Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:47586589-47708861

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccnd3 17 47505051 to 47599689 94638 + protein coding gene cyclin D3
Tssr144965 17 47587267 to 47587270 3 + TSS region transcription start site region 144965
Tssr144966 17 47587585 to 47587589 4 + TSS region transcription start site region 144966
Tssr144967 17 47588546 to 47588550 4 + TSS region transcription start site region 144967
Tssr144968 17 47588868 to 47588875 7 + TSS region transcription start site region 144968
Tssr144969 17 47590553 to 47590582 29 + TSS region transcription start site region 144969
Tssr144970 17 47590707 to 47590711 4 + TSS region transcription start site region 144970
Cpgi9264 17 47593197 to 47594956 1759 CpG island CpG island 9264
Tssr144971 17 47593444 to 47593475 31 + TSS region transcription start site region 144971
Tssr144972 17 47593479 to 47593500 21 + TSS region transcription start site region 144972
Tssr144973 17 47593516 to 47593545 29 + TSS region transcription start site region 144973
Tssr144974 17 47593552 to 47593573 21 + TSS region transcription start site region 144974
Tssr144975 17 47593613 to 47593620 7 + TSS region transcription start site region 144975
Tssr144976 17 47593741 to 47593752 11 + TSS region transcription start site region 144976
Tssr144977 17 47594581 to 47594599 18 + TSS region transcription start site region 144977
Tssr144978 17 47594605 to 47594626 21 + TSS region transcription start site region 144978
Tssr144979 17 47594629 to 47594645 16 + TSS region transcription start site region 144979
Tssr148445 17 47595767 to 47595771 4 - TSS region transcription start site region 148445
Tssr144980 17 47596061 to 47596071 10 + TSS region transcription start site region 144980
Tssr144981 17 47596073 to 47596104 31 + TSS region transcription start site region 144981
Tssr144982 17 47597102 to 47597118 16 + TSS region transcription start site region 144982
Tssr144983 17 47597513 to 47597524 11 + TSS region transcription start site region 144983
Tssr144984 17 47598664 to 47598708 44 + TSS region transcription start site region 144984
Tssr144985 17 47599118 to 47599129 11 + TSS region transcription start site region 144985
Bysl 17 47599331 to 47611492 12161 - protein coding gene bystin-like
Cpgi9265 17 47610800 to 47611830 1030 CpG island CpG island 9265
Tssr148446 17 47611174 to 47611178 4 - TSS region transcription start site region 148446
Tssr148447 17 47611211 to 47611244 33 - TSS region transcription start site region 148447
Tssr5145 17 47611246 to 47611251 5 - TSS region transcription start site region 5145
Tssr148448 17 47611423 to 47611434 11 - TSS region transcription start site region 148448
Tssr148449 17 47611449 to 47611544 95 - TSS region transcription start site region 148449
Tssr144986 17 47611557 to 47611568 11 + TSS region transcription start site region 144986
Tssr144987 17 47611570 to 47611619 49 + TSS region transcription start site region 144987
Gm20517 17 47611589 to 47683861 72272 + protein coding gene predicted gene 20517
Med20 17 47611596 to 47624418 12822 + protein coding gene mediator complex subunit 20
Tssr144988 17 47611623 to 47611636 13 + TSS region transcription start site region 144988
Kpna2-ps 17 47620771 to 47622339 1568 - pseudogene Kpna2 retrotransposed pseudogene
Cpgi9266 17 47629019 to 47630625 1606 CpG island CpG island 9266
Tssr148450 17 47629110 to 47629113 3 - TSS region transcription start site region 148450
Tssr144989 17 47629786 to 47629799 13 + TSS region transcription start site region 144989
Tssr144990 17 47629890 to 47629968 78 + TSS region transcription start site region 144990
Tssr144991 17 47630520 to 47630523 3 + TSS region transcription start site region 144991
Usp49 17 47630690 to 47684067 53377 + protein coding gene ubiquitin specific peptidase 49
Tssr144992 17 47655807 to 47655809 2 + TSS region transcription start site region 144992
Tssr144993 17 47658009 to 47658014 5 + TSS region transcription start site region 144993
Tssr144994 17 47662988 to 47662991 3 + TSS region transcription start site region 144994
Tssr144995 17 47668759 to 47668792 33 + TSS region transcription start site region 144995
Tssr148451 17 47670689 to 47670701 12 - TSS region transcription start site region 148451
Cpgi9267 17 47672055 to 47673301 1246 CpG island CpG island 9267
Tssr144996 17 47672668 to 47672680 12 + TSS region transcription start site region 144996
Tomm6 17 47686646 to 47688386 1740 - protein coding gene translocase of outer mitochondrial membrane 6
Gm21981 17 47686739 to 47694455 7716 - protein coding gene predicted gene 21981
Tssr148452 17 47687006 to 47687022 16 - TSS region transcription start site region 148452
Cpgi9268 17 47687486 to 47689511 2025 CpG island CpG island 9268
Tomm6os 17 47687610 to 47691083 3473 + antisense lncRNA gene translocase of outer mitochondrial membrane 6, opposite strand
Tssr5146 17 47687994 to 47688001 7 - TSS region transcription start site region 5146
Tssr148453 17 47688028 to 47688101 73 - TSS region transcription start site region 148453
Prickle4 17 47688517 to 47694736 6219 - protein coding gene prickle planar cell polarity protein 4
Tssr148454 17 47688880 to 47688925 45 - TSS region transcription start site region 148454
Tssr144997 17 47688959 to 47688970 11 + TSS region transcription start site region 144997
Tssr144998 17 47688992 to 47689007 15 + TSS region transcription start site region 144998
Frs3 17 47689030 to 47704286 15256 + protein coding gene fibroblast growth factor receptor substrate 3
Tssr148455 17 47690892 to 47690897 5 - TSS region transcription start site region 148455
Cpgi9269 17 47694488 to 47695712 1224 CpG island CpG island 9269
Tssr148456 17 47694733 to 47694755 22 - TSS region transcription start site region 148456
Tssr144999 17 47695171 to 47695204 33 + TSS region transcription start site region 144999
Frs3os 17 47699971 to 47701996 2025 - antisense lncRNA gene fibroblast growth factor receptor substrate 3, opposite strand
Tssr148457 17 47701973 to 47702008 35 - TSS region transcription start site region 148457
Tssr145000 17 47702895 to 47702908 13 + TSS region transcription start site region 145000
Tssr145001 17 47703169 to 47703182 13 + TSS region transcription start site region 145001
Tssr145002 17 47703206 to 47703247 41 + TSS region transcription start site region 145002