Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:47640995-48471147

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313 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mrdq1 17 30768929 to 47728778 16959849 QTL modifier of retinal degeneration QTL 1
repro17 17 31842678 to 47722705 15880027 heritable phenotypic marker reproductive mutant 17, JAX Reproductive Mutagenesis Program
Gm20517 17 47611589 to 47683861 72272 + protein coding gene predicted gene 20517
Usp49 17 47630690 to 47684067 53377 + protein coding gene ubiquitin specific peptidase 49
Tssr144992 17 47655807 to 47655809 2 + TSS region transcription start site region 144992
Tssr144993 17 47658009 to 47658014 5 + TSS region transcription start site region 144993
Tssr144994 17 47662988 to 47662991 3 + TSS region transcription start site region 144994
Tssr144995 17 47668759 to 47668792 33 + TSS region transcription start site region 144995
Tssr148451 17 47670689 to 47670701 12 - TSS region transcription start site region 148451
Cpgi9267 17 47672055 to 47673301 1246 CpG island CpG island 9267
Tssr144996 17 47672668 to 47672680 12 + TSS region transcription start site region 144996
Tomm6 17 47686646 to 47688386 1740 - protein coding gene translocase of outer mitochondrial membrane 6
Gm21981 17 47686739 to 47694455 7716 - protein coding gene predicted gene 21981
Tssr148452 17 47687006 to 47687022 16 - TSS region transcription start site region 148452
Cpgi9268 17 47687486 to 47689511 2025 CpG island CpG island 9268
Tomm6os 17 47687610 to 47691083 3473 + antisense lncRNA gene translocase of outer mitochondrial membrane 6, opposite strand
Tssr5146 17 47687994 to 47688001 7 - TSS region transcription start site region 5146
Tssr148453 17 47688028 to 47688101 73 - TSS region transcription start site region 148453
Prickle4 17 47688517 to 47694736 6219 - protein coding gene prickle planar cell polarity protein 4
Tssr148454 17 47688880 to 47688925 45 - TSS region transcription start site region 148454
Tssr144997 17 47688959 to 47688970 11 + TSS region transcription start site region 144997
Tssr144998 17 47688992 to 47689007 15 + TSS region transcription start site region 144998
Frs3 17 47689030 to 47704286 15256 + protein coding gene fibroblast growth factor receptor substrate 3
Tssr148455 17 47690892 to 47690897 5 - TSS region transcription start site region 148455
Cpgi9269 17 47694488 to 47695712 1224 CpG island CpG island 9269
Tssr148456 17 47694733 to 47694755 22 - TSS region transcription start site region 148456
Tssr144999 17 47695171 to 47695204 33 + TSS region transcription start site region 144999
Frs3os 17 47699971 to 47701996 2025 - antisense lncRNA gene fibroblast growth factor receptor substrate 3, opposite strand
Tssr148457 17 47701973 to 47702008 35 - TSS region transcription start site region 148457
Tssr145000 17 47702895 to 47702908 13 + TSS region transcription start site region 145000
Tssr145001 17 47703169 to 47703182 13 + TSS region transcription start site region 145001
Tssr145002 17 47703206 to 47703247 41 + TSS region transcription start site region 145002
Gm46579 17 47711614 to 47712530 916 + lncRNA gene predicted gene, 46579
Tssr148458 17 47713340 to 47713351 11 - TSS region transcription start site region 148458
Plgr1 17 47722575 to 47722705 130 QTL plague resistance locus 1
D17Mit66 17 47722575 to 47722705 130 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 66
D17Dcr12 17 47722588 to 47722704 116 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 12
Tssr145003 17 47726834 to 47726848 14 + TSS region transcription start site region 145003
Pgc 17 47726842 to 47734478 7636 + protein coding gene progastricsin (pepsinogen C)
D17Mit201 17 47727211 to 47727335 124 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 201
Tssr145004 17 47728732 to 47728742 10 + TSS region transcription start site region 145004
Tssr5147 17 47728750 to 47728751 1 + TSS region transcription start site region 5147
Tssr145005 17 47728760 to 47728763 3 + TSS region transcription start site region 145005
Tssr145006 17 47728769 to 47728792 23 + TSS region transcription start site region 145006
Tssr145007 17 47728796 to 47728824 28 + TSS region transcription start site region 145007
Tssr148459 17 47728796 to 47728801 5 - TSS region transcription start site region 148459
