56036486 to 56036501 15 - TSS region transcription start site region 148734
Tssr148735 17 56036546 to 56036647 101 - TSS region transcription start site region 148735
Cpgi9336 17 56040078 to 56040985 907 CpG island CpG island 9336
Tssr148736 17 56040213 to 56040231 18 - TSS region transcription start site region 148736
Tssr145275 17 56040331 to 56040349 18 + TSS region transcription start site region 145275
Tssr145276 17 56040350 to 56040420 70 + TSS region transcription start site region 145276
Chaf1a 17 56040416 to 56068026 27610 + protein coding gene chromatin assembly factor 1, subunit A (p150)
Tssr145277 17 56040424 to 56040445 21 + TSS region transcription start site region 145277
Ubxn6 17 56067045 to 56075028 7983 - protein coding gene UBX domain protein 6
Cpgi9337 17 56074484 to 56075383 899 CpG island CpG island 9337
Tssr148737 17 56074542 to 56074571 29 - TSS region transcription start site region 148737
Tssr148738 17 56074598 to 56074610 12 - TSS region transcription start site region 148738
Tssr145278 17 56074724 to 56074746 22 + TSS region transcription start site region 145278
Tssr148739 17 56074932 to 56075036 104 - TSS region transcription start site region 148739
Cpgi9338 17 56079041 to 56080405 1364 CpG island CpG island 9338
Tssr5172 17 56079609 to 56079610 1 + TSS region transcription start site region 5172
Tssr145279 17 56079628 to 56079643 15 + TSS region transcription start site region 145279
Hdgfl2 17 56079634 to 56100607 20973 + protein coding gene HDGF like 2
Tssr145280 17 56079652 to 56079667 15 + TSS region transcription start site region 145280
Tssr145281 17 56079672 to 56079704 32 + TSS region transcription start site region 145281
Tssr145282 17 56081434 to 56081455 21 + TSS region transcription start site region 145282
Tssr145283 17 56081457 to 56081489 32 + TSS region transcription start site region 145283
Tssr145284 17 56082118 to 56082139 21 + TSS region transcription start site region 145284
n-TEctc4 17 56092001 to 56092072 71 - tRNA gene nuclear encoded tRNA glutamic acid 4 (anticodon CTC)
Tssr145285 17 56092505 to 56092507 2 + TSS region transcription start site region 145285
Plin4 17 56100591 to 56109803 9212 - protein coding gene perilipin 4
Tssr5173 17 56103245 to 56103263 18 - TSS region transcription start site region 5173
Tssr148740 17 56108657 to 56108678 21 - TSS region transcription start site region 148740
Tssr148741 17 56109717 to 56109737 20 - TSS region transcription start site region 148741
Tssr148742 17 56109744 to 56109755 11 - TSS region transcription start site region 148742
Tssr148743 17 56109756 to 56109767 11 - TSS region transcription start site region 148743
Tssr148744 17 56109775 to 56109794 19 - TSS region transcription start site region 148744
Tssr148745 17 56109800 to 56109806 6 - TSS region transcription start site region 148745
Tssr148746 17 56109815 to 56109824 9 - TSS region transcription start site region 148746
Plin5 17 56111601 to 56117596 5995 - protein coding gene perilipin 5
Cpgi9339 17 56117182 to 56117727 545 CpG island CpG island 9339
Tssr148747 17 56117265 to 56117283 18 - TSS region transcription start site region 148747
Tssr148748 17 56117537 to 56117551 14 - TSS region transcription start site region 148748
Tssr148749 17 56117577 to 56117588 11 - TSS region transcription start site region 148749
Lrg1 17 56119678 to 56121946 2268 - protein coding gene leucine-rich alpha-2-glycoprotein 1
Cpgi9340 17 56119796 to 56120927 1131 CpG island CpG island 9340
Tssr148750 17 56120116 to 56120131 15 - TSS region transcription start site region 148750
Tssr5174 17 56120194 to 56120215 21 + TSS region transcription start site region 5174
Tssr148751 17 56120293 to 56120314 21 - TSS region transcription start site region 148751
Tssr148752 17 56120348 to 56120366 18 - TSS region transcription start site region 148752
Tssr148753 17 56120613 to 56120620 7 - TSS region transcription start site region 148753
Tssr148754 17 56120671 to 56120681 10 - TSS region transcription start site region 148754
Tssr148755 17 56120793 to 56120818 25 - TSS region transcription start site region 148755
Tssr148756 17 56120832 to 56120848 16 - TSS region transcription start site region 148756
Tssr148757 17 56121010 to 56121028 18 - TSS region transcription start site region 148757
Tssr148758 17 56121030 to 56121063 33 - TSS region transcription start site region 148758
