Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:48159921-48439941

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
A530064D06Rik 17 48151896 to 48167257 15361 - protein coding gene RIKEN cDNA A530064D06 gene
Tssr148518 17 48167187 to 48167218 31 - TSS region transcription start site region 148518
Tssr148519 17 48167265 to 48167286 21 - TSS region transcription start site region 148519
Tssr145067 17 48185581 to 48185588 7 + TSS region transcription start site region 145067
Tssr148520 17 48232616 to 48232649 33 - TSS region transcription start site region 148520
Tssr145068 17 48232755 to 48232777 22 + TSS region transcription start site region 145068
Trem1 17 48232768 to 48246924 14156 + protein coding gene triggering receptor expressed on myeloid cells 1
Tssr145069 17 48233866 to 48233886 20 + TSS region transcription start site region 145069
Tssr148521 17 48234738 to 48234751 13 - TSS region transcription start site region 148521
Tssr148522 17 48234753 to 48234766 13 - TSS region transcription start site region 148522
Tssr5151 17 48234861 to 48234871 10 + TSS region transcription start site region 5151
Gm18679 17 48238208 to 48239446 1238 - pseudogene predicted gene, 18679
Tssr145070 17 48247712 to 48247741 29 + TSS region transcription start site region 145070
Tssr145071 17 48247744 to 48247751 7 + TSS region transcription start site region 145071
Tssr145072 17 48247759 to 48247782 23 + TSS region transcription start site region 145072
Trem3 17 48247777 to 48258841 11064 + protein coding gene triggering receptor expressed on myeloid cells 3
Tssr145073 17 48247783 to 48247810 27 + TSS region transcription start site region 145073
Tssr145074 17 48247815 to 48247832 17 + TSS region transcription start site region 145074
Tssr145075 17 48247845 to 48247855 10 + TSS region transcription start site region 145075
Tssr145076 17 48264270 to 48264312 42 + TSS region transcription start site region 145076
Treml4 17 48264295 to 48275360 11065 + protein coding gene triggering receptor expressed on myeloid cells-like 4
Tssr145077 17 48299487 to 48299501 14 + TSS region transcription start site region 145077
Treml2 17 48299498 to 48312533 13035 + protein coding gene triggering receptor expressed on myeloid cells-like 2
Tssr145078 17 48299921 to 48299941 20 + TSS region transcription start site region 145078
Tssr145079 17 48299952 to 48299965 13 + TSS region transcription start site region 145079
Tssr145080 17 48300334 to 48300343 9 + TSS region transcription start site region 145080
Tssr145081 17 48300344 to 48300375 31 + TSS region transcription start site region 145081
Tssr145082 17 48300378 to 48300396 18 + TSS region transcription start site region 145082
Tssr145083 17 48300401 to 48300436 35 + TSS region transcription start site region 145083
Tssr145084 17 48300448 to 48300458 10 + TSS region transcription start site region 145084
Tssr145085 17 48300472 to 48300479 7 + TSS region transcription start site region 145085
Tssr145086 17 48300499 to 48300524 25 + TSS region transcription start site region 145086
Tssr148523 17 48300909 to 48300923 14 - TSS region transcription start site region 148523
Tssr5152 17 48314681 to 48314684 3 + TSS region transcription start site region 5152
Tssr145087 17 48316129 to 48316146 17 + TSS region transcription start site region 145087
B430306N03Rik 17 48316141 to 48327024 10883 + protein coding gene RIKEN cDNA B430306N03 gene
Tssr145088 17 48316156 to 48316168 12 + TSS region transcription start site region 145088
Tssr145089 17 48316191 to 48316213 22 + TSS region transcription start site region 145089
Tssr145090 17 48316216 to 48316232 16 + TSS region transcription start site region 145090
Tssr145091 17 48319229 to 48319241 12 + TSS region transcription start site region 145091
Tssr145092 17 48324215 to 48324223 8 + TSS region transcription start site region 145092
Tssr148524 17 48324368 to 48324386 18 - TSS region transcription start site region 148524
Trem2 17 48346401 to 48352276 5875 + protein coding gene triggering receptor expressed on myeloid cells 2
Tssr145093 17 48346406 to 48346417 11 + TSS region transcription start site region 145093
Tssr145094 17 48346433 to 48346445 12 + TSS region transcription start site region 145094