Tssr148460 17 47728817 to 47728853 36 - TSS region transcription start site region 148460
Tssr145008 17 47728830 to 47728845 15 + TSS region transcription start site region 145008
Tssr145009 17 47728847 to 47728873 26 + TSS region transcription start site region 145009
Tssr148461 17 47728856 to 47728865 9 - TSS region transcription start site region 148461
Tssr148462 17 47728875 to 47728908 33 - TSS region transcription start site region 148462
Tssr145010 17 47729250 to 47729255 5 + TSS region transcription start site region 145010
Tssr145011 17 47729263 to 47729274 11 + TSS region transcription start site region 145011
Tssr145012 17 47729275 to 47729291 16 + TSS region transcription start site region 145012
Tssr148463 17 47729278 to 47729281 3 - TSS region transcription start site region 148463
Tssr145013 17 47729294 to 47729343 49 + TSS region transcription start site region 145013
Tssr5148 17 47729310 to 47729313 3 - TSS region transcription start site region 5148
Tssr148464 17 47729356 to 47729366 10 - TSS region transcription start site region 148464
Tssr145014 17 47730080 to 47730137 57 + TSS region transcription start site region 145014
Tssr148465 17 47730121 to 47730127 6 - TSS region transcription start site region 148465
Tssr148466 17 47730134 to 47730161 27 - TSS region transcription start site region 148466
Tssr145015 17 47730142 to 47730152 10 + TSS region transcription start site region 145015
Tssr145016 17 47730153 to 47730156 3 + TSS region transcription start site region 145016
Tssr145017 17 47730598 to 47730605 7 + TSS region transcription start site region 145017
Tssr145018 17 47730610 to 47730611 1 + TSS region transcription start site region 145018
Tssr148467 17 47730629 to 47730632 3 - TSS region transcription start site region 148467
Tssr145019 17 47730641 to 47730642 1 + TSS region transcription start site region 145019
Tssr148468 17 47730660 to 47730669 9 - TSS region transcription start site region 148468
Tssr145020 17 47730662 to 47730671 9 + TSS region transcription start site region 145020
Tssr145021 17 47730688 to 47730701 13 + TSS region transcription start site region 145021
Tssr145022 17 47730720 to 47730728 8 + TSS region transcription start site region 145022
Tssr145023 17 47730747 to 47730766 19 + TSS region transcription start site region 145023
Tssr148469 17 47730750 to 47730763 13 - TSS region transcription start site region 148469
Tssr145024 17 47730858 to 47730868 10 + TSS region transcription start site region 145024
Tssr145025 17 47731202 to 47731231 29 + TSS region transcription start site region 145025
Tssr145026 17 47731458 to 47731471 13 + TSS region transcription start site region 145026
Tssr5149 17 47731483 to 47731488 5 + TSS region transcription start site region 5149
Tssr145027 17 47732391 to 47732412 21 + TSS region transcription start site region 145027
Tssr145028 17 47732419 to 47732453 34 + TSS region transcription start site region 145028
Tssr148470 17 47732427 to 47732438 11 - TSS region transcription start site region 148470
Tssr148471 17 47732446 to 47732460 14 - TSS region transcription start site region 148471
Tssr145029 17 47732460 to 47732470 10 + TSS region transcription start site region 145029
Tssr148472 17 47732462 to 47732474 12 - TSS region transcription start site region 148472
Tssr148473 17 47732479 to 47732488 9 - TSS region transcription start site region 148473
Tssr148474 17 47732498 to 47732506 8 - TSS region transcription start site region 148474
Tssr145030 17 47732954 to 47732965 11 + TSS region transcription start site region 145030
Tssr145031 17 47732970 to 47732973 3 + TSS region transcription start site region 145031
Tssr145032 17 47732978 to 47733058 80 + TSS region transcription start site region 145032
Tssr148475 17 47733027 to 47733050 23 - TSS region transcription start site region 148475
Tssr148476 17 47733055 to 47733077 22 - TSS region transcription start site region 148476
Tssr145033 17 47733059 to 47733060 1 + TSS region transcription start site region 145033
Tssr145034 17 47733061 to 47733071 10 + TSS region transcription start site region 145034
Tssr148477 17 47733086 to 47733110 24 - TSS region transcription start site region 148477
Tssr145035 17 47733751 to 47733755 4 + TSS region transcription start site region 145035
Tssr145036 17 47733759 to 47733784 25 + TSS region transcription start site region 145036
