Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:48374187-49634190

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116 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bhr3 17 3924615 to 48559063 44634448 QTL bronchial hyperresponsiveness 3
Cfq4 17 44705665 to 49059374 4353709 QTL conditioned fear QTL 4
Nfya 17 48386885 to 48409901 23016 - protein coding gene nuclear transcription factor-Y alpha
Tssr148528 17 48387966 to 48387992 26 - TSS region transcription start site region 148528
Tssr148529 17 48387996 to 48388017 21 - TSS region transcription start site region 148529
Tssr148530 17 48388148 to 48388162 14 - TSS region transcription start site region 148530
Tssr148531 17 48388393 to 48388404 11 - TSS region transcription start site region 148531
Tssr148532 17 48388596 to 48388609 13 - TSS region transcription start site region 148532
Cpgi9291 17 48408931 to 48410448 1517 CpG island CpG island 9291
Tssr148533 17 48408985 to 48408996 11 - TSS region transcription start site region 148533
Tssr148534 17 48409010 to 48409027 17 - TSS region transcription start site region 148534
Tssr145110 17 48409173 to 48409178 5 + TSS region transcription start site region 145110
Tssr148535 17 48409477 to 48409525 48 - TSS region transcription start site region 148535
Tssr148536 17 48409588 to 48409599 11 - TSS region transcription start site region 148536
Tssr148537 17 48409729 to 48409766 37 - TSS region transcription start site region 148537
Tssr145111 17 48409980 to 48410104 124 + TSS region transcription start site region 145111
Oard1 17 48410014 to 48417266 7252 + protein coding gene O-acyl-ADP-ribose deacylase 1
Tssr145112 17 48410148 to 48410162 14 + TSS region transcription start site region 145112
Tssr145113 17 48410182 to 48410202 20 + TSS region transcription start site region 145113
Tssr145114 17 48410206 to 48410262 56 + TSS region transcription start site region 145114
Tssr145115 17 48410269 to 48410288 19 + TSS region transcription start site region 145115
Tssr145116 17 48410477 to 48410490 13 + TSS region transcription start site region 145116
Tssr145117 17 48411787 to 48411792 5 + TSS region transcription start site region 145117
Gm49893 17 48417280 to 48421634 4354 + antisense lncRNA gene predicted gene, 49893
Tssr148538 17 48418176 to 48418179 3 - TSS region transcription start site region 148538
Apobec2 17 48419231 to 48432728 13497 - protein coding gene apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2
Gm30283 17 48423462 to 48425554 2092 + lncRNA gene predicted gene, 30283
Tssr148539 17 48432608 to 48432627 19 - TSS region transcription start site region 148539
Tssr148540 17 48432723 to 48432741 18 - TSS region transcription start site region 148540
Tssr148541 17 48432846 to 48432854 8 - TSS region transcription start site region 148541
Cpgi9292 17 48433084 to 48433291 207 CpG island CpG island 9292
D17Mit236 17 48444812 to 48444903 91 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 236
Tssr148542 17 48445907 to 48445908 1 - TSS region transcription start site region 148542
Tspo2 17 48447907 to 48451522 3615 - protein coding gene translocator protein 2
Tssr148543 17 48450780 to 48450796 16 - TSS region transcription start site region 148543
Tssr145118 17 48450931 to 48450945 14 + TSS region transcription start site region 145118
Tssr148544 17 48451479 to 48451509 30 - TSS region transcription start site region 148544
Tssr148545 17 48451510 to 48451530 20 - TSS region transcription start site region 148545
Tssr148546 17 48451533 to 48451536 3 - TSS region transcription start site region 148546
Tssr145119 17 48454891 to 48454907 16 + TSS region transcription start site region 145119
Unc5cl 17 48454901 to 48539714 84813 + protein coding gene unc-5 family C-terminal like
Tssr145120 17 48462355 to 48462409 54 + TSS region transcription start site region 145120
Tssr5153 17 48501998 to 48502000 2 + TSS region transcription start site region 5153
Tssr5154 17 48518047 to 48518050 3 - TSS region transcription start site region 5154
Cpgi9293 17 48539455 to 48539664 209 CpG island CpG island 9293
Cpgi9294 17 48545643 to 48546150 507 CpG island CpG island 9294
Gm49896 17 48556733 to 48572187 15454 + lincRNA gene predicted gene, 49896
D17Mit177 17 48558951 to 48559063 112 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 177
Gm30419 17 48582943 to 48584111 1168 + lncRNA gene predicted gene, 30419
Tssr5155 17 48605397 to 48605402 5 + TSS region transcription start site region 5155
Cpgi9295 17 48611062 to 48611816 754 CpG island CpG island 9295
Gm24071 17 48617823 to 48617954 131 + snoRNA gene predicted gene, 24071
Tssr148547 17 48647662 to 48647679 17 - TSS region transcription start site region 148547
Tssr148548 17 48682969 to 48682970 1 - TSS region transcription start site region 148548
Gm23642 17 48692450 to 48692707 257 - unclassified non-coding RNA gene predicted gene, 23642
Obrq14 17 48706312 to 52659396 3953084 QTL obesity resistance QTL 14
D17Mit178 17 48706312 to 48706448 136 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 178
