Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:47748036-48098416

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tfeb 17 47737037 to 47792416 55379 + protein coding gene transcription factor EB
Tssr145053 17 47749099 to 47749114 15 + TSS region transcription start site region 145053
Tssr148485 17 47754233 to 47754245 12 - TSS region transcription start site region 148485
Tssr145054 17 47759241 to 47759245 4 + TSS region transcription start site region 145054
Tssr145055 17 47761443 to 47761457 14 + TSS region transcription start site region 145055
Tssr145056 17 47761510 to 47761538 28 + TSS region transcription start site region 145056
Tssr145057 17 47767320 to 47767355 35 + TSS region transcription start site region 145057
Tssr148486 17 47768761 to 47768788 27 - TSS region transcription start site region 148486
Tssr145058 17 47768935 to 47768986 51 + TSS region transcription start site region 145058
Tssr145059 17 47769191 to 47769201 10 + TSS region transcription start site region 145059
Tssr145060 17 47785703 to 47785720 17 + TSS region transcription start site region 145060
Tssr145061 17 47785729 to 47785739 10 + TSS region transcription start site region 145061
Mdfi 17 47815328 to 47834691 19363 - protein coding gene MyoD family inhibitor
Cpgi9272 17 47815734 to 47816079 345 CpG island CpG island 9272
Cpgi9273 17 47820585 to 47820937 352 CpG island CpG island 9273
Cpgi9274 17 47832829 to 47833779 950 CpG island CpG island 9274
Tssr148487 17 47833225 to 47833254 29 - TSS region transcription start site region 148487
Tssr148488 17 47833256 to 47833279 23 - TSS region transcription start site region 148488
Cpgi9275 17 47834177 to 47834672 495 CpG island CpG island 9275
Tssr148489 17 47834434 to 47834447 13 - TSS region transcription start site region 148489
Tssr148490 17 47834483 to 47834513 30 - TSS region transcription start site region 148490
Tssr148491 17 47834521 to 47834534 13 - TSS region transcription start site region 148491
Tssr148492 17 47834541 to 47834556 15 - TSS region transcription start site region 148492
Tssr148493 17 47834682 to 47834690 8 - TSS region transcription start site region 148493
Gm25201 17 47840816 to 47840985 169 - snRNA gene predicted gene, 25201
n-R5s28 17 47848834 to 47848952 118 + rRNA gene nuclear encoded rRNA 5S 28
D17Mit37 17 47852590 to 47852717 127 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 37
D17Mit202 17 47855482 to 47855573 91 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 202
Tssr145062 17 47862275 to 47862287 12 + TSS region transcription start site region 145062
Cpgi9276 17 47864593 to 47864902 309 CpG island CpG island 9276
Foxp4 17 47867133 to 47924643 57510 - protein coding gene forkhead box P4
Tssr148494 17 47867843 to 47867862 19 - TSS region transcription start site region 148494
Tssr148495 17 47868414 to 47868442 28 - TSS region transcription start site region 148495
Cpgi9277 17 47878410 to 47879097 687 CpG island CpG island 9277
Tssr148496 17 47878511 to 47878528 17 - TSS region transcription start site region 148496
Tssr148497 17 47878696 to 47878740 44 - TSS region transcription start site region 148497
Tssr148498 17 47878875 to 47878887 12 - TSS region transcription start site region 148498
Tssr148499 17 47878890 to 47878966 76 - TSS region transcription start site region 148499
Tssr148500 17 47878976 to 47878985 9 - TSS region transcription start site region 148500
Tssr148501 17 47879046 to 47879088 42 - TSS region transcription start site region 148501
Tssr148502 17 47888168 to 47888173 5 - TSS region transcription start site region 148502
Tssr148503 17 47888182 to 47888189 7 - TSS region transcription start site region 148503
Tssr148504 17 47888190 to 47888217 27 - TSS region transcription start site region 148504
Tssr148505 17 47888223 to 47888234 11 - TSS region transcription start site region 148505
Cpgi9278 17 47904252 to 47904559 307 CpG island CpG island 9278
Cpgi9279 17 47909271 to 47909847 576 CpG island CpG island 9279
Tssr148506 17 47914207 to 47914211 4 - TSS region transcription start site region 148506
Cpgi9280 17 47922245 to 47922773 528 CpG island CpG island 9280
Gm15556 17 47922378 to 47923429 1051 + antisense lncRNA gene predicted gene 15556
Cpgi9281 17 47923036 to 47923416 380 CpG island CpG island 9281
Cpgi9282 17 47923766 to 47925505 1739 CpG island CpG island 9282
Tssr148507 17 47924432 to 47924450 18 - TSS region transcription start site region 148507
Tssr148508 17 47924460 to 47924482 22 - TSS region transcription start site region 148508
Tssr148509 17 47924635 to 47924652 17 - TSS region transcription start site region 148509
Tssr148510 17 47924656 to 47924680 24 - TSS region transcription start site region 148510
Tssr148511 17 47924682 to 47924699 17 - TSS region transcription start site region 148511
Tssr148512 17 47924743 to 47924774 31 - TSS region transcription start site region 148512
Gm38637 17 47924770 to 47946470 21700 + lncRNA gene predicted gene, 38637
Gm46601 17 47925124 to 47928253 3129 - lncRNA gene predicted gene, 46601
Gm5228 17 47936090 to 47936446 356 + pseudogene predicted gene 5228
Tssr5150 17 47938251 to 47938252 1 - TSS region transcription start site region 5150
Gm29938 17 47950119 to 47977285 27166 - lncRNA gene predicted gene, 29938
Cpgi9283 17 47973421 to 47975009 1588 CpG island CpG island 9283
Cpgi9284 17 47975208 to 47975696 488 CpG island CpG island 9284
Cpgi9285 17 47976233 to 47976397 164 CpG island CpG island 9285
Gm41591 17 47985325 to 47990358 5033 - lncRNA gene predicted gene, 41591
Gm14871 17 48003379 to 48003572 193 - pseudogene predicted gene 14871
Cpgi9286 17 48031309 to 48032054 745 CpG island CpG island 9286
1700122O11Rik 17 48036745 to 48038293 1548 - protein coding gene RIKEN cDNA 1700122O11 gene
Tssr148513 17 48038286 to 48038306 20 - TSS region transcription start site region 148513
Cpgi9287 17 48041932 to 48042311 379 CpG island CpG island 9287
Gm20596 17 48055995 to 48056147 152 - pseudogene predicted gene, 20596
A730006G06Rik 17 48064789 to 48090378 25589 - antisense lncRNA gene RIKEN cDNA A730006G06 gene
Tssr145063 17 48065301 to 48065307 6 + TSS region transcription start site region 145063
Gm30068 17 48067365 to 48086033 18668 + lncRNA gene predicted gene, 30068
1700067P10Rik 17 48089632 to 48090920 1288 + lncRNA gene RIKEN cDNA 1700067P10 gene
Tssr145064 17 48089634 to 48089659 25 + TSS region transcription start site region 145064
Tssr145065 17 48089660 to 48089686 26 + TSS region transcription start site region 145065
Gm49946 17 48092779 to 48095632 2853 + lincRNA gene predicted gene, 49946
Cpgi9288 17 48095718 to 48095996 278 CpG island CpG island 9288
Cpgi9289 17 48096349 to 48098225 1876 CpG island CpG island 9289