Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:46876697-47156955

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr148412 17 46880527 to 46880532 5 - TSS region transcription start site region 148412
Cpgi9248 17 46889377 to 46891601 2224 CpG island CpG island 9248
Tssr144887 17 46890625 to 46890652 27 + TSS region transcription start site region 144887
Tssr144888 17 46890653 to 46890692 39 + TSS region transcription start site region 144888
Tbcc 17 46890684 to 46891847 1163 + protein coding gene tubulin-specific chaperone C
Tssr144889 17 46893915 to 46893921 6 + TSS region transcription start site region 144889
Tssr144890 17 46910452 to 46910464 12 + TSS region transcription start site region 144890
Tssr144891 17 46910469 to 46910487 18 + TSS region transcription start site region 144891
Prph2 17 46910485 to 46924926 14441 + protein coding gene peripherin 2
Tssr144892 17 46910488 to 46910499 11 + TSS region transcription start site region 144892
Tssr144893 17 46919848 to 46919857 9 + TSS region transcription start site region 144893
Tssr144894 17 46924622 to 46924628 6 + TSS region transcription start site region 144894
Ubr2 17 46928295 to 47010556 82261 - protein coding gene ubiquitin protein ligase E3 component n-recognin 2
Gm23657 17 46992623 to 46992916 293 - unclassified non-coding RNA gene predicted gene, 23657
Cpgi9249 17 47009745 to 47010756 1011 CpG island CpG island 9249
Tssr148413 17 47010411 to 47010430 19 - TSS region transcription start site region 148413
Tssr5138 17 47010435 to 47010458 23 - TSS region transcription start site region 5138
Tssr5139 17 47010476 to 47010493 17 - TSS region transcription start site region 5139
Tssr148414 17 47010513 to 47010568 55 - TSS region transcription start site region 148414
Tssr148415 17 47010574 to 47010592 18 - TSS region transcription start site region 148415
Gm16494 17 47016697 to 47016955 258 - pseudogene predicted gene 16494
Tssr148416 17 47017035 to 47017040 5 - TSS region transcription start site region 148416
Gm4945 17 47042587 to 47043039 452 - pseudogene predicted gene 4945
Tssr148417 17 47043057 to 47043090 33 - TSS region transcription start site region 148417
D17Mit149 17 47102682 to 47102952 270 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 149
D17Mit107 17 47102682 to 47102831 149 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 107
Cpgi9250 17 47115857 to 47116012 155 CpG island CpG island 9250
Gm41589 17 47135410 to 47140526 5116 - lncRNA gene predicted gene, 41589
Cpgi9251 17 47139019 to 47139374 355 CpG island CpG island 9251
Cpgi9252 17 47139569 to 47141332 1763 CpG island CpG island 9252
Trerf1 17 47140942 to 47359458 218516 + protein coding gene transcriptional regulating factor 1
Tssr144895 17 47141132 to 47141154 22 + TSS region transcription start site region 144895
Tssr144896 17 47141199 to 47141243 44 + TSS region transcription start site region 144896
Tssr144897 17 47141737 to 47141773 36 + TSS region transcription start site region 144897
Gm36715 17 47152854 to 47156802 3948 - lncRNA gene predicted gene, 36715