Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:47540520-47720523

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccnd3 17 47505051 to 47599689 94638 + protein coding gene cyclin D3
Tssr144950 17 47540725 to 47540737 12 + TSS region transcription start site region 144950
Tssr144951 17 47540742 to 47540755 13 + TSS region transcription start site region 144951
Tssr144952 17 47540758 to 47540772 14 + TSS region transcription start site region 144952
Gm41590 17 47540824 to 47546964 6140 - lncRNA gene predicted gene, 41590
Tssr144953 17 47542530 to 47542534 4 + TSS region transcription start site region 144953
Tssr144954 17 47546396 to 47546408 12 + TSS region transcription start site region 144954
Tssr144955 17 47551160 to 47551164 4 + TSS region transcription start site region 144955
D17Mit65 17 47553192 to 47553322 130 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 65
Tssr144956 17 47557519 to 47557525 6 + TSS region transcription start site region 144956
Tssr144957 17 47557604 to 47557620 16 + TSS region transcription start site region 144957
Tssr144958 17 47557700 to 47557709 9 + TSS region transcription start site region 144958
Tssr144959 17 47557717 to 47557726 9 + TSS region transcription start site region 144959
Tssr144960 17 47557787 to 47557826 39 + TSS region transcription start site region 144960
Tssr144961 17 47557828 to 47557839 11 + TSS region transcription start site region 144961
Tssr144962 17 47557846 to 47557865 19 + TSS region transcription start site region 144962
Tssr144963 17 47557907 to 47557926 19 + TSS region transcription start site region 144963
Tssr144964 17 47558405 to 47558432 27 + TSS region transcription start site region 144964
D17Mit68 17 47570156 to 47570285 129 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 68
D17Dcr11 17 47570190 to 47570290 100 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 11
D17Mit115 17 47574619 to 47574740 121 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 115
Kdnw3 17 47574740 to 4804477 -42770263 QTL kidney weight 3
Tssr5143 17 47580717 to 47580732 15 + TSS region transcription start site region 5143
Tssr5144 17 47581142 to 47581144 2 + TSS region transcription start site region 5144
Tssr144965 17 47587267 to 47587270 3 + TSS region transcription start site region 144965
Tssr144966 17 47587585 to 47587589 4 + TSS region transcription start site region 144966
Tssr144967 17 47588546 to 47588550 4 + TSS region transcription start site region 144967
Tssr144968 17 47588868 to 47588875 7 + TSS region transcription start site region 144968
Tssr144969 17 47590553 to 47590582 29 + TSS region transcription start site region 144969
Tssr144970 17 47590707 to 47590711 4 + TSS region transcription start site region 144970
Cpgi9264 17 47593197 to 47594956 1759 CpG island CpG island 9264
Tssr144971 17 47593444 to 47593475 31 + TSS region transcription start site region 144971
Tssr144972 17 47593479 to 47593500 21 + TSS region transcription start site region 144972
Tssr144973 17 47593516 to 47593545 29 + TSS region transcription start site region 144973
Tssr144974 17 47593552 to 47593573 21 + TSS region transcription start site region 144974
Tssr144975 17 47593613 to 47593620 7 + TSS region transcription start site region 144975
Tssr144976 17 47593741 to 47593752 11 + TSS region transcription start site region 144976
Tssr144977 17 47594581 to 47594599 18 + TSS region transcription start site region 144977
Tssr144978 17 47594605 to 47594626 21 + TSS region transcription start site region 144978
Tssr144979 17 47594629 to 47594645 16 + TSS region transcription start site region 144979
Tssr148445 17 47595767 to 47595771 4 - TSS region transcription start site region 148445
Tssr144980 17 47596061 to 47596071 10 + TSS region transcription start site region 144980
Tssr144981 17 47596073 to 47596104 31 + TSS region transcription start site region 144981
Tssr144982 17 47597102 to 47597118 16 + TSS region transcription start site region 144982
Tssr144983 17 47597513 to 47597524 11 + TSS region transcription start site region 144983
Tssr144984 17 47598664 to 47598708 44 + TSS region transcription start site region 144984
Tssr144985 17 47599118 to 47599129 11 + TSS region transcription start site region 144985
