Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:50113500-50905228

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rftn1 17 49993258 to 50190497 197239 - protein coding gene raftlin lipid raft linker 1
Gm49901 17 50114019 to 50117459 3440 + lincRNA gene predicted gene, 49901
Tssr148574 17 50124298 to 50124314 16 - TSS region transcription start site region 148574
D17Mit117 17 50131150 to 50131271 121 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 117
Tssr148575 17 50136836 to 50136849 13 - TSS region transcription start site region 148575
Tssr148576 17 50154892 to 50154906 14 - TSS region transcription start site region 148576
Tssr148577 17 50156172 to 50156205 33 - TSS region transcription start site region 148577
Tssr148578 17 50156231 to 50156252 21 - TSS region transcription start site region 148578
Tssr148579 17 50157399 to 50157407 8 - TSS region transcription start site region 148579
Tssr148580 17 50158813 to 50158825 12 - TSS region transcription start site region 148580
Tssr148581 17 50164091 to 50164111 20 - TSS region transcription start site region 148581
Tssr148582 17 50164144 to 50164146 2 - TSS region transcription start site region 148582
Tssr148583 17 50164176 to 50164232 56 - TSS region transcription start site region 148583
Tssr148584 17 50164309 to 50164325 16 - TSS region transcription start site region 148584
Tssr148585 17 50169893 to 50169925 32 - TSS region transcription start site region 148585
Tssr148586 17 50180631 to 50180646 15 - TSS region transcription start site region 148586
Tssr145135 17 50181230 to 50181238 8 + TSS region transcription start site region 145135
Tssr145136 17 50181243 to 50181251 8 + TSS region transcription start site region 145136
Tssr148587 17 50182551 to 50182570 19 - TSS region transcription start site region 148587
Cpgi9303 17 50189547 to 50191175 1628 CpG island CpG island 9303
Tssr148588 17 50190256 to 50190265 9 - TSS region transcription start site region 148588
Tssr148589 17 50190287 to 50190292 5 - TSS region transcription start site region 148589
Tssr148590 17 50190413 to 50190489 76 - TSS region transcription start site region 148590
Tssr148591 17 50190535 to 50190542 7 - TSS region transcription start site region 148591
Tssr148592 17 50190653 to 50190662 9 - TSS region transcription start site region 148592
Gm37173 17 50210135 to 50219642 9507 + lincRNA gene predicted gene, 37173
D17Mit216 17 50211374 to 50211488 114 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 216
Gm9191 17 50212751 to 50214206 1455 - pseudogene predicted gene 9191
Gm18735 17 50227643 to 50228369 726 - pseudogene predicted gene, 18735
Gm41597 17 50235072 to 50236556 1484 - lincRNA gene predicted gene, 41597
Tssr148593 17 50239099 to 50239106 7 - TSS region transcription start site region 148593
Tssr145137 17 50239134 to 50239140 6 + TSS region transcription start site region 145137
Tssr145138 17 50239141 to 50239181 40 + TSS region transcription start site region 145138
Tssr145139 17 50239202 to 50239213 11 + TSS region transcription start site region 145139
AY702103 17 50239208 to 50246316 7108 + lincRNA gene cDNA sequence AY702103
Tssr145140 17 50239400 to 50239407 7 + TSS region transcription start site region 145140
Gm4669 17 50260978 to 50261265 287 + pseudogene predicted gene 4669
Dazl 17 50279393 to 50293620 14227 - protein coding gene deleted in azoospermia-like
Cpgi9304 17 50292606 to 50293999 1393 CpG island CpG island 9304
Tssr148594 17 50293592 to 50293606 14 - TSS region transcription start site region 148594
Tssr148595 17 50300358 to 50300364 6 - TSS region transcription start site region 148595
Gm49906 17 50339252 to 50398475 59223 + lincRNA gene predicted gene, 49906
Gm30958 17 50377591 to 50384177 6586 - lncRNA gene predicted gene, 30958
Tssr148596 17 50420135 to 50420144 9 - TSS region transcription start site region 148596
Tssr148597 17 50420148 to 50420195 47 - TSS region transcription start site region 148597
Gm31015 17 50424154 to 50430476 6322 + lncRNA gene predicted gene, 31015
Tssr148598 17 50455876 to 50455918 42 - TSS region transcription start site region 148598
Tssr145141 17 50470669 to 50470706 37 + TSS region transcription start site region 145141
Tssr148599 17 50495390 to 50495399 9 - TSS region transcription start site region 148599
Tssr145142 17 50508248 to 50508260 12 + TSS region transcription start site region 145142
Cpgi9305 17 50508500 to 50510228 1728 CpG island CpG island 9305
Tssr145143 17 50508893 to 50508928 35 + TSS region transcription start site region 145143
Tssr145144 17 50509075 to 50509098 23 + TSS region transcription start site region 145144
Tssr145145 17 50509270 to 50509354 84 + TSS region transcription start site region 145145
Plcl2 17 50509403 to 50688484 179081 + protein coding gene phospholipase C-like 2
Tssr145146 17 50509518 to 50509553 35 + TSS region transcription start site region 145146
Tssr145147 17 50509556 to 50509597 41 + TSS region transcription start site region 145147
Tssr145148 17 50509750 to 50509793 43 + TSS region transcription start site region 145148
Tssr145149 17 50513205 to 50513209 4 + TSS region transcription start site region 145149
Tssr145150 17 50518080 to 50518086 6 + TSS region transcription start site region 145150
D17Mit270 17 50520502 to 50520624 122 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology-270
Tssr145151 17 50525302 to 50525309 7 + TSS region transcription start site region 145151
Tssr145152 17 50528925 to 50528936 11 + TSS region transcription start site region 145152
Tssr145153 17 50528951 to 50528967 16 + TSS region transcription start site region 145153
Tssr145154 17 50528979 to 50528999 20 + TSS region transcription start site region 145154
Tssr145155 17 50530917 to 50530929 12 + TSS region transcription start site region 145155
Tssr145156 17 50539468 to 50539487 19 + TSS region transcription start site region 145156
Tssr145157 17 50596489 to 50596505 16 + TSS region transcription start site region 145157
Cpgi9306 17 50608373 to 50608571 198 CpG island CpG island 9306
Tssr145158 17 50643093 to 50643105 12 + TSS region transcription start site region 145158
Tssr148600 17 50668973 to 50668976 3 - TSS region transcription start site region 148600
Cpgi9307 17 50677451 to 50677625 174 CpG island CpG island 9307
Cpgi9308 17 50698508 to 50698704 196 CpG island CpG island 9308
Tssr145159 17 50698542 to 50698553 11 + TSS region transcription start site region 145159
Gm7334 17 50698688 to 50699443 755 + pseudogene predicted gene 7334
Tbc1d5 17 50733124 to 51179352 446228 - protein coding gene TBC1 domain family, member 5
Gm41598 17 50791436 to 50793590 2154 + lncRNA gene predicted gene, 41598
Gm31083 17 50879728 to 50899481 19753 + lncRNA gene predicted gene, 31083
Tssr148601 17 50879814 to 50879853 39 - TSS region transcription start site region 148601
Tssr5159 17 50891429 to 50891431 2 + TSS region transcription start site region 5159