Tssr148759 17 56121897 to 56121920 23 - TSS region transcription start site region 148759
Tssr5175 17 56121924 to 56121942 18 - TSS region transcription start site region 5175
Tssr148760 17 56121951 to 56121958 7 - TSS region transcription start site region 148760
Tssr148761 17 56121965 to 56121986 21 - TSS region transcription start site region 148761
Tssr148762 17 56121994 to 56122001 7 - TSS region transcription start site region 148762
Sema6b 17 56123085 to 56140343 17258 - protein coding gene sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B
Cpgi9341 17 56123431 to 56125079 1648 CpG island CpG island 9341
Cpgi9342 17 56128276 to 56128499 223 CpG island CpG island 9342
Tssr148763 17 56133759 to 56133780 21 - TSS region transcription start site region 148763
Tssr148764 17 56133785 to 56133797 12 - TSS region transcription start site region 148764
Tssr148765 17 56133817 to 56133854 37 - TSS region transcription start site region 148765
Tssr148766 17 56133887 to 56133911 24 - TSS region transcription start site region 148766
Tssr148767 17 56133932 to 56133941 9 - TSS region transcription start site region 148767
Tssr145286 17 56134268 to 56134282 14 + TSS region transcription start site region 145286
Cpgi9343 17 56134399 to 56134985 586 CpG island CpG island 9343
Cpgi9344 17 56139267 to 56141162 1895 CpG island CpG island 9344
Tssr148768 17 56140314 to 56140327 13 - TSS region transcription start site region 148768
Tssr148769 17 56140333 to 56140384 51 - TSS region transcription start site region 148769
Tssr148770 17 56140389 to 56140408 19 - TSS region transcription start site region 148770
Cpgi9345 17 56141692 to 56142584 892 CpG island CpG island 9345
Cpgi9346 17 56148748 to 56149091 343 CpG island CpG island 9346
Cpgi9347 17 56162137 to 56162664 527 CpG island CpG island 9347
Tssr145287 17 56162486 to 56162549 63 + TSS region transcription start site region 145287
Tnfaip8l1 17 56162491 to 56173955 11464 + protein coding gene tumor necrosis factor, alpha-induced protein 8-like 1
Tssr145288 17 56162552 to 56162567 15 + TSS region transcription start site region 145288
Gm44397 17 56172013 to 56172125 112 - miRNA gene predicted gene, 44397
Mydgf 17 56176541 to 56183920 7379 - protein coding gene myeloid derived growth factor
Cpgi9348 17 56183358 to 56184208 850 CpG island CpG island 9348
Tssr148771 17 56183887 to 56183938 51 - TSS region transcription start site region 148771
Dpp9 17 56186807 to 56218905 32098 - protein coding gene dipeptidylpeptidase 9
Cpgi9349 17 56217969 to 56219486 1517 CpG island CpG island 9349
Tssr148772 17 56218562 to 56218637 75 - TSS region transcription start site region 148772
Tssr148773 17 56218816 to 56218874 58 - TSS region transcription start site region 148773
Tssr148774 17 56218881 to 56218922 41 - TSS region transcription start site region 148774
Tssr145289 17 56225191 to 56225204 13 + TSS region transcription start site region 145289
Gm49879 17 56238909 to 56239361 452 + pseudogene predicted gene, 49879
Cpgi9350 17 56241714 to 56242284 570 CpG island CpG island 9350
A230051N06Rik 17 56241717 to 56242805 1088 + lincRNA gene RIKEN cDNA A230051N06 gene
Tssr145290 17 56241740 to 56241751 11 + TSS region transcription start site region 145290
Tssr145291 17 56241752 to 56241786 34 + TSS region transcription start site region 145291
Mir7b 17 56242988 to 56243098 110 + miRNA gene microRNA 7b
Cpgi9351 17 56255847 to 56256299 452 CpG island CpG island 9351
Cpgi9352 17 56256541 to 56257954 1413 CpG island CpG island 9352
Tssr145292 17 56256802 to 56256836 34 + TSS region transcription start site region 145292
Fem1a 17 56256810 to 56263610 6800 + protein coding gene feminization 1 homolog a (C. elegans)
Tssr145293 17 56265827 to 56265831 4 + TSS region transcription start site region 145293
Ticam1 17 56269462 to 56276767 7305 - protein coding gene toll-like receptor adaptor molecule 1
Tssr148775 17 56271249 to 56271263 14 - TSS region transcription start site region 148775
Tssr148776 17 56276703 to 56276714 11 - TSS region transcription start site region 148776
Tssr148777 17 56276718 to 56276749 31 - TSS region transcription start site region 148777
Tssr148778 17 56276750 to 56276773 23 - TSS region transcription start site region 148778
Plin3 17 56278962 to 56290511 11549 - protein coding gene perilipin 3