D17Dcr13 17 48706312 to 48706430 118 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 13
Gm45330 17 48730399 to 48738746 8347 - lincRNA gene predicted gene 45330
Tssr148549 17 48738730 to 48738758 28 - TSS region transcription start site region 148549
Tssr148550 17 48794854 to 48794867 13 - TSS region transcription start site region 148550
D17Mit157 17 48868903 to 48869080 177 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 157
Cpgi9296 17 48931446 to 48933340 1894 CpG island CpG island 9296
Tssr145121 17 48931801 to 48931813 12 + TSS region transcription start site region 145121
Tssr145122 17 48932368 to 48932399 31 + TSS region transcription start site region 145122
Lrfn2 17 48932379 to 49097588 165209 + protein coding gene leucine rich repeat and fibronectin type III domain containing 2
Tssr148551 17 48963877 to 48963903 26 - TSS region transcription start site region 148551
Tssr145123 17 48974054 to 48974067 13 + TSS region transcription start site region 145123
Tssr145124 17 49004187 to 49004190 3 + TSS region transcription start site region 145124
Tssr148552 17 49009741 to 49009775 34 - TSS region transcription start site region 148552
Tssr148553 17 49033296 to 49033344 48 - TSS region transcription start site region 148553
Tssr145125 17 49087119 to 49087124 5 + TSS region transcription start site region 145125
Gm44304 17 49096289 to 49096433 144 - miRNA gene predicted gene, 44304
1700008K24Rik 17 49112264 to 49113533 1269 - lincRNA gene RIKEN cDNA 1700008K24 gene
Tssr148554 17 49113466 to 49113469 3 - TSS region transcription start site region 148554
Tssr148555 17 49113477 to 49113520 43 - TSS region transcription start site region 148555
Tssr148556 17 49113526 to 49113533 7 - TSS region transcription start site region 148556
Tssr5156 17 49117628 to 49117630 2 + TSS region transcription start site region 5156
Gm9586 17 49164711 to 49165758 1047 - pseudogene predicted gene 9586
Gm30475 17 49167315 to 49172769 5454 - lncRNA gene predicted gene, 30475
Cpgi9297 17 49171659 to 49171940 281 CpG island CpG island 9297
Cpgi9298 17 49212813 to 49213102 289 CpG island CpG island 9298
Gm30532 17 49240541 to 49264331 23790 - lncRNA gene predicted gene, 30532
D17Mit67 17 49251704 to 49251844 140 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 67
Tssr145126 17 49292740 to 49292750 10 + TSS region transcription start site region 145126
Gm22978 17 49292742 to 49292901 159 + snRNA gene predicted gene, 22978
Gm17830 17 49304479 to 49312960 8481 - lincRNA gene predicted gene, 17830
Gm18067 17 49330767 to 49331497 730 - pseudogene predicted gene, 18067
Gm41594 17 49378323 to 49379520 1197 + lncRNA gene predicted gene, 41594
Gm20540 17 49427938 to 49429240 1302 - unclassified non-coding RNA gene predicted gene 20540
Cpgi9299 17 49428190 to 49428635 445 CpG island CpG island 9299
Tssr145127 17 49428359 to 49428445 86 + TSS region transcription start site region 145127
Mocs1 17 49428364 to 49455435 27071 + protein coding gene molybdenum cofactor synthesis 1
Tssr145128 17 49439453 to 49439487 34 + TSS region transcription start site region 145128
Gm41595 17 49442068 to 49443479 1411 - lncRNA gene predicted gene, 41595
Tssr145129 17 49449411 to 49449417 6 + TSS region transcription start site region 145129
Tssr145130 17 49454780 to 49454794 14 + TSS region transcription start site region 145130
Tssr145131 17 49454836 to 49454848 12 + TSS region transcription start site region 145131
Tssr145132 17 49454937 to 49454954 17 + TSS region transcription start site region 145132
Tssr145133 17 49454966 to 49454985 19 + TSS region transcription start site region 145133
Daam2 17 49456022 to 49564343 108321 - protein coding gene dishevelled associated activator of morphogenesis 2
Tssr148557 17 49479770 to 49479782 12 - TSS region transcription start site region 148557
Tssr148558 17 49509854 to 49509877 23 - TSS region transcription start site region 148558
Tssr148559 17 49509880 to 49509897 17 - TSS region transcription start site region 148559
Tssr148560 17 49509938 to 49509943 5 - TSS region transcription start site region 148560
Tssr148561 17 49529054 to 49529063 9 - TSS region transcription start site region 148561
Tssr148562 17 49529103 to 49529124 21 - TSS region transcription start site region 148562
Tssr148563 17 49550028 to 49550035 7 - TSS region transcription start site region 148563
Tssr148564 17 49550101 to 49550117 16 - TSS region transcription start site region 148564
D17Mit84 17 49552972 to 49553083 111 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 84
Cpgi9300 17 49563872 to 49564588 716 CpG island CpG island 9300
Tssr148565 17 49564262 to 49564322 60 - TSS region transcription start site region 148565
D17Mit108 17 49605221 to 49605333 112 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 108
Cpgi9301 17 49614893 to 49615691 798 CpG island CpG island 9301
Tssr145134 17 49615104 to 49615151 47 + TSS region transcription start site region 145134
Kif6 17 49615136 to 49909847 294711 + protein coding gene kinesin family member 6