Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:48980028-50880151

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146 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq4 17 44705665 to 49059374 4353709 QTL conditioned fear QTL 4
Lrfn2 17 48932379 to 49097588 165209 + protein coding gene leucine rich repeat and fibronectin type III domain containing 2
Tssr145124 17 49004187 to 49004190 3 + TSS region transcription start site region 145124
Tssr148552 17 49009741 to 49009775 34 - TSS region transcription start site region 148552
Tssr148553 17 49033296 to 49033344 48 - TSS region transcription start site region 148553
Tssr145125 17 49087119 to 49087124 5 + TSS region transcription start site region 145125
Gm44304 17 49096289 to 49096433 144 - miRNA gene predicted gene, 44304
1700008K24Rik 17 49112264 to 49113533 1269 - lincRNA gene RIKEN cDNA 1700008K24 gene
Tssr148554 17 49113466 to 49113469 3 - TSS region transcription start site region 148554
Tssr148555 17 49113477 to 49113520 43 - TSS region transcription start site region 148555
Tssr148556 17 49113526 to 49113533 7 - TSS region transcription start site region 148556
Tssr5156 17 49117628 to 49117630 2 + TSS region transcription start site region 5156
Gm9586 17 49164711 to 49165758 1047 - pseudogene predicted gene 9586
Gm30475 17 49167315 to 49172769 5454 - lncRNA gene predicted gene, 30475
Cpgi9297 17 49171659 to 49171940 281 CpG island CpG island 9297
Cpgi9298 17 49212813 to 49213102 289 CpG island CpG island 9298
Gm30532 17 49240541 to 49264331 23790 - lncRNA gene predicted gene, 30532
D17Mit67 17 49251704 to 49251844 140 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 67
Tssr145126 17 49292740 to 49292750 10 + TSS region transcription start site region 145126
Gm22978 17 49292742 to 49292901 159 + snRNA gene predicted gene, 22978
Gm17830 17 49304479 to 49312960 8481 - lincRNA gene predicted gene, 17830
Gm18067 17 49330767 to 49331497 730 - pseudogene predicted gene, 18067
Gm41594 17 49378323 to 49379520 1197 + lncRNA gene predicted gene, 41594
Gm20540 17 49427938 to 49429240 1302 - unclassified non-coding RNA gene predicted gene 20540
Cpgi9299 17 49428190 to 49428635 445 CpG island CpG island 9299
Tssr145127 17 49428359 to 49428445 86 + TSS region transcription start site region 145127
Mocs1 17 49428364 to 49455435 27071 + protein coding gene molybdenum cofactor synthesis 1
Tssr145128 17 49439453 to 49439487 34 + TSS region transcription start site region 145128
Gm41595 17 49442068 to 49443479 1411 - lncRNA gene predicted gene, 41595
Tssr145129 17 49449411 to 49449417 6 + TSS region transcription start site region 145129
Tssr145130 17 49454780 to 49454794 14 + TSS region transcription start site region 145130
Tssr145131 17 49454836 to 49454848 12 + TSS region transcription start site region 145131
Tssr145132 17 49454937 to 49454954 17 + TSS region transcription start site region 145132
Tssr145133 17 49454966 to 49454985 19 + TSS region transcription start site region 145133
Daam2 17 49456022 to 49564343 108321 - protein coding gene dishevelled associated activator of morphogenesis 2
Tssr148557 17 49479770 to 49479782 12 - TSS region transcription start site region 148557
Tssr148558 17 49509854 to 49509877 23 - TSS region transcription start site region 148558
Tssr148559 17 49509880 to 49509897 17 - TSS region transcription start site region 148559
Tssr148560 17 49509938 to 49509943 5 - TSS region transcription start site region 148560
Tssr148561 17 49529054 to 49529063 9 - TSS region transcription start site region 148561
Tssr148562 17 49529103 to 49529124 21 - TSS region transcription start site region 148562
Tssr148563 17 49550028 to 49550035 7 - TSS region transcription start site region 148563
Tssr148564 17 49550101 to 49550117 16 - TSS region transcription start site region 148564
D17Mit84 17 49552972 to 49553083 111 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 84
Cpgi9300 17 49563872 to 49564588 716 CpG island CpG island 9300
Tssr148565 17 49564262 to 49564322 60 - TSS region transcription start site region 148565
D17Mit108 17 49605221 to 49605333 112 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 108
