Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:46430242-46680256

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Crip3 17 46428926 to 46431776 2850 + protein coding gene cysteine-rich protein 3
Slc22a7 17 46432183 to 46438457 6274 - protein coding gene solute carrier family 22 (organic anion transporter), member 7
Tssr148321 17 46433701 to 46433715 14 - TSS region transcription start site region 148321
Tssr144855 17 46433831 to 46433839 8 + TSS region transcription start site region 144855
Cpgi9224 17 46433849 to 46434062 213 CpG island CpG island 9224
Gm36541 17 46437355 to 46437990 635 + lncRNA gene predicted gene, 36541
Tssr148322 17 46438415 to 46438424 9 - TSS region transcription start site region 148322
Tssr148323 17 46438445 to 46438470 25 - TSS region transcription start site region 148323
Tssr148324 17 46438471 to 46438481 10 - TSS region transcription start site region 148324
Gm5093 17 46439578 to 46440097 519 - protein coding gene predicted gene 5093
Tssr148325 17 46440116 to 46440125 9 - TSS region transcription start site region 148325
Tssr148326 17 46442212 to 46442214 2 - TSS region transcription start site region 148326
Ttbk1 17 46442448 to 46487675 45227 - protein coding gene tau tubulin kinase 1
Cpgi9225 17 46444888 to 46445533 645 CpG island CpG island 9225
Cpgi9226 17 46454121 to 46454606 485 CpG island CpG island 9226
Cpgi9227 17 46455199 to 46456046 847 CpG island CpG island 9227
Cpgi9228 17 46460435 to 46461344 909 CpG island CpG island 9228
Gm26904 17 46471501 to 46825221 353720 + lincRNA gene predicted gene, 26904
Gm47119 17 46476507 to 46477659 1152 + antisense lncRNA gene predicted gene, 47119
Cpgi9229 17 46483659 to 46484277 618 CpG island CpG island 9229
Cpgi9230 17 46486636 to 46488077 1441 CpG island CpG island 9230
Tssr148327 17 46487641 to 46487682 41 - TSS region transcription start site region 148327
Cpgi9231 17 46496583 to 46497264 681 CpG island CpG island 9231
Tssr144856 17 46496753 to 46496809 56 + TSS region transcription start site region 144856
Dnph1 17 46496789 to 46499618 2829 + protein coding gene 2'-deoxynucleoside 5'-phosphate N-hydrolase 1
Cul9 17 46500609 to 46546388 45779 - protein coding gene cullin 9
Tssr148328 17 46520649 to 46520665 16 - TSS region transcription start site region 148328
Tssr148329 17 46520670 to 46520719 49 - TSS region transcription start site region 148329
Tssr144857 17 46520758 to 46520782 24 + TSS region transcription start site region 144857
Tssr144858 17 46520786 to 46520807 21 + TSS region transcription start site region 144858
Cpgi9232 17 46545957 to 46546596 639 CpG island CpG island 9232
Tssr148330 17 46546275 to 46546333 58 - TSS region transcription start site region 148330
Srf 17 46548329 to 46556175 7846 - protein coding gene serum response factor
Tssr148331 17 46552840 to 46552859 19 - TSS region transcription start site region 148331
Tssr148332 17 46552862 to 46552868 6 - TSS region transcription start site region 148332
Tssr148333 17 46552874 to 46552891 17 - TSS region transcription start site region 148333
Mir6976 17 46553827 to 46553889 62 - miRNA gene microRNA 6976
Cpgi9233 17 46554727 to 46556650 1923 CpG island CpG island 9233
Tssr5134 17 46555198 to 46555227 29 + TSS region transcription start site region 5134
Tssr144859 17 46555242 to 46555256 14 + TSS region transcription start site region 144859
Tssr148334 17 46555460 to 46555484 24 - TSS region transcription start site region 148334
Tssr148335 17 46556021 to 46556028 7 - TSS region transcription start site region 148335
Tssr148336 17 46556037 to 46556044 7 - TSS region transcription start site region 148336
Tssr148337 17 46556104 to 46556115 11 - TSS region transcription start site region 148337
Tssr148338 17 46556129 to 46556148 19 - TSS region transcription start site region 148338
Tssr148339 17 46556158 to 46556188 30 - TSS region transcription start site region 148339
Tssr148340 17 46556204 to 46556220 16 - TSS region transcription start site region 148340
Tssr144860 17 46556421 to 46556429 8 + TSS region transcription start site region 144860
Ptk7 17 46564471 to 46629504 65033 - protein coding gene PTK7 protein tyrosine kinase 7