Bysl 17 47599331 to 47611492 12161 - protein coding gene bystin-like
Cpgi9265 17 47610800 to 47611830 1030 CpG island CpG island 9265
Tssr148446 17 47611174 to 47611178 4 - TSS region transcription start site region 148446
Tssr148447 17 47611211 to 47611244 33 - TSS region transcription start site region 148447
Tssr5145 17 47611246 to 47611251 5 - TSS region transcription start site region 5145
Tssr148448 17 47611423 to 47611434 11 - TSS region transcription start site region 148448
Tssr148449 17 47611449 to 47611544 95 - TSS region transcription start site region 148449
Tssr144986 17 47611557 to 47611568 11 + TSS region transcription start site region 144986
Tssr144987 17 47611570 to 47611619 49 + TSS region transcription start site region 144987
Gm20517 17 47611589 to 47683861 72272 + protein coding gene predicted gene 20517
Med20 17 47611596 to 47624418 12822 + protein coding gene mediator complex subunit 20
Tssr144988 17 47611623 to 47611636 13 + TSS region transcription start site region 144988
Kpna2-ps 17 47620771 to 47622339 1568 - pseudogene Kpna2 retrotransposed pseudogene
Cpgi9266 17 47629019 to 47630625 1606 CpG island CpG island 9266
Tssr148450 17 47629110 to 47629113 3 - TSS region transcription start site region 148450
Tssr144989 17 47629786 to 47629799 13 + TSS region transcription start site region 144989
Tssr144990 17 47629890 to 47629968 78 + TSS region transcription start site region 144990
Tssr144991 17 47630520 to 47630523 3 + TSS region transcription start site region 144991
Usp49 17 47630690 to 47684067 53377 + protein coding gene ubiquitin specific peptidase 49
Tssr144992 17 47655807 to 47655809 2 + TSS region transcription start site region 144992
Tssr144993 17 47658009 to 47658014 5 + TSS region transcription start site region 144993
Tssr144994 17 47662988 to 47662991 3 + TSS region transcription start site region 144994
Tssr144995 17 47668759 to 47668792 33 + TSS region transcription start site region 144995
Tssr148451 17 47670689 to 47670701 12 - TSS region transcription start site region 148451
Cpgi9267 17 47672055 to 47673301 1246 CpG island CpG island 9267
Tssr144996 17 47672668 to 47672680 12 + TSS region transcription start site region 144996
Tomm6 17 47686646 to 47688386 1740 - protein coding gene translocase of outer mitochondrial membrane 6
Gm21981 17 47686739 to 47694455 7716 - protein coding gene predicted gene 21981
Tssr148452 17 47687006 to 47687022 16 - TSS region transcription start site region 148452
Cpgi9268 17 47687486 to 47689511 2025 CpG island CpG island 9268
Tomm6os 17 47687610 to 47691083 3473 + antisense lncRNA gene translocase of outer mitochondrial membrane 6, opposite strand
Tssr5146 17 47687994 to 47688001 7 - TSS region transcription start site region 5146
Tssr148453 17 47688028 to 47688101 73 - TSS region transcription start site region 148453
Prickle4 17 47688517 to 47694736 6219 - protein coding gene prickle planar cell polarity protein 4
Tssr148454 17 47688880 to 47688925 45 - TSS region transcription start site region 148454
Tssr144997 17 47688959 to 47688970 11 + TSS region transcription start site region 144997
Tssr144998 17 47688992 to 47689007 15 + TSS region transcription start site region 144998
Frs3 17 47689030 to 47704286 15256 + protein coding gene fibroblast growth factor receptor substrate 3
Tssr148455 17 47690892 to 47690897 5 - TSS region transcription start site region 148455
Cpgi9269 17 47694488 to 47695712 1224 CpG island CpG island 9269
Tssr148456 17 47694733 to 47694755 22 - TSS region transcription start site region 148456
Tssr144999 17 47695171 to 47695204 33 + TSS region transcription start site region 144999
Frs3os 17 47699971 to 47701996 2025 - antisense lncRNA gene fibroblast growth factor receptor substrate 3, opposite strand
Tssr148457 17 47701973 to 47702008 35 - TSS region transcription start site region 148457
Tssr145000 17 47702895 to 47702908 13 + TSS region transcription start site region 145000
Tssr145001 17 47703169 to 47703182 13 + TSS region transcription start site region 145001
Tssr145002 17 47703206 to 47703247 41 + TSS region transcription start site region 145002
Gm46579 17 47711614 to 47712530 916 + lncRNA gene predicted gene, 46579
Tssr148458 17 47713340 to 47713351 11 - TSS region transcription start site region 148458