Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:53721936-55582072

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sst5 17 24857609 to 55405969 30548360 QTL susceptibility to tuberculosis 5
4932415M13Rik 17 53716509 to 53733843 17334 + lincRNA gene RIKEN cDNA 4932415M13 gene
Gm49917 17 53734511 to 53734857 346 + pseudogene predicted gene, 49917
Ckb-ps2 17 53746117 to 53747117 1000 + pseudogene creatine kinase, brain, pseudogene 2
Cpgi9319 17 53746231 to 53746617 386 CpG island CpG island 9319
Tssr145231 17 53769821 to 53769822 1 + TSS region transcription start site region 145231
Tssr145232 17 53769829 to 53769848 19 + TSS region transcription start site region 145232
Tssr145233 17 53769857 to 53769873 16 + TSS region transcription start site region 145233
Mark1-ps2 17 53774759 to 53775142 383 + pseudogene MAP/microtubule affinity-regulating kinase 1, pseudogene 2
Hcfc1r1-ps2 17 53788923 to 53789261 338 + pseudogene host cell factor C1 regulator 1 (XPO1-dependent), pseudogene 2
Sult1c2-ps2 17 53802860 to 53803479 619 + pseudogene sulfotransferase family, cytosolic, 1C, member 2, pseudogene 2
Tssr148714 17 53823793 to 53823795 2 - TSS region transcription start site region 148714
Tssr148715 17 53824108 to 53824137 29 - TSS region transcription start site region 148715
Sult1c2 17 53829637 to 53845958 16321 - protein coding gene sulfotransferase family, cytosolic, 1C, member 2
Tssr148716 17 53845808 to 53845824 16 - TSS region transcription start site region 148716
Tssr148717 17 53845934 to 53846000 66 - TSS region transcription start site region 148717
Tssr148718 17 53846071 to 53846091 20 - TSS region transcription start site region 148718
Tssr148719 17 53846245 to 53846248 3 - TSS region transcription start site region 148719
Tssr148720 17 53846345 to 53846359 14 - TSS region transcription start site region 148720
Tssr148721 17 53846374 to 53846390 16 - TSS region transcription start site region 148721
Mrps36-ps1 17 53866715 to 53867020 305 - pseudogene mitichondrial ribosomal protein S36, pseudogene 1
Sult1c2-ps1 17 53874990 to 53875550 560 - pseudogene sulfotransferase family, cytosolic, 1C, member 2, pseudogene 1
Hcfc1r1-ps1 17 53890590 to 53890935 345 - pseudogene host cell factor C1 regulator 1 (XPO1-dependent), pseudogene 1
Mark4-ps 17 53911936 to 53912319 383 - pseudogene MAP/microtubule affinity regulating kinase 4, pseudogene
Gm6949 17 53940779 to 53942171 1392 + pseudogene predicted gene 6949
Ckb-ps1 17 53940979 to 53942105 1126 - pseudogene creatine kinase, brain, pseudogene 1
Mark1-ps1 17 53948349 to 53949065 716 - pseudogene MAP/microtubule affinity regulating kinase 1, pseudogene 1
Sult1c1 17 53961615 to 53990631 29016 - protein coding gene sulfotransferase family, cytosolic, 1C, member 1
Tssr148722 17 53990629 to 53990675 46 - TSS region transcription start site region 148722
Gm5684 17 54002372 to 54003332 960 + pseudogene predicted gene 5684
Tssr145234 17 54138784 to 54138791 7 + TSS region transcription start site region 145234
Cpgi9320 17 54169371 to 54169553 182 CpG island CpG island 9320
Gm37966 17 54223513 to 54223838 325 + unclassified gene predicted gene, 37966
Slc5a7 17 54273590 to 54299034 25444 - protein coding gene solute carrier family 5 (choline transporter), member 7
Tssr148723 17 54297185 to 54297195 10 - TSS region transcription start site region 148723
Cpgi9321 17 54298305 to 54298933 628 CpG island CpG island 9321
Tssr5170 17 54298451 to 54298460 9 - TSS region transcription start site region 5170
Tssr148724 17 54298718 to 54298732 14 - TSS region transcription start site region 148724
Gm9224 17 54346540 to 54347593 1053 - pseudogene predicted gene 9224
1700025K24Rik 17 54352583 to 54370074 17491 - lincRNA gene RIKEN cDNA 1700025K24 gene
Gm49919 17 54354718 to 54355159 441 - pseudogene predicted gene, 49919
Trp53-ps 17 54419680 to 54420841 1161 + pseudogene transformation related protein 53, pseudogene
Tssr145235 17 54420718 to 54420755 37 + TSS region transcription start site region 145235
Gm4946 17 54507415 to 54508222 807 + pseudogene predicted gene 4946
D17Mit1009 17 54557272 to 54557398 126 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 1009
Gm26291 17 54651936 to 54652072 136 + snoRNA gene predicted gene, 26291
Gm32055 17 54852562 to 54860472 7910 + lincRNA gene predicted gene, 32055
Tssr145236 17 54859279 to 54859287 8 + TSS region transcription start site region 145236
Gm49920 17 55063412 to 55063999 587 + pseudogene predicted gene, 49920
Gm46577 17 55143175 to 55143546 371 + pseudogene predicted gene, 46577
D17Mit251 17 55168289 to 55168513 224 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 251
Gm4471 17 55247730 to 55248636 906 + pseudogene predicted gene 4471
Gm17377 17 55321612 to 55321817 205 + pseudogene predicted gene, 17377
Gm49921 17 55388244 to 55388707 463 - pseudogene predicted gene, 49921
D17Mit87 17 55405886 to 55405969 83 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 87
Pcyts5 17 55405886 to 55405969 83 QTL plasmacytoma susceptibility 5
Cpgi9322 17 55445227 to 55446455 1228 CpG island CpG island 9322
Tssr145237 17 55445375 to 55445388 13 + TSS region transcription start site region 145237
St6gal2 17 55445382 to 55514581 69199 + protein coding gene beta galactoside alpha 2,6 sialyltransferase 2
Tssr145238 17 55445484 to 55445499 15 + TSS region transcription start site region 145238
Tssr145239 17 55445671 to 55445701 30 + TSS region transcription start site region 145239
Tssr145240 17 55445704 to 55445730 26 + TSS region transcription start site region 145240
Tssr145241 17 55445746 to 55445755 9 + TSS region transcription start site region 145241
Tssr145242 17 55446238 to 55446257 19 + TSS region transcription start site region 145242
Cpgi9323 17 55482500 to 55482883 383 CpG island CpG island 9323
Lymph4 17 55498625 to 55498625 0 QTL lymphocyte differential 4
Lymph2 17 55498625 to 55498625 0 QTL lymphocyte differential 2
Tssr145243 17 55510262 to 55510265 3 + TSS region transcription start site region 145243
Gm26547 17 55557166 to 55563507 6341 + lincRNA gene predicted gene, 26547