Tssr5135 17 46572107 to 46572110 3 - TSS region transcription start site region 5135
Tssr148341 17 46587082 to 46587088 6 - TSS region transcription start site region 148341
Tssr148342 17 46590467 to 46590484 17 - TSS region transcription start site region 148342
Tssr148343 17 46590486 to 46590510 24 - TSS region transcription start site region 148343
Tssr148344 17 46599755 to 46599761 6 - TSS region transcription start site region 148344
Tssr144861 17 46623987 to 46624011 24 + TSS region transcription start site region 144861
Cpgi9234 17 46628527 to 46630089 1562 CpG island CpG island 9234
Tssr148345 17 46629357 to 46629378 21 - TSS region transcription start site region 148345
Tssr148346 17 46629404 to 46629419 15 - TSS region transcription start site region 148346
Tssr148347 17 46629420 to 46629500 80 - TSS region transcription start site region 148347
Tssr148348 17 46629731 to 46629742 11 - TSS region transcription start site region 148348
Tssr148349 17 46630033 to 46630082 49 - TSS region transcription start site region 148349
Klc4 17 46630624 to 46646022 15398 - protein coding gene kinesin light chain 4
Tssr148350 17 46637244 to 46637249 5 - TSS region transcription start site region 148350
Tssr148351 17 46640034 to 46640045 11 - TSS region transcription start site region 148351
Tssr148352 17 46640060 to 46640072 12 - TSS region transcription start site region 148352
Tssr148353 17 46640082 to 46640118 36 - TSS region transcription start site region 148353
Tssr148354 17 46640123 to 46640134 11 - TSS region transcription start site region 148354
Tssr148355 17 46645128 to 46645159 31 - TSS region transcription start site region 148355
Cpgi9235 17 46645444 to 46646614 1170 CpG island CpG island 9235
Tssr148356 17 46645763 to 46645786 23 - TSS region transcription start site region 148356
Tssr148357 17 46645996 to 46646035 39 - TSS region transcription start site region 148357
Tssr148358 17 46646037 to 46646085 48 - TSS region transcription start site region 148358
Tssr144862 17 46646225 to 46646272 47 + TSS region transcription start site region 144862
Mrpl2 17 46646229 to 46650139 3910 + protein coding gene mitochondrial ribosomal protein L2
Tssr144863 17 46646288 to 46646296 8 + TSS region transcription start site region 144863
Cpgi9236 17 46649852 to 46651247 1395 CpG island CpG island 9236
Tssr144864 17 46650328 to 46650340 12 + TSS region transcription start site region 144864
Cul7 17 46650338 to 46664364 14026 + protein coding gene cullin 7
Tssr144865 17 46650550 to 46650568 18 + TSS region transcription start site region 144865
Tssr144866 17 46650575 to 46650589 14 + TSS region transcription start site region 144866
Tssr144867 17 46650608 to 46650634 26 + TSS region transcription start site region 144867
Tssr144868 17 46650642 to 46650661 19 + TSS region transcription start site region 144868
Tssr144869 17 46655515 to 46655520 5 + TSS region transcription start site region 144869
Cpgi9237 17 46661775 to 46662213 438 CpG island CpG island 9237
Rrp36 17 46667442 to 46674285 6843 - protein coding gene ribosomal RNA processing 36 homolog (S. cerevisiae)
Cpgi9238 17 46673960 to 46674560 600 CpG island CpG island 9238
Tssr148359 17 46674263 to 46674274 11 - TSS region transcription start site region 148359
Tssr148360 17 46674284 to 46674289 5 - TSS region transcription start site region 148360
Tssr148361 17 46674298 to 46674323 25 - TSS region transcription start site region 148361
Klhdc3 17 46674550 to 46680914 6364 - protein coding gene kelch domain containing 3
Tssr148362 17 46675137 to 46675185 48 - TSS region transcription start site region 148362
Tssr148363 17 46676747 to 46676774 27 - TSS region transcription start site region 148363
Tssr148364 17 46678560 to 46678582 22 - TSS region transcription start site region 148364
Tssr148365 17 46678609 to 46678622 13 - TSS region transcription start site region 148365
Tssr148366 17 46678627 to 46678644 17 - TSS region transcription start site region 148366
Tssr144870 17 46678769 to 46678793 24 + TSS region transcription start site region 144870
Tssr144871 17 46678800 to 46678827 27 + TSS region transcription start site region 144871
Mea1 17 46679138 to 46683126 3988 + protein coding gene male enhanced antigen 1