Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:46686697-47346955

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110 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm26904 17 46471501 to 46825221 353720 + lincRNA gene predicted gene, 26904
Ppp2r5d 17 46682991 to 46705020 22029 - protein coding gene protein phosphatase 2, regulatory subunit B', delta
Cpgi9240 17 46704558 to 46705371 813 CpG island CpG island 9240
Tssr148375 17 46704902 to 46705000 98 - TSS region transcription start site region 148375
Tssr148376 17 46705002 to 46705013 11 - TSS region transcription start site region 148376
Cpgi9241 17 46711178 to 46712371 1193 CpG island CpG island 9241
Tssr144877 17 46711459 to 46711497 38 + TSS region transcription start site region 144877
Pex6 17 46711463 to 46725541 14078 + protein coding gene peroxisomal biogenesis factor 6
Gnmt 17 46725664 to 46729168 3504 - protein coding gene glycine N-methyltransferase
Tssr148377 17 46726314 to 46726323 9 - TSS region transcription start site region 148377
Tssr148378 17 46726327 to 46726342 15 - TSS region transcription start site region 148378
Tssr148379 17 46726344 to 46726355 11 - TSS region transcription start site region 148379
Tssr148380 17 46726709 to 46726718 9 - TSS region transcription start site region 148380
Tssr148381 17 46727356 to 46727372 16 - TSS region transcription start site region 148381
Cpgi9242 17 46728703 to 46729307 604 CpG island CpG island 9242
Tssr148382 17 46729158 to 46729172 14 - TSS region transcription start site region 148382
Cpgi9243 17 46729748 to 46729973 225 CpG island CpG island 9243
D17Mit116 17 46733378 to 46733525 147 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 116
Cnpy3 17 46735705 to 46752214 16509 - protein coding gene canopy FGF signaling regulator 3
Tssr148383 17 46736155 to 46736169 14 - TSS region transcription start site region 148383
Cpgi9244 17 46751659 to 46752541 882 CpG island CpG island 9244
Tssr144878 17 46751961 to 46751982 21 + TSS region transcription start site region 144878
Tssr148384 17 46752057 to 46752058 1 - TSS region transcription start site region 148384
Tssr148385 17 46752074 to 46752090 16 - TSS region transcription start site region 148385
Tssr148386 17 46752113 to 46752153 40 - TSS region transcription start site region 148386
Tssr148387 17 46752154 to 46752167 13 - TSS region transcription start site region 148387
Tssr148388 17 46752170 to 46752231 61 - TSS region transcription start site region 148388
Tssr144879 17 46752434 to 46752461 27 + TSS region transcription start site region 144879
Ptcra 17 46755663 to 46763712 8049 - protein coding gene pre T cell antigen receptor alpha
Tssr148389 17 46763576 to 46763644 68 - TSS region transcription start site region 148389
Tssr148390 17 46763647 to 46763675 28 - TSS region transcription start site region 148390
Tssr148391 17 46763691 to 46763708 17 - TSS region transcription start site region 148391
Tssr148392 17 46763715 to 46763724 9 - TSS region transcription start site region 148392
Tssr148393 17 46763727 to 46763741 14 - TSS region transcription start site region 148393
Tssr148394 17 46763748 to 46763766 18 - TSS region transcription start site region 148394
Tssr148395 17 46763772 to 46763779 7 - TSS region transcription start site region 148395
Tssr148396 17 46763792 to 46763808 16 - TSS region transcription start site region 148396
Cpgi9245 17 46772383 to 46773246 863 CpG island CpG island 9245
2310039H08Rik 17 46772635 to 46773396 761 + protein coding gene RIKEN cDNA 2310039H08 gene
Tssr144880 17 46772803 to 46772828 25 + TSS region transcription start site region 144880
Rpl7l1 17 46773907 to 46782656 8749 - protein coding gene ribosomal protein L7-like 1
Cpgi9246 17 46782239 to 46782986 747 CpG island CpG island 9246
Tssr148397 17 46782640 to 46782677 37 - TSS region transcription start site region 148397
Bicral 17 46798120 to 46858482 60362 - protein coding gene BRD4 interacting chromatin remodeling complex associated protein like
Tssr148398 17 46801873 to 46801893 20 - TSS region transcription start site region 148398
Tssr148399 17 46812156 to 46812173 17 - TSS region transcription start site region 148399
Tssr148400 17 46812176 to 46812187 11 - TSS region transcription start site region 148400
Tssr148401 17 46812201 to 46812215 14 - TSS region transcription start site region 148401
Tssr148402 17 46812356 to 46812369 13 - TSS region transcription start site region 148402
Tssr144881 17 46812784 to 46812796 12 + TSS region transcription start site region 144881
Myaa2 17 46821629 to 46821740 111 QTL modifier of Yaa 2
D17Mit36 17 46821629 to 46821740 111 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 36
Tssr148403 17 46830099 to 46830148 49 - TSS region transcription start site region 148403
