Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:53009242-53949303

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D17Mit86 17 53021695 to 53021844 149 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 86
Tssr5167 17 53022780 to 53022781 1 - TSS region transcription start site region 5167
Tssr5168 17 53145589 to 53145592 3 + TSS region transcription start site region 5168
Gm9210 17 53196451 to 53198567 2116 + pseudogene predicted gene 9210
Gm49913 17 53245963 to 53246341 378 + pseudogene predicted gene, 49913
Gm19598 17 53251289 to 53251478 189 + pseudogene predicted gene, 19598
Gm41601 17 53256122 to 53262768 6646 - lncRNA gene predicted gene, 41601
Gm49914 17 53303988 to 53304407 419 - pseudogene predicted gene, 49914
Tssr145208 17 53354466 to 53354472 6 + TSS region transcription start site region 145208
Gm29770 17 53354512 to 53354821 309 + pseudogene predicted gene, 29770
Gm9214 17 53359927 to 53361889 1962 + pseudogene predicted gene 9214
Efhb 17 53398889 to 53463321 64432 - protein coding gene EF hand domain family, member B
Tssr145209 17 53421920 to 53421930 10 + TSS region transcription start site region 145209
Tssr145210 17 53421933 to 53421939 6 + TSS region transcription start site region 145210
Tssr148704 17 53463296 to 53463314 18 - TSS region transcription start site region 148704
Tssr148705 17 53463315 to 53463340 25 - TSS region transcription start site region 148705
Tpt1-ps7 17 53466649 to 53467315 666 - pseudogene tumor protein, translationally-controlled, pseudogene 7
Cpgi9315 17 53478664 to 53480105 1441 CpG island CpG island 9315
Tssr145211 17 53479212 to 53479237 25 + TSS region transcription start site region 145211
Rab5a 17 53479234 to 53507678 28444 + protein coding gene RAB5A, member RAS oncogene family
Tssr145212 17 53479242 to 53479303 61 + TSS region transcription start site region 145212
Tssr145213 17 53479337 to 53479387 50 + TSS region transcription start site region 145213
Tssr145214 17 53479429 to 53479448 19 + TSS region transcription start site region 145214
Tssr145215 17 53479459 to 53479470 11 + TSS region transcription start site region 145215
Tssr145216 17 53479473 to 53479494 21 + TSS region transcription start site region 145216
Tssr145217 17 53479502 to 53479511 9 + TSS region transcription start site region 145217
Tssr145218 17 53479527 to 53479538 11 + TSS region transcription start site region 145218
Smmq2 17 53482715 to 53482715 0 QTL soleus muscle mass QTL 2
Tssr145219 17 53491363 to 53491393 30 + TSS region transcription start site region 145219
Tssr145220 17 53492888 to 53492892 4 + TSS region transcription start site region 145220
Gm49915 17 53496081 to 53500946 4865 - antisense lncRNA gene predicted gene, 49915
Pp2d1 17 53507460 to 53539451 31991 - protein coding gene protein phosphatase 2C-like domain containing 1
D17Mit274 17 53538508 to 53538707 199 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 274
Tssr148706 17 53539385 to 53539407 22 - TSS region transcription start site region 148706
Tssr148707 17 53539411 to 53539459 48 - TSS region transcription start site region 148707
Tssr148708 17 53539466 to 53539467 1 - TSS region transcription start site region 148708
Tssr5169 17 53565899 to 53565902 3 + TSS region transcription start site region 5169
Tssr145221 17 53566736 to 53566763 27 + TSS region transcription start site region 145221
Cpgi9316 17 53566742 to 53568562 1820 CpG island CpG island 9316
Kat2b 17 53566861 to 53672720 105859 + protein coding gene K(lysine) acetyltransferase 2B
Tssr145222 17 53566976 to 53567023 47 + TSS region transcription start site region 145222
Tssr145223 17 53567259 to 53567286 27 + TSS region transcription start site region 145223
Tssr145224 17 53567288 to 53567310 22 + TSS region transcription start site region 145224
