Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:51832656-52602667

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Satb1 17 51736187 to 51833290 97103 - protein coding gene special AT-rich sequence binding protein 1
Cpgi9312 17 51831455 to 51833631 2176 CpG island CpG island 9312
Tssr148682 17 51832666 to 51832678 12 - TSS region transcription start site region 148682
Tssr148683 17 51832692 to 51832697 5 - TSS region transcription start site region 148683
Tssr145166 17 51832757 to 51832777 20 + TSS region transcription start site region 145166
Tssr145167 17 51832778 to 51832800 22 + TSS region transcription start site region 145167
Tssr145168 17 51832815 to 51832825 10 + TSS region transcription start site region 145168
Gm6934 17 51832819 to 51834723 1904 + protein coding gene predicted gene 6934
Tssr145169 17 51833007 to 51833017 10 + TSS region transcription start site region 145169
Tssr145170 17 51833020 to 51833037 17 + TSS region transcription start site region 145170
Tssr148684 17 51833075 to 51833103 28 - TSS region transcription start site region 148684
Tssr148685 17 51833113 to 51833138 25 - TSS region transcription start site region 148685
Tssr148686 17 51833205 to 51833246 41 - TSS region transcription start site region 148686
Tssr145171 17 51833242 to 51833261 19 + TSS region transcription start site region 145171
Tssr148687 17 51833250 to 51833270 20 - TSS region transcription start site region 148687
Tssr148688 17 51833278 to 51833299 21 - TSS region transcription start site region 148688
Tssr145172 17 51834462 to 51834471 9 + TSS region transcription start site region 145172
Gm16489 17 51841229 to 51852524 11295 protein coding gene predicted gene 16489
Gm37593 17 51842861 to 51846114 3253 + unclassified gene predicted gene, 37593
Gm37266 17 51850239 to 51852525 2286 + unclassified gene predicted gene, 37266
Tssr145173 17 51853154 to 51853161 7 + TSS region transcription start site region 145173
Gm37176 17 51859167 to 51863217 4050 + unclassified gene predicted gene, 37176
Tssr145174 17 51859596 to 51859597 1 + TSS region transcription start site region 145174
Tssr145175 17 51879882 to 51879906 24 + TSS region transcription start site region 145175
Tssr145176 17 51882691 to 51882706 15 + TSS region transcription start site region 145176
Gm20098 17 51882727 to 51965257 82530 + lincRNA gene predicted gene, 20098
Tssr148689 17 51899583 to 51899627 44 - TSS region transcription start site region 148689
Tssr148690 17 51903920 to 51903930 10 - TSS region transcription start site region 148690
Tssr148691 17 51903950 to 51903961 11 - TSS region transcription start site region 148691
Tssr145177 17 51904205 to 51904222 17 + TSS region transcription start site region 145177
Tssr148692 17 51945720 to 51945729 9 - TSS region transcription start site region 148692
Tssr148693 17 51956547 to 51956566 19 - TSS region transcription start site region 148693
Gm19197 17 52008967 to 52009569 602 + pseudogene predicted gene, 19197
Gm19585 17 52149244 to 52162930 13686 + lincRNA gene predicted gene, 19585
Tssr145178 17 52149285 to 52149295 10 + TSS region transcription start site region 145178
Tssr145179 17 52149305 to 52149339 34 + TSS region transcription start site region 145179
Tssr148694 17 52162631 to 52162640 9 - TSS region transcription start site region 148694
Tssr148695 17 52162650 to 52162678 28 - TSS region transcription start site region 148695
Tssr145180 17 52163132 to 52163139 7 + TSS region transcription start site region 145180
Tssr145181 17 52163221 to 52163232 11 + TSS region transcription start site region 145181
Tssr148696 17 52213022 to 52213036 14 - TSS region transcription start site region 148696
Tssr145182 17 52213156 to 52213170 14 + TSS region transcription start site region 145182
Tssr145183 17 52217656 to 52217667 11 + TSS region transcription start site region 145183
Tssr145184 17 52217681 to 52217694 13 + TSS region transcription start site region 145184
D17Mit237 17 52218243 to 52218350 107 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 237
Tssr145185 17 52280145 to 52280152 7 + TSS region transcription start site region 145185
Tssr145186 17 52282542 to 52282552 10 + TSS region transcription start site region 145186
Tssr145187 17 52282632 to 52282645 13 + TSS region transcription start site region 145187
Tssr148697 17 52285501 to 52285508 7 - TSS region transcription start site region 148697
Tssr145188 17 52304066 to 52304068 2 + TSS region transcription start site region 145188
Gm41600 17 52304434 to 52326312 21878 + lincRNA gene predicted gene, 41600
Tssr145189 17 52304472 to 52304498 26 + TSS region transcription start site region 145189
Tssr145190 17 52304499 to 52304515 16 + TSS region transcription start site region 145190
Tssr145191 17 52304522 to 52304537 15 + TSS region transcription start site region 145191
Tssr145192 17 52304540 to 52304549 9 + TSS region transcription start site region 145192
Tssr148698 17 52306621 to 52306623 2 - TSS region transcription start site region 148698
Tssr145193 17 52307574 to 52307622 48 + TSS region transcription start site region 145193
Tssr145194 17 52307706 to 52307717 11 + TSS region transcription start site region 145194
Tssr145195 17 52309899 to 52309904 5 + TSS region transcription start site region 145195
Tssr148699 17 52312165 to 52312181 16 - TSS region transcription start site region 148699
Gm49912 17 52312191 to 52350056 37865 - lincRNA gene predicted gene, 49912
Tssr148700 17 52312204 to 52312220 16 - TSS region transcription start site region 148700
Tssr148701 17 52348642 to 52348658 16 - TSS region transcription start site region 148701
Tssr145196 17 52348716 to 52348731 15 + TSS region transcription start site region 145196
Tssr148702 17 52350013 to 52350022 9 - TSS region transcription start site region 148702
Tssr5164 17 52350042 to 52350047 5 - TSS region transcription start site region 5164
Tssr148703 17 52350050 to 52350061 11 - TSS region transcription start site region 148703
Tssr145197 17 52351510 to 52351543 33 + TSS region transcription start site region 145197
Gm5094 17 52452575 to 52461765 9190 - lincRNA gene predicted gene 5094
Tssr145198 17 52457174 to 52457177 3 + TSS region transcription start site region 145198
Tssr145199 17 52458680 to 52458691 11 + TSS region transcription start site region 145199
Tssr145200 17 52468773 to 52468793 20 + TSS region transcription start site region 145200
Tssr145201 17 52468796 to 52468809 13 + TSS region transcription start site region 145201
Gm27217 17 52593393 to 52602660 9267 - antisense lncRNA gene predicted gene 27217
Cpgi9313 17 52601039 to 52601476 437 CpG island CpG island 9313
Cpgi9314 17 52602183 to 52602969 786 CpG island CpG island 9314
Tssr145202 17 52602242 to 52602284 42 + TSS region transcription start site region 145202
Tssr145203 17 52602285 to 52602295 10 + TSS region transcription start site region 145203
Tssr145204 17 52602397 to 52602437 40 + TSS region transcription start site region 145204