Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:53695288-58905297

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847 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sst5 17 24857609 to 55405969 30548360 QTL susceptibility to tuberculosis 5
Lfnq5 17 51431951 to 57227623 5795672 QTL lung function QTL 5
Gm31532 17 53699706 to 53700472 766 + pseudogene predicted gene, 31532
Rab5a-ps 17 53702320 to 53702972 652 - pseudogene RAB5A, member RAS oncogene family, pseudogene
4932415M13Rik 17 53716509 to 53733843 17334 + lincRNA gene RIKEN cDNA 4932415M13 gene
Gm49917 17 53734511 to 53734857 346 + pseudogene predicted gene, 49917
Ckb-ps2 17 53746117 to 53747117 1000 + pseudogene creatine kinase, brain, pseudogene 2
Cpgi9319 17 53746231 to 53746617 386 CpG island CpG island 9319
Tssr145231 17 53769821 to 53769822 1 + TSS region transcription start site region 145231
Tssr145232 17 53769829 to 53769848 19 + TSS region transcription start site region 145232
Tssr145233 17 53769857 to 53769873 16 + TSS region transcription start site region 145233
Mark1-ps2 17 53774759 to 53775142 383 + pseudogene MAP/microtubule affinity-regulating kinase 1, pseudogene 2
Hcfc1r1-ps2 17 53788923 to 53789261 338 + pseudogene host cell factor C1 regulator 1 (XPO1-dependent), pseudogene 2
Sult1c2-ps2 17 53802860 to 53803479 619 + pseudogene sulfotransferase family, cytosolic, 1C, member 2, pseudogene 2
Tssr148714 17 53823793 to 53823795 2 - TSS region transcription start site region 148714
Tssr148715 17 53824108 to 53824137 29 - TSS region transcription start site region 148715
Sult1c2 17 53829637 to 53845958 16321 - protein coding gene sulfotransferase family, cytosolic, 1C, member 2
Tssr148716 17 53845808 to 53845824 16 - TSS region transcription start site region 148716
Tssr148717 17 53845934 to 53846000 66 - TSS region transcription start site region 148717
Tssr148718 17 53846071 to 53846091 20 - TSS region transcription start site region 148718
Tssr148719 17 53846245 to 53846248 3 - TSS region transcription start site region 148719
Tssr148720 17 53846345 to 53846359 14 - TSS region transcription start site region 148720
Tssr148721 17 53846374 to 53846390 16 - TSS region transcription start site region 148721
Mrps36-ps1 17 53866715 to 53867020 305 - pseudogene mitichondrial ribosomal protein S36, pseudogene 1
Sult1c2-ps1 17 53874990 to 53875550 560 - pseudogene sulfotransferase family, cytosolic, 1C, member 2, pseudogene 1
Hcfc1r1-ps1 17 53890590 to 53890935 345 - pseudogene host cell factor C1 regulator 1 (XPO1-dependent), pseudogene 1
Mark4-ps 17 53911936 to 53912319 383 - pseudogene MAP/microtubule affinity regulating kinase 4, pseudogene
Gm6949 17 53940779 to 53942171 1392 + pseudogene predicted gene 6949
Ckb-ps1 17 53940979 to 53942105 1126 - pseudogene creatine kinase, brain, pseudogene 1
Mark1-ps1 17 53948349 to 53949065 716 - pseudogene MAP/microtubule affinity regulating kinase 1, pseudogene 1
Sult1c1 17 53961615 to 53990631 29016 - protein coding gene sulfotransferase family, cytosolic, 1C, member 1
Tssr148722 17 53990629 to 53990675 46 - TSS region transcription start site region 148722
Gm5684 17 54002372 to 54003332 960 + pseudogene predicted gene 5684
Tssr145234 17 54138784 to 54138791 7 + TSS region transcription start site region 145234
Cpgi9320 17 54169371 to 54169553 182 CpG island CpG island 9320
Gm37966 17 54223513 to 54223838 325 + unclassified gene predicted gene, 37966
Slc5a7 17 54273590 to 54299034 25444 - protein coding gene solute carrier family 5 (choline transporter), member 7
Tssr148723 17 54297185 to 54297195 10 - TSS region transcription start site region 148723
Cpgi9321 17 54298305 to 54298933 628 CpG island CpG island 9321
Tssr5170 17 54298451 to 54298460 9 - TSS region transcription start site region 5170
Tssr148724 17 54298718 to 54298732 14 - TSS region transcription start site region 148724
Gm9224 17 54346540 to 54347593 1053 - pseudogene predicted gene 9224
1700025K24Rik 17 54352583 to 54370074 17491 - lincRNA gene RIKEN cDNA 1700025K24 gene
Gm49919 17 54354718 to 54355159 441 - pseudogene predicted gene, 49919
Trp53-ps 17 54419680 to 54420841 1161 + pseudogene transformation related protein 53, pseudogene
Tssr145235 17 54420718 to 54420755 37 + TSS region transcription start site region 145235