Tssr145225 17 53567314 to 53567321 7 + TSS region transcription start site region 145225
Tssr148709 17 53568318 to 53568332 14 - TSS region transcription start site region 148709
Tssr148710 17 53568336 to 53568356 20 - TSS region transcription start site region 148710
Tssr145226 17 53568438 to 53568460 22 + TSS region transcription start site region 145226
Tssr145227 17 53570237 to 53570240 3 + TSS region transcription start site region 145227
Cpgi9317 17 53578791 to 53578986 195 CpG island CpG island 9317
Tssr145228 17 53584104 to 53584118 14 + TSS region transcription start site region 145228
Tssr145229 17 53584124 to 53584141 17 + TSS region transcription start site region 145229
Gm6919 17 53598181 to 53598663 482 - pseudogene predicted gene 6919
Tssr145230 17 53628399 to 53628412 13 + TSS region transcription start site region 145230
Sgo1 17 53674786 to 53689326 14540 - protein coding gene shugoshin 1
Tssr148711 17 53682943 to 53682948 5 - TSS region transcription start site region 148711
Cpgi9318 17 53688855 to 53689915 1060 CpG island CpG island 9318
Tssr148712 17 53689231 to 53689253 22 - TSS region transcription start site region 148712
Tssr148713 17 53689266 to 53689309 43 - TSS region transcription start site region 148713
Gm31532 17 53699706 to 53700472 766 + pseudogene predicted gene, 31532
Rab5a-ps 17 53702320 to 53702972 652 - pseudogene RAB5A, member RAS oncogene family, pseudogene
4932415M13Rik 17 53716509 to 53733843 17334 + lincRNA gene RIKEN cDNA 4932415M13 gene
Gm49917 17 53734511 to 53734857 346 + pseudogene predicted gene, 49917
Ckb-ps2 17 53746117 to 53747117 1000 + pseudogene creatine kinase, brain, pseudogene 2
Cpgi9319 17 53746231 to 53746617 386 CpG island CpG island 9319
Tssr145231 17 53769821 to 53769822 1 + TSS region transcription start site region 145231
Tssr145232 17 53769829 to 53769848 19 + TSS region transcription start site region 145232
Tssr145233 17 53769857 to 53769873 16 + TSS region transcription start site region 145233
Mark1-ps2 17 53774759 to 53775142 383 + pseudogene MAP/microtubule affinity-regulating kinase 1, pseudogene 2
Hcfc1r1-ps2 17 53788923 to 53789261 338 + pseudogene host cell factor C1 regulator 1 (XPO1-dependent), pseudogene 2
Sult1c2-ps2 17 53802860 to 53803479 619 + pseudogene sulfotransferase family, cytosolic, 1C, member 2, pseudogene 2
Tssr148714 17 53823793 to 53823795 2 - TSS region transcription start site region 148714
Tssr148715 17 53824108 to 53824137 29 - TSS region transcription start site region 148715
Sult1c2 17 53829637 to 53845958 16321 - protein coding gene sulfotransferase family, cytosolic, 1C, member 2
Tssr148716 17 53845808 to 53845824 16 - TSS region transcription start site region 148716
Tssr148717 17 53845934 to 53846000 66 - TSS region transcription start site region 148717
Tssr148718 17 53846071 to 53846091 20 - TSS region transcription start site region 148718
Tssr148719 17 53846245 to 53846248 3 - TSS region transcription start site region 148719
Tssr148720 17 53846345 to 53846359 14 - TSS region transcription start site region 148720
Tssr148721 17 53846374 to 53846390 16 - TSS region transcription start site region 148721
Mrps36-ps1 17 53866715 to 53867020 305 - pseudogene mitichondrial ribosomal protein S36, pseudogene 1
Sult1c2-ps1 17 53874990 to 53875550 560 - pseudogene sulfotransferase family, cytosolic, 1C, member 2, pseudogene 1
Hcfc1r1-ps1 17 53890590 to 53890935 345 - pseudogene host cell factor C1 regulator 1 (XPO1-dependent), pseudogene 1
Mark4-ps 17 53911936 to 53912319 383 - pseudogene MAP/microtubule affinity regulating kinase 4, pseudogene
Gm6949 17 53940779 to 53942171 1392 + pseudogene predicted gene 6949
Ckb-ps1 17 53940979 to 53942105 1126 - pseudogene creatine kinase, brain, pseudogene 1
Mark1-ps1 17 53948349 to 53949065 716 - pseudogene MAP/microtubule affinity regulating kinase 1, pseudogene 1