Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:53401509-54048843

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Efhb 17 53398889 to 53463321 64432 - protein coding gene EF hand domain family, member B
Tssr145209 17 53421920 to 53421930 10 + TSS region transcription start site region 145209
Tssr145210 17 53421933 to 53421939 6 + TSS region transcription start site region 145210
Tssr148704 17 53463296 to 53463314 18 - TSS region transcription start site region 148704
Tssr148705 17 53463315 to 53463340 25 - TSS region transcription start site region 148705
Tpt1-ps7 17 53466649 to 53467315 666 - pseudogene tumor protein, translationally-controlled, pseudogene 7
Cpgi9315 17 53478664 to 53480105 1441 CpG island CpG island 9315
Tssr145211 17 53479212 to 53479237 25 + TSS region transcription start site region 145211
Rab5a 17 53479234 to 53507678 28444 + protein coding gene RAB5A, member RAS oncogene family
Tssr145212 17 53479242 to 53479303 61 + TSS region transcription start site region 145212
Tssr145213 17 53479337 to 53479387 50 + TSS region transcription start site region 145213
Tssr145214 17 53479429 to 53479448 19 + TSS region transcription start site region 145214
Tssr145215 17 53479459 to 53479470 11 + TSS region transcription start site region 145215
Tssr145216 17 53479473 to 53479494 21 + TSS region transcription start site region 145216
Tssr145217 17 53479502 to 53479511 9 + TSS region transcription start site region 145217
Tssr145218 17 53479527 to 53479538 11 + TSS region transcription start site region 145218
Smmq2 17 53482715 to 53482715 0 QTL soleus muscle mass QTL 2
Tssr145219 17 53491363 to 53491393 30 + TSS region transcription start site region 145219
Tssr145220 17 53492888 to 53492892 4 + TSS region transcription start site region 145220
Gm49915 17 53496081 to 53500946 4865 - antisense lncRNA gene predicted gene, 49915
Pp2d1 17 53507460 to 53539451 31991 - protein coding gene protein phosphatase 2C-like domain containing 1
D17Mit274 17 53538508 to 53538707 199 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 274
Tssr148706 17 53539385 to 53539407 22 - TSS region transcription start site region 148706
Tssr148707 17 53539411 to 53539459 48 - TSS region transcription start site region 148707
Tssr148708 17 53539466 to 53539467 1 - TSS region transcription start site region 148708
Tssr5169 17 53565899 to 53565902 3 + TSS region transcription start site region 5169
Tssr145221 17 53566736 to 53566763 27 + TSS region transcription start site region 145221
Cpgi9316 17 53566742 to 53568562 1820 CpG island CpG island 9316
Kat2b 17 53566861 to 53672720 105859 + protein coding gene K(lysine) acetyltransferase 2B
Tssr145222 17 53566976 to 53567023 47 + TSS region transcription start site region 145222
Tssr145223 17 53567259 to 53567286 27 + TSS region transcription start site region 145223
Tssr145224 17 53567288 to 53567310 22 + TSS region transcription start site region 145224
Tssr145225 17 53567314 to 53567321 7 + TSS region transcription start site region 145225
Tssr148709 17 53568318 to 53568332 14 - TSS region transcription start site region 148709
Tssr148710 17 53568336 to 53568356 20 - TSS region transcription start site region 148710
Tssr145226 17 53568438 to 53568460 22 + TSS region transcription start site region 145226
Tssr145227 17 53570237 to 53570240 3 + TSS region transcription start site region 145227
Cpgi9317 17 53578791 to 53578986 195 CpG island CpG island 9317
Tssr145228 17 53584104 to 53584118 14 + TSS region transcription start site region 145228