Gm4946 17 54507415 to 54508222 807 + pseudogene predicted gene 4946
D17Mit1009 17 54557272 to 54557398 126 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 1009
Gm26291 17 54651936 to 54652072 136 + snoRNA gene predicted gene, 26291
Gm32055 17 54852562 to 54860472 7910 + lincRNA gene predicted gene, 32055
Tssr145236 17 54859279 to 54859287 8 + TSS region transcription start site region 145236
Gm49920 17 55063412 to 55063999 587 + pseudogene predicted gene, 49920
Gm46577 17 55143175 to 55143546 371 + pseudogene predicted gene, 46577
D17Mit251 17 55168289 to 55168513 224 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 251
Gm4471 17 55247730 to 55248636 906 + pseudogene predicted gene 4471
Gm17377 17 55321612 to 55321817 205 + pseudogene predicted gene, 17377
Gm49921 17 55388244 to 55388707 463 - pseudogene predicted gene, 49921
Pcyts5 17 55405886 to 55405969 83 QTL plasmacytoma susceptibility 5
D17Mit87 17 55405886 to 55405969 83 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 87
Cpgi9322 17 55445227 to 55446455 1228 CpG island CpG island 9322
Tssr145237 17 55445375 to 55445388 13 + TSS region transcription start site region 145237
St6gal2 17 55445382 to 55514581 69199 + protein coding gene beta galactoside alpha 2,6 sialyltransferase 2
Tssr145238 17 55445484 to 55445499 15 + TSS region transcription start site region 145238
Tssr145239 17 55445671 to 55445701 30 + TSS region transcription start site region 145239
Tssr145240 17 55445704 to 55445730 26 + TSS region transcription start site region 145240
Tssr145241 17 55445746 to 55445755 9 + TSS region transcription start site region 145241
Tssr145242 17 55446238 to 55446257 19 + TSS region transcription start site region 145242
Cpgi9323 17 55482500 to 55482883 383 CpG island CpG island 9323
Lymph2 17 55498625 to 55498625 0 QTL lymphocyte differential 2
Lymph4 17 55498625 to 55498625 0 QTL lymphocyte differential 4
Tssr145243 17 55510262 to 55510265 3 + TSS region transcription start site region 145243
Gm26547 17 55557166 to 55563507 6341 + lincRNA gene predicted gene, 26547
Vmn2r118 17 55592329 to 55626360 34031 - protein coding gene vomeronasal 2, receptor 118
Pot1b 17 55651951 to 55712628 60677 - protein coding gene protection of telomeres 1B
Gm22654 17 55661637 to 55661741 104 + snRNA gene predicted gene, 22654
Gm18648 17 55700407 to 55701817 1410 + pseudogene predicted gene, 18648
Cpgi9324 17 55712138 to 55712760 622 CpG island CpG island 9324
Tssr148725 17 55712571 to 55712630 59 - TSS region transcription start site region 148725
Tssr148726 17 55712634 to 55712655 21 - TSS region transcription start site region 148726
Tssr145244 17 55749978 to 55749992 14 + TSS region transcription start site region 145244
Adgre4 17 55749984 to 55853662 103678 + protein coding gene adhesion G protein-coupled receptor E4
Tssr145245 17 55750017 to 55750028 11 + TSS region transcription start site region 145245
Tssr145246 17 55750029 to 55750046 17 + TSS region transcription start site region 145246
Gm18365 17 55767886 to 55768471 585 - pseudogene predicted gene, 18365
Gm18417 17 55850482 to 55851129 647 - pseudogene predicted gene, 18417
Zfp119a 17 55864892 to 55878930 14038 - protein coding gene zinc finger protein 119a
Cpgi9325 17 55878796 to 55879386 590 CpG island CpG island 9325
Tssr5171 17 55888182 to 55888183 1 + TSS region transcription start site region 5171
Cpgi9326 17 55891875 to 55892251 376 CpG island CpG island 9326
Zfp959 17 55892093 to 55898928 6835 + protein coding gene zinc finger protein 959
Gm41603 17 55905674 to 55932205 26531 - lncRNA gene predicted gene, 41603
Rpl21-ps6 17 55915403 to 55915870 467 - pseudogene ribosomal protein L21, pseudogene 6
Cpgi9327 17 55931874 to 55932468 594 CpG island CpG island 9327
Zfp119b 17 55938381 to 55949500 11119 - protein coding gene zinc finger protein 119b
Tssr145247 17 55952628 to 55952699 71 + TSS region transcription start site region 145247
Ebi3 17 55952640 to 55957022 4382 + protein coding gene Epstein-Barr virus induced gene 3
Tssr145248 17 55952716 to 55952725 9 + TSS region transcription start site region 145248
Tssr145249 17 55952728 to 55952739 11 + TSS region transcription start site region 145249
Tssr145250 17 55952744 to 55952758 14 + TSS region transcription start site region 145250
Tssr145251 17 55952779 to 55952782 3 + TSS region transcription start site region 145251