Cpgi9301 17 49614893 to 49615691 798 CpG island CpG island 9301
Tssr145134 17 49615104 to 49615151 47 + TSS region transcription start site region 145134
Kif6 17 49615136 to 49909847 294711 + protein coding gene kinesin family member 6
Tssr148566 17 49676480 to 49676486 6 - TSS region transcription start site region 148566
Tssr5157 17 49738732 to 49738745 13 + TSS region transcription start site region 5157
Tssr148567 17 49796283 to 49796286 3 - TSS region transcription start site region 148567
Gm16555 17 49817789 to 49821573 3784 - antisense lncRNA gene predicted gene 16555
Tssr148568 17 49821792 to 49821838 46 - TSS region transcription start site region 148568
D17Mit106 17 49860455 to 49860604 149 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 106
Gm16554 17 49894742 to 49895967 1225 - antisense lncRNA gene predicted gene 16554
Cpgi9302 17 49900897 to 49901068 171 CpG island CpG island 9302
Gm19465 17 49927094 to 49931821 4727 + protein coding gene predicted gene, 19465
Gm49899 17 49930028 to 49930151 123 + pseudogene predicted gene, 49899
Gm49900 17 49931075 to 49931318 243 + pseudogene predicted gene, 49900
Tssr5158 17 49957537 to 49957546 9 + TSS region transcription start site region 5158
Rftn1 17 49993258 to 50190497 197239 - protein coding gene raftlin lipid raft linker 1
Tssr148569 17 50091610 to 50091624 14 - TSS region transcription start site region 148569
Tssr148570 17 50094254 to 50094274 20 - TSS region transcription start site region 148570
Tssr148571 17 50094277 to 50094288 11 - TSS region transcription start site region 148571
Tssr148572 17 50101174 to 50101193 19 - TSS region transcription start site region 148572
Tssr148573 17 50101339 to 50101376 37 - TSS region transcription start site region 148573
Gm49901 17 50114019 to 50117459 3440 + lincRNA gene predicted gene, 49901
Tssr148574 17 50124298 to 50124314 16 - TSS region transcription start site region 148574
D17Mit117 17 50131150 to 50131271 121 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 117
Tssr148575 17 50136836 to 50136849 13 - TSS region transcription start site region 148575
Tssr148576 17 50154892 to 50154906 14 - TSS region transcription start site region 148576
Tssr148577 17 50156172 to 50156205 33 - TSS region transcription start site region 148577
Tssr148578 17 50156231 to 50156252 21 - TSS region transcription start site region 148578
Tssr148579 17 50157399 to 50157407 8 - TSS region transcription start site region 148579
Tssr148580 17 50158813 to 50158825 12 - TSS region transcription start site region 148580
Tssr148581 17 50164091 to 50164111 20 - TSS region transcription start site region 148581
Tssr148582 17 50164144 to 50164146 2 - TSS region transcription start site region 148582
Tssr148583 17 50164176 to 50164232 56 - TSS region transcription start site region 148583
Tssr148584 17 50164309 to 50164325 16 - TSS region transcription start site region 148584
Tssr148585 17 50169893 to 50169925 32 - TSS region transcription start site region 148585
Tssr148586 17 50180631 to 50180646 15 - TSS region transcription start site region 148586
Tssr145135 17 50181230 to 50181238 8 + TSS region transcription start site region 145135
Tssr145136 17 50181243 to 50181251 8 + TSS region transcription start site region 145136
Tssr148587 17 50182551 to 50182570 19 - TSS region transcription start site region 148587
Cpgi9303 17 50189547 to 50191175 1628 CpG island CpG island 9303
Tssr148588 17 50190256 to 50190265 9 - TSS region transcription start site region 148588
Tssr148589 17 50190287 to 50190292 5 - TSS region transcription start site region 148589
Tssr148590 17 50190413 to 50190489 76 - TSS region transcription start site region 148590
Tssr148591 17 50190535 to 50190542 7 - TSS region transcription start site region 148591
Tssr148592 17 50190653 to 50190662 9 - TSS region transcription start site region 148592
Gm37173 17 50210135 to 50219642 9507 + lincRNA gene predicted gene, 37173
D17Mit216 17 50211374 to 50211488 114 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 216
Gm9191 17 50212751 to 50214206 1455 - pseudogene predicted gene 9191
Gm18735 17 50227643 to 50228369 726 - pseudogene predicted gene, 18735
