Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:46297744-50197751

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840 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bhr3 17 3924615 to 48559063 44634448 QTL bronchial hyperresponsiveness 3
Mrdq1 17 30768929 to 47728778 16959849 QTL modifier of retinal degeneration QTL 1
repro17 17 31842678 to 47722705 15880027 heritable phenotypic marker reproductive mutant 17, JAX Reproductive Mutagenesis Program
Cfq4 17 44705665 to 49059374 4353709 QTL conditioned fear QTL 4
Cpgi9221 17 46297269 to 46299104 1835 CpG island CpG island 9221
Dlk2 17 46297421 to 46303271 5850 + protein coding gene delta like non-canonical Notch ligand 2
Tssr144845 17 46297852 to 46297863 11 + TSS region transcription start site region 144845
Tssr144846 17 46297917 to 46297938 21 + TSS region transcription start site region 144846
Gm41588 17 46299018 to 46300090 1072 + lncRNA gene predicted gene, 41588
Abcc10 17 46303230 to 46328032 24802 - protein coding gene ATP-binding cassette, sub-family C (CFTR/MRP), member 10
Cpgi9222 17 46327570 to 46328600 1030 CpG island CpG island 9222
Tssr148317 17 46327949 to 46327987 38 - TSS region transcription start site region 148317
Tssr148318 17 46327990 to 46328001 11 - TSS region transcription start site region 148318
Tssr144847 17 46328083 to 46328136 53 + TSS region transcription start site region 144847
BC040756 17 46351653 to 46357149 5496 + lncRNA gene cDNA sequence BC040756
Cpgi9223 17 46383194 to 46384698 1504 CpG island CpG island 9223
Tssr144848 17 46383543 to 46383566 23 + TSS region transcription start site region 144848
Tssr144849 17 46383569 to 46383622 53 + TSS region transcription start site region 144849
Tssr144850 17 46383725 to 46383792 67 + TSS region transcription start site region 144850
Zfp318 17 46383731 to 46420920 37189 + protein coding gene zinc finger protein 318
Tssr144851 17 46383798 to 46383822 24 + TSS region transcription start site region 144851
Gm23037 17 46403875 to 46404198 323 + unclassified non-coding RNA gene predicted gene, 23037
Gm9706 17 46407004 to 46407484 480 - unclassified gene predicted gene 9706
Tssr148319 17 46407497 to 46407524 27 - TSS region transcription start site region 148319
Tssr148320 17 46407552 to 46407587 35 - TSS region transcription start site region 148320
Tssr144852 17 46410886 to 46410896 10 + TSS region transcription start site region 144852
Tssr144853 17 46428917 to 46428929 12 + TSS region transcription start site region 144853
Crip3 17 46428926 to 46431776 2850 + protein coding gene cysteine-rich protein 3
Tssr144854 17 46428930 to 46428949 19 + TSS region transcription start site region 144854
Slc22a7 17 46432183 to 46438457 6274 - protein coding gene solute carrier family 22 (organic anion transporter), member 7
Tssr148321 17 46433701 to 46433715 14 - TSS region transcription start site region 148321
Tssr144855 17 46433831 to 46433839 8 + TSS region transcription start site region 144855
Cpgi9224 17 46433849 to 46434062 213 CpG island CpG island 9224
Gm36541 17 46437355 to 46437990 635 + lncRNA gene predicted gene, 36541
Tssr148322 17 46438415 to 46438424 9 - TSS region transcription start site region 148322
Tssr148323 17 46438445 to 46438470 25 - TSS region transcription start site region 148323
Tssr148324 17 46438471 to 46438481 10 - TSS region transcription start site region 148324
Gm5093 17 46439578 to 46440097 519 - protein coding gene predicted gene 5093
Tssr148325 17 46440116 to 46440125 9 - TSS region transcription start site region 148325
Tssr148326 17 46442212 to 46442214 2 - TSS region transcription start site region 148326
Ttbk1 17 46442448 to 46487675 45227 - protein coding gene tau tubulin kinase 1
Cpgi9225 17 46444888 to 46445533 645 CpG island CpG island 9225
