Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:5209951-5939964

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arid1b 17 4994332 to 5347656 353324 + protein coding gene AT rich interactive domain 1B (SWI-like)
Gm34854 17 5196277 to 5217166 20889 - lncRNA gene predicted gene, 34854
Tssr146298 17 5217279 to 5217309 30 - TSS region transcription start site region 146298
Tssr142399 17 5227897 to 5227898 1 + TSS region transcription start site region 142399
Tssr142400 17 5242990 to 5242999 9 + TSS region transcription start site region 142400
Tssr142401 17 5278453 to 5278464 11 + TSS region transcription start site region 142401
Tssr142402 17 5278502 to 5278507 5 + TSS region transcription start site region 142402
Tssr142403 17 5324960 to 5324965 5 + TSS region transcription start site region 142403
Tssr142404 17 5332544 to 5332582 38 + TSS region transcription start site region 142404
Tssr142405 17 5334822 to 5334831 9 + TSS region transcription start site region 142405
Tssr142406 17 5334837 to 5334850 13 + TSS region transcription start site region 142406
Tssr142407 17 5336670 to 5336684 14 + TSS region transcription start site region 142407
Cpgi8556 17 5341860 to 5342748 888 CpG island CpG island 8556
Tssr142408 17 5343972 to 5343978 6 + TSS region transcription start site region 142408
Cpgi8557 17 5397324 to 5397987 663 CpG island CpG island 8557
Tssr142409 17 5401007 to 5401018 11 + TSS region transcription start site region 142409
D17Jcs98 17 5403550 to 5403768 218 DNA segment DNA segment, Chr 17, John C. Schimenti 98
Tssr142410 17 5404075 to 5404082 7 + TSS region transcription start site region 142410
Tssr146299 17 5406632 to 5406664 32 - TSS region transcription start site region 146299
Tmem242 17 5410870 to 5440259 29389 - protein coding gene transmembrane protein 242
Gm29050 17 5412064 to 5413483 1419 + antisense lncRNA gene predicted gene 29050
Ldhal6b 17 5417323 to 5418767 1444 - protein coding gene lactate dehydrogenase A-like 6B
Cpgi8558 17 5418294 to 5418803 509 CpG island CpG island 8558
Tssr146300 17 5418664 to 5418742 78 - TSS region transcription start site region 146300
Gm22475 17 5421464 to 5421565 101 + miRNA gene predicted gene, 22475
Tssr146301 17 5440229 to 5440263 34 - TSS region transcription start site region 146301
Gm8363 17 5481123 to 5482964 1841 - pseudogene predicted gene 8363
Cpgi8559 17 5491605 to 5493723 2118 CpG island CpG island 8559
Tssr146302 17 5492456 to 5492479 23 - TSS region transcription start site region 146302
Tssr146303 17 5492497 to 5492517 20 - TSS region transcription start site region 146303
Zdhhc14 17 5492557 to 5753811 261254 + protein coding gene zinc finger, DHHC domain containing 14
Tssr142411 17 5492558 to 5492646 88 + TSS region transcription start site region 142411
Tssr142412 17 5492914 to 5492954 40 + TSS region transcription start site region 142412
Tssr142413 17 5492982 to 5492989 7 + TSS region transcription start site region 142413
Tssr142414 17 5493155 to 5493196 41 + TSS region transcription start site region 142414
Tssr146304 17 5493975 to 5493997 22 - TSS region transcription start site region 146304
Tssr142415 17 5497457 to 5497465 8 + TSS region transcription start site region 142415
Tssr142416 17 5522035 to 5522058 23 + TSS region transcription start site region 142416
Tssr142417 17 5538504 to 5538510 6 + TSS region transcription start site region 142417
Tssr142418 17 5540109 to 5540124 15 + TSS region transcription start site region 142418
Tssr142419 17 5547888 to 5547901 13 + TSS region transcription start site region 142419
Tssr146305 17 5573189 to 5573193 4 - TSS region transcription start site region 146305
Tssr142420 17 5574914 to 5574941 27 + TSS region transcription start site region 142420
