Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:52062709-53519194

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kcal2 17 26182038 to 52604676 26422638 QTL kilocalorie 2
Obrq14 17 48706312 to 52659396 3953084 QTL obesity resistance QTL 14
Gm19585 17 52149244 to 52162930 13686 + lincRNA gene predicted gene, 19585
Tssr145178 17 52149285 to 52149295 10 + TSS region transcription start site region 145178
Tssr145179 17 52149305 to 52149339 34 + TSS region transcription start site region 145179
Tssr148694 17 52162631 to 52162640 9 - TSS region transcription start site region 148694
Tssr148695 17 52162650 to 52162678 28 - TSS region transcription start site region 148695
Tssr145180 17 52163132 to 52163139 7 + TSS region transcription start site region 145180
Tssr145181 17 52163221 to 52163232 11 + TSS region transcription start site region 145181
Tssr148696 17 52213022 to 52213036 14 - TSS region transcription start site region 148696
Tssr145182 17 52213156 to 52213170 14 + TSS region transcription start site region 145182
Tssr145183 17 52217656 to 52217667 11 + TSS region transcription start site region 145183
Tssr145184 17 52217681 to 52217694 13 + TSS region transcription start site region 145184
D17Mit237 17 52218243 to 52218350 107 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 237
Tssr145185 17 52280145 to 52280152 7 + TSS region transcription start site region 145185
Tssr145186 17 52282542 to 52282552 10 + TSS region transcription start site region 145186
Tssr145187 17 52282632 to 52282645 13 + TSS region transcription start site region 145187
Tssr148697 17 52285501 to 52285508 7 - TSS region transcription start site region 148697
Tssr145188 17 52304066 to 52304068 2 + TSS region transcription start site region 145188
Gm41600 17 52304434 to 52326312 21878 + lincRNA gene predicted gene, 41600
Tssr145189 17 52304472 to 52304498 26 + TSS region transcription start site region 145189
Tssr145190 17 52304499 to 52304515 16 + TSS region transcription start site region 145190
Tssr145191 17 52304522 to 52304537 15 + TSS region transcription start site region 145191
Tssr145192 17 52304540 to 52304549 9 + TSS region transcription start site region 145192
Tssr148698 17 52306621 to 52306623 2 - TSS region transcription start site region 148698
Tssr145193 17 52307574 to 52307622 48 + TSS region transcription start site region 145193
Tssr145194 17 52307706 to 52307717 11 + TSS region transcription start site region 145194
Tssr145195 17 52309899 to 52309904 5 + TSS region transcription start site region 145195
Tssr148699 17 52312165 to 52312181 16 - TSS region transcription start site region 148699
Gm49912 17 52312191 to 52350056 37865 - lincRNA gene predicted gene, 49912
Tssr148700 17 52312204 to 52312220 16 - TSS region transcription start site region 148700
Tssr148701 17 52348642 to 52348658 16 - TSS region transcription start site region 148701
Tssr145196 17 52348716 to 52348731 15 + TSS region transcription start site region 145196
Tssr148702 17 52350013 to 52350022 9 - TSS region transcription start site region 148702
Tssr5164 17 52350042 to 52350047 5 - TSS region transcription start site region 5164
Tssr148703 17 52350050 to 52350061 11 - TSS region transcription start site region 148703
Tssr145197 17 52351510 to 52351543 33 + TSS region transcription start site region 145197
Gm5094 17 52452575 to 52461765 9190 - lincRNA gene predicted gene 5094
Tssr145198 17 52457174 to 52457177 3 + TSS region transcription start site region 145198
Tssr145199 17 52458680 to 52458691 11 + TSS region transcription start site region 145199
Tssr145200 17 52468773 to 52468793 20 + TSS region transcription start site region 145200
Tssr145201 17 52468796 to 52468809 13 + TSS region transcription start site region 145201
Gm27217 17 52593393 to 52602660 9267 - antisense lncRNA gene predicted gene 27217
Cpgi9313 17 52601039 to 52601476 437 CpG island CpG island 9313
Cpgi9314 17 52602183 to 52602969 786 CpG island CpG island 9314