Tssr148478 17 47733798 to 47733810 12 - TSS region transcription start site region 148478
Tssr145037 17 47733803 to 47733811 8 + TSS region transcription start site region 145037
Tssr145038 17 47733813 to 47733830 17 + TSS region transcription start site region 145038
Tssr148479 17 47733836 to 47733862 26 - TSS region transcription start site region 148479
Tssr145039 17 47734178 to 47734201 23 + TSS region transcription start site region 145039
Tssr145040 17 47734202 to 47734235 33 + TSS region transcription start site region 145040
Tssr145041 17 47734239 to 47734247 8 + TSS region transcription start site region 145041
Tssr145042 17 47734257 to 47734298 41 + TSS region transcription start site region 145042
Tssr145043 17 47734312 to 47734324 12 + TSS region transcription start site region 145043
Tssr148480 17 47734314 to 47734328 14 - TSS region transcription start site region 148480
Tssr145044 17 47734329 to 47734337 8 + TSS region transcription start site region 145044
Tssr145045 17 47734339 to 47734354 15 + TSS region transcription start site region 145045
Tssr148481 17 47734344 to 47734364 20 - TSS region transcription start site region 148481
Tssr145046 17 47734358 to 47734405 47 + TSS region transcription start site region 145046
Tssr145047 17 47734406 to 47734421 15 + TSS region transcription start site region 145047
Tssr145048 17 47734438 to 47734441 3 + TSS region transcription start site region 145048
Tssr148482 17 47734475 to 47734481 6 - TSS region transcription start site region 148482
Cpgi9270 17 47736887 to 47738937 2050 CpG island CpG island 9270
Tssr145049 17 47737036 to 47737107 71 + TSS region transcription start site region 145049
Tfeb 17 47737037 to 47792416 55379 + protein coding gene transcription factor EB
Tssr145050 17 47737125 to 47737149 24 + TSS region transcription start site region 145050
Tssr145051 17 47737174 to 47737207 33 + TSS region transcription start site region 145051
Tssr148483 17 47737777 to 47737797 20 - TSS region transcription start site region 148483
Tssr145052 17 47738145 to 47738189 44 + TSS region transcription start site region 145052
Tssr148484 17 47739355 to 47739364 9 - TSS region transcription start site region 148484
Cpgi9271 17 47744357 to 47744630 273 CpG island CpG island 9271
Tssr145053 17 47749099 to 47749114 15 + TSS region transcription start site region 145053
Tssr148485 17 47754233 to 47754245 12 - TSS region transcription start site region 148485
Tssr145054 17 47759241 to 47759245 4 + TSS region transcription start site region 145054
Tssr145055 17 47761443 to 47761457 14 + TSS region transcription start site region 145055
Tssr145056 17 47761510 to 47761538 28 + TSS region transcription start site region 145056
Tssr145057 17 47767320 to 47767355 35 + TSS region transcription start site region 145057
Tssr148486 17 47768761 to 47768788 27 - TSS region transcription start site region 148486
Tssr145058 17 47768935 to 47768986 51 + TSS region transcription start site region 145058
Tssr145059 17 47769191 to 47769201 10 + TSS region transcription start site region 145059
Tssr145060 17 47785703 to 47785720 17 + TSS region transcription start site region 145060
Tssr145061 17 47785729 to 47785739 10 + TSS region transcription start site region 145061
Mdfi 17 47815328 to 47834691 19363 - protein coding gene MyoD family inhibitor
Cpgi9272 17 47815734 to 47816079 345 CpG island CpG island 9272
Cpgi9273 17 47820585 to 47820937 352 CpG island CpG island 9273
Cpgi9274 17 47832829 to 47833779 950 CpG island CpG island 9274
Tssr148487 17 47833225 to 47833254 29 - TSS region transcription start site region 148487
Tssr148488 17 47833256 to 47833279 23 - TSS region transcription start site region 148488
Cpgi9275 17 47834177 to 47834672 495 CpG island CpG island 9275
Tssr148489 17 47834434 to 47834447 13 - TSS region transcription start site region 148489
Tssr148490 17 47834483 to 47834513 30 - TSS region transcription start site region 148490
Tssr148491 17 47834521 to 47834534 13 - TSS region transcription start site region 148491
Tssr148492 17 47834541 to 47834556 15 - TSS region transcription start site region 148492
Tssr148493 17 47834682 to 47834690 8 - TSS region transcription start site region 148493
Gm25201 17 47840816 to 47840985 169 - snRNA gene predicted gene, 25201
n-R5s28 17 47848834 to 47848952 118 + rRNA gene nuclear encoded rRNA 5S 28