Tssr148404 17 46832288 to 46832316 28 - TSS region transcription start site region 148404
Tssr144882 17 46832364 to 46832372 8 + TSS region transcription start site region 144882
Tssr144883 17 46832375 to 46832386 11 + TSS region transcription start site region 144883
Tssr144884 17 46832392 to 46832404 12 + TSS region transcription start site region 144884
Tssr144885 17 46833737 to 46833757 20 + TSS region transcription start site region 144885
Cpgi9247 17 46856405 to 46858702 2297 CpG island CpG island 9247
Tssr148405 17 46857490 to 46857538 48 - TSS region transcription start site region 148405
Tssr148406 17 46857666 to 46857678 12 - TSS region transcription start site region 148406
Tssr148407 17 46857698 to 46857713 15 - TSS region transcription start site region 148407
Tssr148408 17 46857722 to 46857741 19 - TSS region transcription start site region 148408
Tssr144886 17 46858217 to 46858252 35 + TSS region transcription start site region 144886
Tssr148409 17 46858454 to 46858515 61 - TSS region transcription start site region 148409
Tssr148410 17 46858656 to 46858684 28 - TSS region transcription start site region 148410
Tssr148411 17 46858685 to 46858707 22 - TSS region transcription start site region 148411
Tssr148412 17 46880527 to 46880532 5 - TSS region transcription start site region 148412
Cpgi9248 17 46889377 to 46891601 2224 CpG island CpG island 9248
Tssr144887 17 46890625 to 46890652 27 + TSS region transcription start site region 144887
Tssr144888 17 46890653 to 46890692 39 + TSS region transcription start site region 144888
Tbcc 17 46890684 to 46891847 1163 + protein coding gene tubulin-specific chaperone C
Tssr144889 17 46893915 to 46893921 6 + TSS region transcription start site region 144889
Tssr144890 17 46910452 to 46910464 12 + TSS region transcription start site region 144890
Tssr144891 17 46910469 to 46910487 18 + TSS region transcription start site region 144891
Prph2 17 46910485 to 46924926 14441 + protein coding gene peripherin 2
Tssr144892 17 46910488 to 46910499 11 + TSS region transcription start site region 144892
Tssr144893 17 46919848 to 46919857 9 + TSS region transcription start site region 144893
Tssr144894 17 46924622 to 46924628 6 + TSS region transcription start site region 144894
Ubr2 17 46928295 to 47010556 82261 - protein coding gene ubiquitin protein ligase E3 component n-recognin 2
Gm23657 17 46992623 to 46992916 293 - unclassified non-coding RNA gene predicted gene, 23657
Cpgi9249 17 47009745 to 47010756 1011 CpG island CpG island 9249
Tssr148413 17 47010411 to 47010430 19 - TSS region transcription start site region 148413
Tssr5138 17 47010435 to 47010458 23 - TSS region transcription start site region 5138
Tssr5139 17 47010476 to 47010493 17 - TSS region transcription start site region 5139
Tssr148414 17 47010513 to 47010568 55 - TSS region transcription start site region 148414
Tssr148415 17 47010574 to 47010592 18 - TSS region transcription start site region 148415
Gm16494 17 47016697 to 47016955 258 - pseudogene predicted gene 16494
Tssr148416 17 47017035 to 47017040 5 - TSS region transcription start site region 148416
Gm4945 17 47042587 to 47043039 452 - pseudogene predicted gene 4945
Tssr148417 17 47043057 to 47043090 33 - TSS region transcription start site region 148417
D17Mit107 17 47102682 to 47102831 149 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 107
D17Mit149 17 47102682 to 47102952 270 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 149
Cpgi9250 17 47115857 to 47116012 155 CpG island CpG island 9250
Gm41589 17 47135410 to 47140526 5116 - lncRNA gene predicted gene, 41589
Cpgi9251 17 47139019 to 47139374 355 CpG island CpG island 9251
Cpgi9252 17 47139569 to 47141332 1763 CpG island CpG island 9252
Trerf1 17 47140942 to 47359458 218516 + protein coding gene transcriptional regulating factor 1
Tssr144895 17 47141132 to 47141154 22 + TSS region transcription start site region 144895
Tssr144896 17 47141199 to 47141243 44 + TSS region transcription start site region 144896
Tssr144897 17 47141737 to 47141773 36 + TSS region transcription start site region 144897
Gm36715 17 47152854 to 47156802 3948 - lncRNA gene predicted gene, 36715
Tssr144898 17 47207101 to 47207124 23 + TSS region transcription start site region 144898
Tssr144899 17 47267368 to 47267377 9 + TSS region transcription start site region 144899
Gm26216 17 47290956 to 47291028 72 + rRNA gene predicted gene, 26216
Tssr144900 17 47313940 to 47313957 17 + TSS region transcription start site region 144900
Tssr144901 17 47314010 to 47314037 27 + TSS region transcription start site region 144901
Cpgi9253 17 47323379 to 47323661 282 CpG island CpG island 9253
Tssr144902 17 47325613 to 47325617 4 + TSS region transcription start site region 144902
9530075M24Rik 17 47327114 to 47327618 504 unclassified gene RIKEN cDNA 9530075M24 gene