Tssr145095 17 48346465 to 48346493 28 + TSS region transcription start site region 145095
Tssr145096 17 48346498 to 48346526 28 + TSS region transcription start site region 145096
Tssr145097 17 48347501 to 48347531 30 + TSS region transcription start site region 145097
Tssr145098 17 48347828 to 48347873 45 + TSS region transcription start site region 145098
Tssr145099 17 48348480 to 48348499 19 + TSS region transcription start site region 145099
Tssr145100 17 48348509 to 48348525 16 + TSS region transcription start site region 145100
Tssr145101 17 48348546 to 48348566 20 + TSS region transcription start site region 145101
Tssr145102 17 48348645 to 48348680 35 + TSS region transcription start site region 145102
Tssr148525 17 48348690 to 48348736 46 - TSS region transcription start site region 148525
Tssr145103 17 48351136 to 48351170 34 + TSS region transcription start site region 145103
Tssr145104 17 48351704 to 48351720 16 + TSS region transcription start site region 145104
Tssr145105 17 48351741 to 48351785 44 + TSS region transcription start site region 145105
Tssr148526 17 48351757 to 48351786 29 - TSS region transcription start site region 148526
Tssr145106 17 48351834 to 48351846 12 + TSS region transcription start site region 145106
Tssr145107 17 48351849 to 48351872 23 + TSS region transcription start site region 145107
Tssr145108 17 48352025 to 48352105 80 + TSS region transcription start site region 145108
Tssr148527 17 48352265 to 48352272 7 - TSS region transcription start site region 148527
Tssr145109 17 48359891 to 48359926 35 + TSS region transcription start site region 145109
Treml1 17 48359916 to 48367176 7260 + protein coding gene triggering receptor expressed on myeloid cells-like 1
Nfya 17 48386885 to 48409901 23016 - protein coding gene nuclear transcription factor-Y alpha
Tssr148528 17 48387966 to 48387992 26 - TSS region transcription start site region 148528
Tssr148529 17 48387996 to 48388017 21 - TSS region transcription start site region 148529
Tssr148530 17 48388148 to 48388162 14 - TSS region transcription start site region 148530
Tssr148531 17 48388393 to 48388404 11 - TSS region transcription start site region 148531
Tssr148532 17 48388596 to 48388609 13 - TSS region transcription start site region 148532
Cpgi9291 17 48408931 to 48410448 1517 CpG island CpG island 9291
Tssr148533 17 48408985 to 48408996 11 - TSS region transcription start site region 148533
Tssr148534 17 48409010 to 48409027 17 - TSS region transcription start site region 148534
Tssr145110 17 48409173 to 48409178 5 + TSS region transcription start site region 145110
Tssr148535 17 48409477 to 48409525 48 - TSS region transcription start site region 148535
Tssr148536 17 48409588 to 48409599 11 - TSS region transcription start site region 148536
Tssr148537 17 48409729 to 48409766 37 - TSS region transcription start site region 148537
Tssr145111 17 48409980 to 48410104 124 + TSS region transcription start site region 145111
Oard1 17 48410014 to 48417266 7252 + protein coding gene O-acyl-ADP-ribose deacylase 1
Tssr145112 17 48410148 to 48410162 14 + TSS region transcription start site region 145112
Tssr145113 17 48410182 to 48410202 20 + TSS region transcription start site region 145113
Tssr145114 17 48410206 to 48410262 56 + TSS region transcription start site region 145114
Tssr145115 17 48410269 to 48410288 19 + TSS region transcription start site region 145115
Tssr145116 17 48410477 to 48410490 13 + TSS region transcription start site region 145116
Tssr145117 17 48411787 to 48411792 5 + TSS region transcription start site region 145117
Gm49893 17 48417280 to 48421634 4354 + antisense lncRNA gene predicted gene, 49893
Tssr148538 17 48418176 to 48418179 3 - TSS region transcription start site region 148538
Apobec2 17 48419231 to 48432728 13497 - protein coding gene apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2
Gm30283 17 48423462 to 48425554 2092 + lncRNA gene predicted gene, 30283
Tssr148539 17 48432608 to 48432627 19 - TSS region transcription start site region 148539
Tssr148540 17 48432723 to 48432741 18 - TSS region transcription start site region 148540
Tssr148541 17 48432846 to 48432854 8 - TSS region transcription start site region 148541
Cpgi9292 17 48433084 to 48433291 207 CpG island CpG island 9292