Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:50170148-50670195

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rftn1 17 49993258 to 50190497 197239 - protein coding gene raftlin lipid raft linker 1
Tssr148586 17 50180631 to 50180646 15 - TSS region transcription start site region 148586
Tssr145135 17 50181230 to 50181238 8 + TSS region transcription start site region 145135
Tssr145136 17 50181243 to 50181251 8 + TSS region transcription start site region 145136
Tssr148587 17 50182551 to 50182570 19 - TSS region transcription start site region 148587
Cpgi9303 17 50189547 to 50191175 1628 CpG island CpG island 9303
Tssr148588 17 50190256 to 50190265 9 - TSS region transcription start site region 148588
Tssr148589 17 50190287 to 50190292 5 - TSS region transcription start site region 148589
Tssr148590 17 50190413 to 50190489 76 - TSS region transcription start site region 148590
Tssr148591 17 50190535 to 50190542 7 - TSS region transcription start site region 148591
Tssr148592 17 50190653 to 50190662 9 - TSS region transcription start site region 148592
Gm37173 17 50210135 to 50219642 9507 + lincRNA gene predicted gene, 37173
D17Mit216 17 50211374 to 50211488 114 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 216
Gm9191 17 50212751 to 50214206 1455 - pseudogene predicted gene 9191
Gm18735 17 50227643 to 50228369 726 - pseudogene predicted gene, 18735
Gm41597 17 50235072 to 50236556 1484 - lincRNA gene predicted gene, 41597
Tssr148593 17 50239099 to 50239106 7 - TSS region transcription start site region 148593
Tssr145137 17 50239134 to 50239140 6 + TSS region transcription start site region 145137
Tssr145138 17 50239141 to 50239181 40 + TSS region transcription start site region 145138
Tssr145139 17 50239202 to 50239213 11 + TSS region transcription start site region 145139
AY702103 17 50239208 to 50246316 7108 + lincRNA gene cDNA sequence AY702103
Tssr145140 17 50239400 to 50239407 7 + TSS region transcription start site region 145140
Gm4669 17 50260978 to 50261265 287 + pseudogene predicted gene 4669
Dazl 17 50279393 to 50293620 14227 - protein coding gene deleted in azoospermia-like
Cpgi9304 17 50292606 to 50293999 1393 CpG island CpG island 9304
Tssr148594 17 50293592 to 50293606 14 - TSS region transcription start site region 148594
Tssr148595 17 50300358 to 50300364 6 - TSS region transcription start site region 148595
Gm49906 17 50339252 to 50398475 59223 + lincRNA gene predicted gene, 49906
Gm30958 17 50377591 to 50384177 6586 - lncRNA gene predicted gene, 30958
Tssr148596 17 50420135 to 50420144 9 - TSS region transcription start site region 148596
Tssr148597 17 50420148 to 50420195 47 - TSS region transcription start site region 148597
Gm31015 17 50424154 to 50430476 6322 + lncRNA gene predicted gene, 31015
Tssr148598 17 50455876 to 50455918 42 - TSS region transcription start site region 148598
Tssr145141 17 50470669 to 50470706 37 + TSS region transcription start site region 145141
Tssr148599 17 50495390 to 50495399 9 - TSS region transcription start site region 148599
Tssr145142 17 50508248 to 50508260 12 + TSS region transcription start site region 145142
Cpgi9305 17 50508500 to 50510228 1728 CpG island CpG island 9305
Tssr145143 17 50508893 to 50508928 35 + TSS region transcription start site region 145143
Tssr145144 17 50509075 to 50509098 23 + TSS region transcription start site region 145144
Tssr145145 17 50509270 to 50509354 84 + TSS region transcription start site region 145145
Plcl2 17 50509403 to 50688484 179081 + protein coding gene phospholipase C-like 2
Tssr145146 17 50509518 to 50509553 35 + TSS region transcription start site region 145146
Tssr145147 17 50509556 to 50509597 41 + TSS region transcription start site region 145147
Tssr145148 17 50509750 to 50509793 43 + TSS region transcription start site region 145148
Tssr145149 17 50513205 to 50513209 4 + TSS region transcription start site region 145149
Tssr145150 17 50518080 to 50518086 6 + TSS region transcription start site region 145150
D17Mit270 17 50520502 to 50520624 122 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology-270
Tssr145151 17 50525302 to 50525309 7 + TSS region transcription start site region 145151
Tssr145152 17 50528925 to 50528936 11 + TSS region transcription start site region 145152
Tssr145153 17 50528951 to 50528967 16 + TSS region transcription start site region 145153
Tssr145154 17 50528979 to 50528999 20 + TSS region transcription start site region 145154
Tssr145155 17 50530917 to 50530929 12 + TSS region transcription start site region 145155
Tssr145156 17 50539468 to 50539487 19 + TSS region transcription start site region 145156
Tssr145157 17 50596489 to 50596505 16 + TSS region transcription start site region 145157
Cpgi9306 17 50608373 to 50608571 198 CpG island CpG island 9306
Tssr145158 17 50643093 to 50643105 12 + TSS region transcription start site region 145158
Tssr148600 17 50668973 to 50668976 3 - TSS region transcription start site region 148600