Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:48517813-49908102

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bhr3 17 3924615 to 48559063 44634448 QTL bronchial hyperresponsiveness 3
Cfq4 17 44705665 to 49059374 4353709 QTL conditioned fear QTL 4
Unc5cl 17 48454901 to 48539714 84813 + protein coding gene unc-5 family C-terminal like
Tssr5154 17 48518047 to 48518050 3 - TSS region transcription start site region 5154
Cpgi9293 17 48539455 to 48539664 209 CpG island CpG island 9293
Cpgi9294 17 48545643 to 48546150 507 CpG island CpG island 9294
Gm49896 17 48556733 to 48572187 15454 + lincRNA gene predicted gene, 49896
D17Mit177 17 48558951 to 48559063 112 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 177
Gm30419 17 48582943 to 48584111 1168 + lncRNA gene predicted gene, 30419
Tssr5155 17 48605397 to 48605402 5 + TSS region transcription start site region 5155
Cpgi9295 17 48611062 to 48611816 754 CpG island CpG island 9295
Gm24071 17 48617823 to 48617954 131 + snoRNA gene predicted gene, 24071
Tssr148547 17 48647662 to 48647679 17 - TSS region transcription start site region 148547
Tssr148548 17 48682969 to 48682970 1 - TSS region transcription start site region 148548
Gm23642 17 48692450 to 48692707 257 - unclassified non-coding RNA gene predicted gene, 23642
Obrq14 17 48706312 to 52659396 3953084 QTL obesity resistance QTL 14
D17Mit178 17 48706312 to 48706448 136 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 178
D17Dcr13 17 48706312 to 48706430 118 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 13
Gm45330 17 48730399 to 48738746 8347 - lincRNA gene predicted gene 45330
Tssr148549 17 48738730 to 48738758 28 - TSS region transcription start site region 148549
Tssr148550 17 48794854 to 48794867 13 - TSS region transcription start site region 148550
D17Mit157 17 48868903 to 48869080 177 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 157
Cpgi9296 17 48931446 to 48933340 1894 CpG island CpG island 9296
Tssr145121 17 48931801 to 48931813 12 + TSS region transcription start site region 145121
Tssr145122 17 48932368 to 48932399 31 + TSS region transcription start site region 145122
Lrfn2 17 48932379 to 49097588 165209 + protein coding gene leucine rich repeat and fibronectin type III domain containing 2
Tssr148551 17 48963877 to 48963903 26 - TSS region transcription start site region 148551
Tssr145123 17 48974054 to 48974067 13 + TSS region transcription start site region 145123
Tssr145124 17 49004187 to 49004190 3 + TSS region transcription start site region 145124
Tssr148552 17 49009741 to 49009775 34 - TSS region transcription start site region 148552
Tssr148553 17 49033296 to 49033344 48 - TSS region transcription start site region 148553
Tssr145125 17 49087119 to 49087124 5 + TSS region transcription start site region 145125
Gm44304 17 49096289 to 49096433 144 - miRNA gene predicted gene, 44304
1700008K24Rik 17 49112264 to 49113533 1269 - lincRNA gene RIKEN cDNA 1700008K24 gene
Tssr148554 17 49113466 to 49113469 3 - TSS region transcription start site region 148554
Tssr148555 17 49113477 to 49113520 43 - TSS region transcription start site region 148555
Tssr148556 17 49113526 to 49113533 7 - TSS region transcription start site region 148556
Tssr5156 17 49117628 to 49117630 2 + TSS region transcription start site region 5156
Gm9586 17 49164711 to 49165758 1047 - pseudogene predicted gene 9586
Gm30475 17 49167315 to 49172769 5454 - lncRNA gene predicted gene, 30475
Cpgi9297 17 49171659 to 49171940 281 CpG island CpG island 9297
Cpgi9298 17 49212813 to 49213102 289 CpG island CpG island 9298
Gm30532 17 49240541 to 49264331 23790 - lncRNA gene predicted gene, 30532
D17Mit67 17 49251704 to 49251844 140 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 67
Tssr145126 17 49292740 to 49292750 10 + TSS region transcription start site region 145126
Gm22978 17 49292742 to 49292901 159 + snRNA gene predicted gene, 22978
Gm17830 17 49304479 to 49312960 8481 - lincRNA gene predicted gene, 17830
Gm18067 17 49330767 to 49331497 730 - pseudogene predicted gene, 18067
Gm41594 17 49378323 to 49379520 1197 + lncRNA gene predicted gene, 41594
Gm20540 17 49427938 to 49429240 1302 - unclassified non-coding RNA gene predicted gene 20540
Cpgi9299 17 49428190 to 49428635 445 CpG island CpG island 9299
Tssr145127 17 49428359 to 49428445 86 + TSS region transcription start site region 145127
Mocs1 17 49428364 to 49455435 27071 + protein coding gene molybdenum cofactor synthesis 1
Tssr145128 17 49439453 to 49439487 34 + TSS region transcription start site region 145128
Gm41595 17 49442068 to 49443479 1411 - lncRNA gene predicted gene, 41595
Tssr145129 17 49449411 to 49449417 6 + TSS region transcription start site region 145129
Tssr145130 17 49454780 to 49454794 14 + TSS region transcription start site region 145130
Tssr145131 17 49454836 to 49454848 12 + TSS region transcription start site region 145131
Tssr145132 17 49454937 to 49454954 17 + TSS region transcription start site region 145132
Tssr145133 17 49454966 to 49454985 19 + TSS region transcription start site region 145133
Daam2 17 49456022 to 49564343 108321 - protein coding gene dishevelled associated activator of morphogenesis 2
Tssr148557 17 49479770 to 49479782 12 - TSS region transcription start site region 148557
Tssr148558 17 49509854 to 49509877 23 - TSS region transcription start site region 148558
Tssr148559 17 49509880 to 49509897 17 - TSS region transcription start site region 148559
Tssr148560 17 49509938 to 49509943 5 - TSS region transcription start site region 148560
Tssr148561 17 49529054 to 49529063 9 - TSS region transcription start site region 148561
Tssr148562 17 49529103 to 49529124 21 - TSS region transcription start site region 148562
Tssr148563 17 49550028 to 49550035 7 - TSS region transcription start site region 148563
Tssr148564 17 49550101 to 49550117 16 - TSS region transcription start site region 148564
D17Mit84 17 49552972 to 49553083 111 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 84
Cpgi9300 17 49563872 to 49564588 716 CpG island CpG island 9300
Tssr148565 17 49564262 to 49564322 60 - TSS region transcription start site region 148565
D17Mit108 17 49605221 to 49605333 112 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 108
Cpgi9301 17 49614893 to 49615691 798 CpG island CpG island 9301
Tssr145134 17 49615104 to 49615151 47 + TSS region transcription start site region 145134
Kif6 17 49615136 to 49909847 294711 + protein coding gene kinesin family member 6
Tssr148566 17 49676480 to 49676486 6 - TSS region transcription start site region 148566
Tssr5157 17 49738732 to 49738745 13 + TSS region transcription start site region 5157
Tssr148567 17 49796283 to 49796286 3 - TSS region transcription start site region 148567
Gm16555 17 49817789 to 49821573 3784 - antisense lncRNA gene predicted gene 16555
Tssr148568 17 49821792 to 49821838 46 - TSS region transcription start site region 148568
D17Mit106 17 49860455 to 49860604 149 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 106
Gm16554 17 49894742 to 49895967 1225 - antisense lncRNA gene predicted gene 16554
Cpgi9302 17 49900897 to 49901068 171 CpG island CpG island 9302