Tssr142421 17 5574951 to 5574964 13 + TSS region transcription start site region 142421
Tssr142422 17 5575004 to 5575032 28 + TSS region transcription start site region 142422
Tssr142423 17 5581012 to 5581016 4 + TSS region transcription start site region 142423
D17Tu1 17 5581076 to 5581317 241 DNA segment DNA segment, Chr 17, Tubingen 1
Tssr146306 17 5591643 to 5591675 32 - TSS region transcription start site region 146306
Tssr142424 17 5661700 to 5661712 12 + TSS region transcription start site region 142424
Tssr142425 17 5685677 to 5685689 12 + TSS region transcription start site region 142425
Tssr142426 17 5688088 to 5688132 44 + TSS region transcription start site region 142426
Tssr142427 17 5700082 to 5700121 39 + TSS region transcription start site region 142427
Tssr142428 17 5700166 to 5700204 38 + TSS region transcription start site region 142428
Tssr142429 17 5713139 to 5713143 4 + TSS region transcription start site region 142429
Tssr142430 17 5718011 to 5718028 17 + TSS region transcription start site region 142430
Tssr142431 17 5720856 to 5720879 23 + TSS region transcription start site region 142431
Tssr142432 17 5726535 to 5726538 3 + TSS region transcription start site region 142432
4930597E08Rik 17 5743397 to 5744207 810 unclassified gene RIKEN cDNA 4930597E08 gene
Gm41519 17 5760321 to 5770730 10409 - lncRNA gene predicted gene, 41519
3300005D01Rik 17 5798657 to 5803240 4583 + lincRNA gene RIKEN cDNA 3300005D01 gene
Tssr4985 17 5799487 to 5799499 12 + TSS region transcription start site region 4985
Tssr142433 17 5799597 to 5799614 17 + TSS region transcription start site region 142433
Tssr142434 17 5799616 to 5799649 33 + TSS region transcription start site region 142434
Tssr142435 17 5799660 to 5799678 18 + TSS region transcription start site region 142435
Tssr146307 17 5803335 to 5803362 27 - TSS region transcription start site region 146307
Tssr142436 17 5803910 to 5803923 13 + TSS region transcription start site region 142436
Tssr142437 17 5804621 to 5804633 12 + TSS region transcription start site region 142437
Tssr142438 17 5804655 to 5804661 6 + TSS region transcription start site region 142438
Gm10231 17 5816200 to 5816640 440 - pseudogene predicted pseudogene 10231
Tssr146308 17 5816699 to 5816701 2 - TSS region transcription start site region 146308
Gm26595 17 5817472 to 5817955 483 + pseudogene predicted gene, 26595
Gm26622 17 5837968 to 5838265 297 + pseudogene predicted gene, 26622
Cpgi8560 17 5840833 to 5841144 311 CpG island CpG island 8560
Tssr142439 17 5841252 to 5841271 19 + TSS region transcription start site region 142439
Tssr142440 17 5841307 to 5841377 70 + TSS region transcription start site region 142440
Snx9 17 5841380 to 5931956 90576 + protein coding gene sorting nexin 9
Tssr142441 17 5841394 to 5841410 16 + TSS region transcription start site region 142441
Tssr142442 17 5841424 to 5841463 39 + TSS region transcription start site region 142442
Cpgi8561 17 5841552 to 5841967 415 CpG island CpG island 8561
Gm35474 17 5845712 to 5848354 2642 - lncRNA gene predicted gene, 35474
Cpgi8562 17 5849585 to 5849767 182 CpG island CpG island 8562
Tssr142443 17 5850786 to 5850800 14 + TSS region transcription start site region 142443
E130303B20Rik 17 5851040 to 5851953 913 unclassified gene RIKEN cDNA E130303B20 gene
Cpgi8563 17 5887004 to 5887161 157 CpG island CpG island 8563
Tssr142444 17 5898101 to 5898105 4 + TSS region transcription start site region 142444
Tssr142445 17 5926927 to 5926963 36 + TSS region transcription start site region 142445
Gm46599 17 5928306 to 5929351 1045 + lncRNA gene predicted gene, 46599
Cpgi8564 17 5934778 to 5935199 421 CpG island CpG island 8564
D17Mit196 17 5936872 to 5936967 95 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 196
Gm8376 17 5939085 to 5939646 561 + pseudogene predicted gene 8376