Tssr145229 17 53584124 to 53584141 17 + TSS region transcription start site region 145229
Gm6919 17 53598181 to 53598663 482 - pseudogene predicted gene 6919
Tssr145230 17 53628399 to 53628412 13 + TSS region transcription start site region 145230
Sgo1 17 53674786 to 53689326 14540 - protein coding gene shugoshin 1
Tssr148711 17 53682943 to 53682948 5 - TSS region transcription start site region 148711
Cpgi9318 17 53688855 to 53689915 1060 CpG island CpG island 9318
Tssr148712 17 53689231 to 53689253 22 - TSS region transcription start site region 148712
Tssr148713 17 53689266 to 53689309 43 - TSS region transcription start site region 148713
Gm31532 17 53699706 to 53700472 766 + pseudogene predicted gene, 31532
Rab5a-ps 17 53702320 to 53702972 652 - pseudogene RAB5A, member RAS oncogene family, pseudogene
4932415M13Rik 17 53716509 to 53733843 17334 + lincRNA gene RIKEN cDNA 4932415M13 gene
Gm49917 17 53734511 to 53734857 346 + pseudogene predicted gene, 49917
Ckb-ps2 17 53746117 to 53747117 1000 + pseudogene creatine kinase, brain, pseudogene 2
Cpgi9319 17 53746231 to 53746617 386 CpG island CpG island 9319
Tssr145231 17 53769821 to 53769822 1 + TSS region transcription start site region 145231
Tssr145232 17 53769829 to 53769848 19 + TSS region transcription start site region 145232
Tssr145233 17 53769857 to 53769873 16 + TSS region transcription start site region 145233
Mark1-ps2 17 53774759 to 53775142 383 + pseudogene MAP/microtubule affinity-regulating kinase 1, pseudogene 2
Hcfc1r1-ps2 17 53788923 to 53789261 338 + pseudogene host cell factor C1 regulator 1 (XPO1-dependent), pseudogene 2
Sult1c2-ps2 17 53802860 to 53803479 619 + pseudogene sulfotransferase family, cytosolic, 1C, member 2, pseudogene 2
Tssr148714 17 53823793 to 53823795 2 - TSS region transcription start site region 148714
Tssr148715 17 53824108 to 53824137 29 - TSS region transcription start site region 148715
Sult1c2 17 53829637 to 53845958 16321 - protein coding gene sulfotransferase family, cytosolic, 1C, member 2
Tssr148716 17 53845808 to 53845824 16 - TSS region transcription start site region 148716
Tssr148717 17 53845934 to 53846000 66 - TSS region transcription start site region 148717
Tssr148718 17 53846071 to 53846091 20 - TSS region transcription start site region 148718
Tssr148719 17 53846245 to 53846248 3 - TSS region transcription start site region 148719
Tssr148720 17 53846345 to 53846359 14 - TSS region transcription start site region 148720
Tssr148721 17 53846374 to 53846390 16 - TSS region transcription start site region 148721
Mrps36-ps1 17 53866715 to 53867020 305 - pseudogene mitichondrial ribosomal protein S36, pseudogene 1
Sult1c2-ps1 17 53874990 to 53875550 560 - pseudogene sulfotransferase family, cytosolic, 1C, member 2, pseudogene 1
Hcfc1r1-ps1 17 53890590 to 53890935 345 - pseudogene host cell factor C1 regulator 1 (XPO1-dependent), pseudogene 1
Mark4-ps 17 53911936 to 53912319 383 - pseudogene MAP/microtubule affinity regulating kinase 4, pseudogene
Gm6949 17 53940779 to 53942171 1392 + pseudogene predicted gene 6949
Ckb-ps1 17 53940979 to 53942105 1126 - pseudogene creatine kinase, brain, pseudogene 1
Mark1-ps1 17 53948349 to 53949065 716 - pseudogene MAP/microtubule affinity regulating kinase 1, pseudogene 1
Sult1c1 17 53961615 to 53990631 29016 - protein coding gene sulfotransferase family, cytosolic, 1C, member 1
Tssr148722 17 53990629 to 53990675 46 - TSS region transcription start site region 148722
Gm5684 17 54002372 to 54003332 960 + pseudogene predicted gene 5684