Gm41597 17 50235072 to 50236556 1484 - lincRNA gene predicted gene, 41597
Tssr148593 17 50239099 to 50239106 7 - TSS region transcription start site region 148593
Tssr145137 17 50239134 to 50239140 6 + TSS region transcription start site region 145137
Tssr145138 17 50239141 to 50239181 40 + TSS region transcription start site region 145138
Tssr145139 17 50239202 to 50239213 11 + TSS region transcription start site region 145139
AY702103 17 50239208 to 50246316 7108 + lincRNA gene cDNA sequence AY702103
Tssr145140 17 50239400 to 50239407 7 + TSS region transcription start site region 145140
Gm4669 17 50260978 to 50261265 287 + pseudogene predicted gene 4669
Dazl 17 50279393 to 50293620 14227 - protein coding gene deleted in azoospermia-like
Cpgi9304 17 50292606 to 50293999 1393 CpG island CpG island 9304
Tssr148594 17 50293592 to 50293606 14 - TSS region transcription start site region 148594
Tssr148595 17 50300358 to 50300364 6 - TSS region transcription start site region 148595
Gm49906 17 50339252 to 50398475 59223 + lincRNA gene predicted gene, 49906
Gm30958 17 50377591 to 50384177 6586 - lncRNA gene predicted gene, 30958
Tssr148596 17 50420135 to 50420144 9 - TSS region transcription start site region 148596
Tssr148597 17 50420148 to 50420195 47 - TSS region transcription start site region 148597
Gm31015 17 50424154 to 50430476 6322 + lncRNA gene predicted gene, 31015
Tssr148598 17 50455876 to 50455918 42 - TSS region transcription start site region 148598
Tssr145141 17 50470669 to 50470706 37 + TSS region transcription start site region 145141
Tssr148599 17 50495390 to 50495399 9 - TSS region transcription start site region 148599
Tssr145142 17 50508248 to 50508260 12 + TSS region transcription start site region 145142
Cpgi9305 17 50508500 to 50510228 1728 CpG island CpG island 9305
Tssr145143 17 50508893 to 50508928 35 + TSS region transcription start site region 145143
Tssr145144 17 50509075 to 50509098 23 + TSS region transcription start site region 145144
Tssr145145 17 50509270 to 50509354 84 + TSS region transcription start site region 145145
Plcl2 17 50509403 to 50688484 179081 + protein coding gene phospholipase C-like 2
Tssr145146 17 50509518 to 50509553 35 + TSS region transcription start site region 145146
Tssr145147 17 50509556 to 50509597 41 + TSS region transcription start site region 145147
Tssr145148 17 50509750 to 50509793 43 + TSS region transcription start site region 145148
Tssr145149 17 50513205 to 50513209 4 + TSS region transcription start site region 145149
Tssr145150 17 50518080 to 50518086 6 + TSS region transcription start site region 145150
D17Mit270 17 50520502 to 50520624 122 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology-270
Tssr145151 17 50525302 to 50525309 7 + TSS region transcription start site region 145151
Tssr145152 17 50528925 to 50528936 11 + TSS region transcription start site region 145152
Tssr145153 17 50528951 to 50528967 16 + TSS region transcription start site region 145153
Tssr145154 17 50528979 to 50528999 20 + TSS region transcription start site region 145154
Tssr145155 17 50530917 to 50530929 12 + TSS region transcription start site region 145155
Tssr145156 17 50539468 to 50539487 19 + TSS region transcription start site region 145156
Tssr145157 17 50596489 to 50596505 16 + TSS region transcription start site region 145157
Cpgi9306 17 50608373 to 50608571 198 CpG island CpG island 9306
Tssr145158 17 50643093 to 50643105 12 + TSS region transcription start site region 145158
Tssr148600 17 50668973 to 50668976 3 - TSS region transcription start site region 148600
Cpgi9307 17 50677451 to 50677625 174 CpG island CpG island 9307
Cpgi9308 17 50698508 to 50698704 196 CpG island CpG island 9308
Tssr145159 17 50698542 to 50698553 11 + TSS region transcription start site region 145159
Gm7334 17 50698688 to 50699443 755 + pseudogene predicted gene 7334
Tbc1d5 17 50733124 to 51179352 446228 - protein coding gene TBC1 domain family, member 5
Gm41598 17 50791436 to 50793590 2154 + lncRNA gene predicted gene, 41598
Gm31083 17 50879728 to 50899481 19753 + lncRNA gene predicted gene, 31083
Tssr148601 17 50879814 to 50879853 39 - TSS region transcription start site region 148601