Tssr145202 17 52602242 to 52602284 42 + TSS region transcription start site region 145202
Tssr145203 17 52602285 to 52602295 10 + TSS region transcription start site region 145203
Tssr145204 17 52602397 to 52602437 40 + TSS region transcription start site region 145204
Tssr145205 17 52602700 to 52602717 17 + TSS region transcription start site region 145205
Kcnh8 17 52602709 to 52979194 376485 + protein coding gene potassium voltage-gated channel, subfamily H (eag-related), member 8
Tssr5165 17 52602722 to 52602760 38 + TSS region transcription start site region 5165
D17Mit6 17 52604576 to 52604676 100 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 6
Tssr145206 17 52625036 to 52625040 4 + TSS region transcription start site region 145206
Amzn2 17 52659266 to 52659396 130 QTL anatomical modifier of Zfp423 2
D17Mit139 17 52659266 to 52659396 130 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 139
D17Dcr14 17 52659298 to 52659399 101 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 14
D17Mit70 17 52690804 to 52690957 153 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 70
Tssr5166 17 52719864 to 52719868 4 + TSS region transcription start site region 5166
Tssr145207 17 52757091 to 52757093 2 + TSS region transcription start site region 145207
D17Mit86 17 53021695 to 53021844 149 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 86
Tssr5167 17 53022780 to 53022781 1 - TSS region transcription start site region 5167
Tssr5168 17 53145589 to 53145592 3 + TSS region transcription start site region 5168
Gm9210 17 53196451 to 53198567 2116 + pseudogene predicted gene 9210
Gm49913 17 53245963 to 53246341 378 + pseudogene predicted gene, 49913
Gm19598 17 53251289 to 53251478 189 + pseudogene predicted gene, 19598
Gm41601 17 53256122 to 53262768 6646 - lncRNA gene predicted gene, 41601
Gm49914 17 53303988 to 53304407 419 - pseudogene predicted gene, 49914
Tssr145208 17 53354466 to 53354472 6 + TSS region transcription start site region 145208
Gm29770 17 53354512 to 53354821 309 + pseudogene predicted gene, 29770
Gm9214 17 53359927 to 53361889 1962 + pseudogene predicted gene 9214
Efhb 17 53398889 to 53463321 64432 - protein coding gene EF hand domain family, member B
Tssr145209 17 53421920 to 53421930 10 + TSS region transcription start site region 145209
Tssr145210 17 53421933 to 53421939 6 + TSS region transcription start site region 145210
Tssr148704 17 53463296 to 53463314 18 - TSS region transcription start site region 148704
Tssr148705 17 53463315 to 53463340 25 - TSS region transcription start site region 148705
Tpt1-ps7 17 53466649 to 53467315 666 - pseudogene tumor protein, translationally-controlled, pseudogene 7
Cpgi9315 17 53478664 to 53480105 1441 CpG island CpG island 9315
Tssr145211 17 53479212 to 53479237 25 + TSS region transcription start site region 145211
Rab5a 17 53479234 to 53507678 28444 + protein coding gene RAB5A, member RAS oncogene family
Tssr145212 17 53479242 to 53479303 61 + TSS region transcription start site region 145212
Tssr145213 17 53479337 to 53479387 50 + TSS region transcription start site region 145213
Tssr145214 17 53479429 to 53479448 19 + TSS region transcription start site region 145214
Tssr145215 17 53479459 to 53479470 11 + TSS region transcription start site region 145215
Tssr145216 17 53479473 to 53479494 21 + TSS region transcription start site region 145216
Tssr145217 17 53479502 to 53479511 9 + TSS region transcription start site region 145217
Tssr145218 17 53479527 to 53479538 11 + TSS region transcription start site region 145218
Smmq2 17 53482715 to 53482715 0 QTL soleus muscle mass QTL 2
Tssr145219 17 53491363 to 53491393 30 + TSS region transcription start site region 145219
Tssr145220 17 53492888 to 53492892 4 + TSS region transcription start site region 145220
Gm49915 17 53496081 to 53500946 4865 - antisense lncRNA gene predicted gene, 49915
Pp2d1 17 53507460 to 53539451 31991 - protein coding gene protein phosphatase 2C-like domain containing 1