Tssr145252 17 55952791 to 55952796 5 + TSS region transcription start site region 145252
Tssr145253 17 55952798 to 55952814 16 + TSS region transcription start site region 145253
Tssr145254 17 55952821 to 55952838 17 + TSS region transcription start site region 145254
Tssr145255 17 55952851 to 55952862 11 + TSS region transcription start site region 145255
Tssr145256 17 55953894 to 55953906 12 + TSS region transcription start site region 145256
Tssr145257 17 55954318 to 55954338 20 + TSS region transcription start site region 145257
Tssr145258 17 55954340 to 55954371 31 + TSS region transcription start site region 145258
Gm16712 17 55954771 to 55959381 4610 - antisense lncRNA gene predicted gene, 16712
Cpgi9328 17 55955980 to 55956471 491 CpG island CpG island 9328
Cpgi9329 17 55958973 to 55959464 491 CpG island CpG island 9329
Tssr145259 17 55959125 to 55959140 15 + TSS region transcription start site region 145259
Tssr145260 17 55959146 to 55959182 36 + TSS region transcription start site region 145260
Yju2 17 55959187 to 55968285 9098 + protein coding gene YJU2 splicing factor
Tssr145261 17 55959765 to 55959784 19 + TSS region transcription start site region 145261
Tssr145262 17 55961597 to 55961610 13 + TSS region transcription start site region 145262
Cpgi9330 17 55969932 to 55970888 956 CpG island CpG island 9330
Tssr145263 17 55970451 to 55970485 34 + TSS region transcription start site region 145263
Shd 17 55970467 to 55976625 6158 + protein coding gene src homology 2 domain-containing transforming protein D
Tssr145264 17 55970496 to 55970577 81 + TSS region transcription start site region 145264
Tssr145265 17 55970589 to 55970603 14 + TSS region transcription start site region 145265
Tssr145266 17 55970646 to 55970660 14 + TSS region transcription start site region 145266
Cpgi9331 17 55971195 to 55971441 246 CpG island CpG island 9331
Cpgi9332 17 55986377 to 55986891 514 CpG island CpG island 9332
Tssr145267 17 55986466 to 55986491 25 + TSS region transcription start site region 145267
Tssr145268 17 55986494 to 55986531 37 + TSS region transcription start site region 145268
Fsd1 17 55986509 to 55996881 10372 + protein coding gene fibronectin type 3 and SPRY domain-containing protein
Tssr145269 17 55986538 to 55986549 11 + TSS region transcription start site region 145269
Stap2 17 55997077 to 56005584 8507 - protein coding gene signal transducing adaptor family member 2
Cpgi9333 17 55999771 to 56000726 955 CpG island CpG island 9333
Tssr148727 17 56000162 to 56000173 11 - TSS region transcription start site region 148727
Tssr148728 17 56000230 to 56000281 51 - TSS region transcription start site region 148728
Tssr148729 17 56005558 to 56005565 7 - TSS region transcription start site region 148729
Tssr148730 17 56005566 to 56005597 31 - TSS region transcription start site region 148730
Tssr145270 17 56005672 to 56005712 40 + TSS region transcription start site region 145270
Tssr148731 17 56005889 to 56005911 22 - TSS region transcription start site region 148731
Tssr148732 17 56008354 to 56008388 34 - TSS region transcription start site region 148732
Cpgi9334 17 56008380 to 56009735 1355 CpG island CpG island 9334
Tssr145271 17 56008565 to 56008590 25 + TSS region transcription start site region 145271
Mpnd 17 56008880 to 56016790 7910 + protein coding gene MPN domain containing
Tssr145272 17 56009199 to 56009243 44 + TSS region transcription start site region 145272
Tssr145273 17 56009305 to 56009320 15 + TSS region transcription start site region 145273
Tssr145274 17 56009499 to 56009523 24 + TSS region transcription start site region 145274
Gm16276 17 56014283 to 56014544 261 - pseudogene predicted gene 16276
Sh3gl1 17 56016750 to 56036635 19885 - protein coding gene SH3-domain GRB2-like 1
Tssr148733 17 56017440 to 56017458 18 - TSS region transcription start site region 148733
Cpgi9335 17 56036174 to 56037166 992 CpG island CpG island 9335
Tssr148734 17 56036486 to 56036501 15 - TSS region transcription start site region 148734
Tssr148735 17 56036546 to 56036647 101 - TSS region transcription start site region 148735
Cpgi9336 17 56040078 to 56040985 907 CpG island CpG island 9336
Tssr148736 17 56040213 to 56040231 18 - TSS region transcription start site region 148736
