Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:47946306-48346311

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38637 17 47924770 to 47946470 21700 + lncRNA gene predicted gene, 38637
Gm29938 17 47950119 to 47977285 27166 - lncRNA gene predicted gene, 29938
Cpgi9283 17 47973421 to 47975009 1588 CpG island CpG island 9283
Cpgi9284 17 47975208 to 47975696 488 CpG island CpG island 9284
Cpgi9285 17 47976233 to 47976397 164 CpG island CpG island 9285
Gm41591 17 47985325 to 47990358 5033 - lncRNA gene predicted gene, 41591
Gm14871 17 48003379 to 48003572 193 - pseudogene predicted gene 14871
Cpgi9286 17 48031309 to 48032054 745 CpG island CpG island 9286
1700122O11Rik 17 48036745 to 48038293 1548 - protein coding gene RIKEN cDNA 1700122O11 gene
Tssr148513 17 48038286 to 48038306 20 - TSS region transcription start site region 148513
Cpgi9287 17 48041932 to 48042311 379 CpG island CpG island 9287
Gm20596 17 48055995 to 48056147 152 - pseudogene predicted gene, 20596
A730006G06Rik 17 48064789 to 48090378 25589 - antisense lncRNA gene RIKEN cDNA A730006G06 gene
Tssr145063 17 48065301 to 48065307 6 + TSS region transcription start site region 145063
Gm30068 17 48067365 to 48086033 18668 + lncRNA gene predicted gene, 30068
1700067P10Rik 17 48089632 to 48090920 1288 + lncRNA gene RIKEN cDNA 1700067P10 gene
Tssr145064 17 48089634 to 48089659 25 + TSS region transcription start site region 145064
Tssr145065 17 48089660 to 48089686 26 + TSS region transcription start site region 145065
Gm49946 17 48092779 to 48095632 2853 + lincRNA gene predicted gene, 49946
Cpgi9288 17 48095718 to 48095996 278 CpG island CpG island 9288
Cpgi9289 17 48096349 to 48098225 1876 CpG island CpG island 9289
Cpgi9290 17 48098590 to 48098864 274 CpG island CpG island 9290
9830107B12Rik 17 48125605 to 48146268 20663 - protein coding gene RIKEN cDNA 9830107B12 gene
Gm49947 17 48141724 to 48141903 179 - pseudogene predicted gene, 49947
Tssr148514 17 48146198 to 48146209 11 - TSS region transcription start site region 148514
Tssr148515 17 48146223 to 48146232 9 - TSS region transcription start site region 148515
Tssr148516 17 48146234 to 48146294 60 - TSS region transcription start site region 148516
Tssr148517 17 48146306 to 48146311 5 - TSS region transcription start site region 148517
Tssr145066 17 48146379 to 48146387 8 + TSS region transcription start site region 145066
A530064D06Rik 17 48151896 to 48167257 15361 - protein coding gene RIKEN cDNA A530064D06 gene
Tssr148518 17 48167187 to 48167218 31 - TSS region transcription start site region 148518
Tssr148519 17 48167265 to 48167286 21 - TSS region transcription start site region 148519
Tssr145067 17 48185581 to 48185588 7 + TSS region transcription start site region 145067
Tssr148520 17 48232616 to 48232649 33 - TSS region transcription start site region 148520
Tssr145068 17 48232755 to 48232777 22 + TSS region transcription start site region 145068
Trem1 17 48232768 to 48246924 14156 + protein coding gene triggering receptor expressed on myeloid cells 1
Tssr145069 17 48233866 to 48233886 20 + TSS region transcription start site region 145069
Tssr148521 17 48234738 to 48234751 13 - TSS region transcription start site region 148521
Tssr148522 17 48234753 to 48234766 13 - TSS region transcription start site region 148522
Tssr5151 17 48234861 to 48234871 10 + TSS region transcription start site region 5151
Gm18679 17 48238208 to 48239446 1238 - pseudogene predicted gene, 18679
Tssr145070 17 48247712 to 48247741 29 + TSS region transcription start site region 145070
Tssr145071 17 48247744 to 48247751 7 + TSS region transcription start site region 145071
Tssr145072 17 48247759 to 48247782 23 + TSS region transcription start site region 145072
Trem3 17 48247777 to 48258841 11064 + protein coding gene triggering receptor expressed on myeloid cells 3
Tssr145073 17 48247783 to 48247810 27 + TSS region transcription start site region 145073
Tssr145074 17 48247815 to 48247832 17 + TSS region transcription start site region 145074
Tssr145075 17 48247845 to 48247855 10 + TSS region transcription start site region 145075
Tssr145076 17 48264270 to 48264312 42 + TSS region transcription start site region 145076
Treml4 17 48264295 to 48275360 11065 + protein coding gene triggering receptor expressed on myeloid cells-like 4
Tssr145077 17 48299487 to 48299501 14 + TSS region transcription start site region 145077
Treml2 17 48299498 to 48312533 13035 + protein coding gene triggering receptor expressed on myeloid cells-like 2
Tssr145078 17 48299921 to 48299941 20 + TSS region transcription start site region 145078
Tssr145079 17 48299952 to 48299965 13 + TSS region transcription start site region 145079
Tssr145080 17 48300334 to 48300343 9 + TSS region transcription start site region 145080
Tssr145081 17 48300344 to 48300375 31 + TSS region transcription start site region 145081
Tssr145082 17 48300378 to 48300396 18 + TSS region transcription start site region 145082
Tssr145083 17 48300401 to 48300436 35 + TSS region transcription start site region 145083
Tssr145084 17 48300448 to 48300458 10 + TSS region transcription start site region 145084
Tssr145085 17 48300472 to 48300479 7 + TSS region transcription start site region 145085
Tssr145086 17 48300499 to 48300524 25 + TSS region transcription start site region 145086
Tssr148523 17 48300909 to 48300923 14 - TSS region transcription start site region 148523
Tssr5152 17 48314681 to 48314684 3 + TSS region transcription start site region 5152
Tssr145087 17 48316129 to 48316146 17 + TSS region transcription start site region 145087
B430306N03Rik 17 48316141 to 48327024 10883 + protein coding gene RIKEN cDNA B430306N03 gene
Tssr145088 17 48316156 to 48316168 12 + TSS region transcription start site region 145088
Tssr145089 17 48316191 to 48316213 22 + TSS region transcription start site region 145089
Tssr145090 17 48316216 to 48316232 16 + TSS region transcription start site region 145090
Tssr145091 17 48319229 to 48319241 12 + TSS region transcription start site region 145091
Tssr145092 17 48324215 to 48324223 8 + TSS region transcription start site region 145092
Tssr148524 17 48324368 to 48324386 18 - TSS region transcription start site region 148524