D17Mit37 17 47852590 to 47852717 127 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 37
D17Mit202 17 47855482 to 47855573 91 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 202
Tssr145062 17 47862275 to 47862287 12 + TSS region transcription start site region 145062
Cpgi9276 17 47864593 to 47864902 309 CpG island CpG island 9276
Foxp4 17 47867133 to 47924643 57510 - protein coding gene forkhead box P4
Tssr148494 17 47867843 to 47867862 19 - TSS region transcription start site region 148494
Tssr148495 17 47868414 to 47868442 28 - TSS region transcription start site region 148495
Cpgi9277 17 47878410 to 47879097 687 CpG island CpG island 9277
Tssr148496 17 47878511 to 47878528 17 - TSS region transcription start site region 148496
Tssr148497 17 47878696 to 47878740 44 - TSS region transcription start site region 148497
Tssr148498 17 47878875 to 47878887 12 - TSS region transcription start site region 148498
Tssr148499 17 47878890 to 47878966 76 - TSS region transcription start site region 148499
Tssr148500 17 47878976 to 47878985 9 - TSS region transcription start site region 148500
Tssr148501 17 47879046 to 47879088 42 - TSS region transcription start site region 148501
Tssr148502 17 47888168 to 47888173 5 - TSS region transcription start site region 148502
Tssr148503 17 47888182 to 47888189 7 - TSS region transcription start site region 148503
Tssr148504 17 47888190 to 47888217 27 - TSS region transcription start site region 148504
Tssr148505 17 47888223 to 47888234 11 - TSS region transcription start site region 148505
Cpgi9278 17 47904252 to 47904559 307 CpG island CpG island 9278
Cpgi9279 17 47909271 to 47909847 576 CpG island CpG island 9279
Tssr148506 17 47914207 to 47914211 4 - TSS region transcription start site region 148506
Cpgi9280 17 47922245 to 47922773 528 CpG island CpG island 9280
Gm15556 17 47922378 to 47923429 1051 + antisense lncRNA gene predicted gene 15556
Cpgi9281 17 47923036 to 47923416 380 CpG island CpG island 9281
Cpgi9282 17 47923766 to 47925505 1739 CpG island CpG island 9282
Tssr148507 17 47924432 to 47924450 18 - TSS region transcription start site region 148507
Tssr148508 17 47924460 to 47924482 22 - TSS region transcription start site region 148508
Tssr148509 17 47924635 to 47924652 17 - TSS region transcription start site region 148509
Tssr148510 17 47924656 to 47924680 24 - TSS region transcription start site region 148510
Tssr148511 17 47924682 to 47924699 17 - TSS region transcription start site region 148511
Tssr148512 17 47924743 to 47924774 31 - TSS region transcription start site region 148512
Gm38637 17 47924770 to 47946470 21700 + lncRNA gene predicted gene, 38637
Gm46601 17 47925124 to 47928253 3129 - lncRNA gene predicted gene, 46601
Gm5228 17 47936090 to 47936446 356 + pseudogene predicted gene 5228
Tssr5150 17 47938251 to 47938252 1 - TSS region transcription start site region 5150
Gm29938 17 47950119 to 47977285 27166 - lncRNA gene predicted gene, 29938
Cpgi9283 17 47973421 to 47975009 1588 CpG island CpG island 9283
Cpgi9284 17 47975208 to 47975696 488 CpG island CpG island 9284
Cpgi9285 17 47976233 to 47976397 164 CpG island CpG island 9285
Gm41591 17 47985325 to 47990358 5033 - lncRNA gene predicted gene, 41591
Gm14871 17 48003379 to 48003572 193 - pseudogene predicted gene 14871
Cpgi9286 17 48031309 to 48032054 745 CpG island CpG island 9286
1700122O11Rik 17 48036745 to 48038293 1548 - protein coding gene RIKEN cDNA 1700122O11 gene
Tssr148513 17 48038286 to 48038306 20 - TSS region transcription start site region 148513
Cpgi9287 17 48041932 to 48042311 379 CpG island CpG island 9287
Gm20596 17 48055995 to 48056147 152 - pseudogene predicted gene, 20596
A730006G06Rik 17 48064789 to 48090378 25589 - antisense lncRNA gene RIKEN cDNA A730006G06 gene
Tssr145063 17 48065301 to 48065307 6 + TSS region transcription start site region 145063
Gm30068 17 48067365 to 48086033 18668 + lncRNA gene predicted gene, 30068
1700067P10Rik 17 48089632 to 48090920 1288 + lncRNA gene RIKEN cDNA 1700067P10 gene
Tssr145064 17 48089634 to 48089659 25 + TSS region transcription start site region 145064
Tssr145065 17 48089660 to 48089686 26 + TSS region transcription start site region 145065
Gm49946 17 48092779 to 48095632 2853 + lincRNA gene predicted gene, 49946
Cpgi9288 17 48095718 to 48095996 278 CpG island CpG island 9288