Tssr145275 17 56040331 to 56040349 18 + TSS region transcription start site region 145275
Tssr145276 17 56040350 to 56040420 70 + TSS region transcription start site region 145276
Chaf1a 17 56040416 to 56068026 27610 + protein coding gene chromatin assembly factor 1, subunit A (p150)
Tssr145277 17 56040424 to 56040445 21 + TSS region transcription start site region 145277
Ubxn6 17 56067045 to 56075028 7983 - protein coding gene UBX domain protein 6
Cpgi9337 17 56074484 to 56075383 899 CpG island CpG island 9337
Tssr148737 17 56074542 to 56074571 29 - TSS region transcription start site region 148737
Tssr148738 17 56074598 to 56074610 12 - TSS region transcription start site region 148738
Tssr145278 17 56074724 to 56074746 22 + TSS region transcription start site region 145278
Tssr148739 17 56074932 to 56075036 104 - TSS region transcription start site region 148739
Cpgi9338 17 56079041 to 56080405 1364 CpG island CpG island 9338
Tssr5172 17 56079609 to 56079610 1 + TSS region transcription start site region 5172
Tssr145279 17 56079628 to 56079643 15 + TSS region transcription start site region 145279
Hdgfl2 17 56079634 to 56100607 20973 + protein coding gene HDGF like 2
Tssr145280 17 56079652 to 56079667 15 + TSS region transcription start site region 145280
Tssr145281 17 56079672 to 56079704 32 + TSS region transcription start site region 145281
Tssr145282 17 56081434 to 56081455 21 + TSS region transcription start site region 145282
Tssr145283 17 56081457 to 56081489 32 + TSS region transcription start site region 145283
Tssr145284 17 56082118 to 56082139 21 + TSS region transcription start site region 145284
n-TEctc4 17 56092001 to 56092072 71 - tRNA gene nuclear encoded tRNA glutamic acid 4 (anticodon CTC)
Tssr145285 17 56092505 to 56092507 2 + TSS region transcription start site region 145285
Plin4 17 56100591 to 56109803 9212 - protein coding gene perilipin 4
Tssr5173 17 56103245 to 56103263 18 - TSS region transcription start site region 5173
Tssr148740 17 56108657 to 56108678 21 - TSS region transcription start site region 148740
Tssr148741 17 56109717 to 56109737 20 - TSS region transcription start site region 148741
Tssr148742 17 56109744 to 56109755 11 - TSS region transcription start site region 148742
Tssr148743 17 56109756 to 56109767 11 - TSS region transcription start site region 148743
Tssr148744 17 56109775 to 56109794 19 - TSS region transcription start site region 148744
Tssr148745 17 56109800 to 56109806 6 - TSS region transcription start site region 148745
Tssr148746 17 56109815 to 56109824 9 - TSS region transcription start site region 148746
Plin5 17 56111601 to 56117596 5995 - protein coding gene perilipin 5
Cpgi9339 17 56117182 to 56117727 545 CpG island CpG island 9339
Tssr148747 17 56117265 to 56117283 18 - TSS region transcription start site region 148747
Tssr148748 17 56117537 to 56117551 14 - TSS region transcription start site region 148748
Tssr148749 17 56117577 to 56117588 11 - TSS region transcription start site region 148749
Lrg1 17 56119678 to 56121946 2268 - protein coding gene leucine-rich alpha-2-glycoprotein 1
Cpgi9340 17 56119796 to 56120927 1131 CpG island CpG island 9340
Tssr148750 17 56120116 to 56120131 15 - TSS region transcription start site region 148750
Tssr5174 17 56120194 to 56120215 21 + TSS region transcription start site region 5174
Tssr148751 17 56120293 to 56120314 21 - TSS region transcription start site region 148751
Tssr148752 17 56120348 to 56120366 18 - TSS region transcription start site region 148752
Tssr148753 17 56120613 to 56120620 7 - TSS region transcription start site region 148753
Tssr148754 17 56120671 to 56120681 10 - TSS region transcription start site region 148754
Tssr148755 17 56120793 to 56120818 25 - TSS region transcription start site region 148755
Tssr148756 17 56120832 to 56120848 16 - TSS region transcription start site region 148756
Tssr148757 17 56121010 to 56121028 18 - TSS region transcription start site region 148757
Tssr148758 17 56121030 to 56121063 33 - TSS region transcription start site region 148758
Tssr148759 17 56121897 to 56121920 23 - TSS region transcription start site region 148759
Tssr5175 17 56121924 to 56121942 18 - TSS region transcription start site region 5175
Tssr148760 17 56121951 to 56121958 7 - TSS region transcription start site region 148760