Cpgi9226 17 46454121 to 46454606 485 CpG island CpG island 9226
Cpgi9227 17 46455199 to 46456046 847 CpG island CpG island 9227
Cpgi9228 17 46460435 to 46461344 909 CpG island CpG island 9228
Gm26904 17 46471501 to 46825221 353720 + lincRNA gene predicted gene, 26904
Gm47119 17 46476507 to 46477659 1152 + antisense lncRNA gene predicted gene, 47119
Cpgi9229 17 46483659 to 46484277 618 CpG island CpG island 9229
Cpgi9230 17 46486636 to 46488077 1441 CpG island CpG island 9230
Tssr148327 17 46487641 to 46487682 41 - TSS region transcription start site region 148327
Cpgi9231 17 46496583 to 46497264 681 CpG island CpG island 9231
Tssr144856 17 46496753 to 46496809 56 + TSS region transcription start site region 144856
Dnph1 17 46496789 to 46499618 2829 + protein coding gene 2'-deoxynucleoside 5'-phosphate N-hydrolase 1
Cul9 17 46500609 to 46546388 45779 - protein coding gene cullin 9
Tssr148328 17 46520649 to 46520665 16 - TSS region transcription start site region 148328
Tssr148329 17 46520670 to 46520719 49 - TSS region transcription start site region 148329
Tssr144857 17 46520758 to 46520782 24 + TSS region transcription start site region 144857
Tssr144858 17 46520786 to 46520807 21 + TSS region transcription start site region 144858
Cpgi9232 17 46545957 to 46546596 639 CpG island CpG island 9232
Tssr148330 17 46546275 to 46546333 58 - TSS region transcription start site region 148330
Srf 17 46548329 to 46556175 7846 - protein coding gene serum response factor
Tssr148331 17 46552840 to 46552859 19 - TSS region transcription start site region 148331
Tssr148332 17 46552862 to 46552868 6 - TSS region transcription start site region 148332
Tssr148333 17 46552874 to 46552891 17 - TSS region transcription start site region 148333
Mir6976 17 46553827 to 46553889 62 - miRNA gene microRNA 6976
Cpgi9233 17 46554727 to 46556650 1923 CpG island CpG island 9233
Tssr5134 17 46555198 to 46555227 29 + TSS region transcription start site region 5134
Tssr144859 17 46555242 to 46555256 14 + TSS region transcription start site region 144859
Tssr148334 17 46555460 to 46555484 24 - TSS region transcription start site region 148334
Tssr148335 17 46556021 to 46556028 7 - TSS region transcription start site region 148335
Tssr148336 17 46556037 to 46556044 7 - TSS region transcription start site region 148336
Tssr148337 17 46556104 to 46556115 11 - TSS region transcription start site region 148337
Tssr148338 17 46556129 to 46556148 19 - TSS region transcription start site region 148338
Tssr148339 17 46556158 to 46556188 30 - TSS region transcription start site region 148339
Tssr148340 17 46556204 to 46556220 16 - TSS region transcription start site region 148340
Tssr144860 17 46556421 to 46556429 8 + TSS region transcription start site region 144860
Ptk7 17 46564471 to 46629504 65033 - protein coding gene PTK7 protein tyrosine kinase 7
Tssr5135 17 46572107 to 46572110 3 - TSS region transcription start site region 5135
Tssr148341 17 46587082 to 46587088 6 - TSS region transcription start site region 148341
Tssr148342 17 46590467 to 46590484 17 - TSS region transcription start site region 148342
Tssr148343 17 46590486 to 46590510 24 - TSS region transcription start site region 148343
Tssr148344 17 46599755 to 46599761 6 - TSS region transcription start site region 148344
Tssr144861 17 46623987 to 46624011 24 + TSS region transcription start site region 144861
Cpgi9234 17 46628527 to 46630089 1562 CpG island CpG island 9234
Tssr148345 17 46629357 to 46629378 21 - TSS region transcription start site region 148345
Tssr148346 17 46629404 to 46629419 15 - TSS region transcription start site region 148346
Tssr148347 17 46629420 to 46629500 80 - TSS region transcription start site region 148347
Tssr148348 17 46629731 to 46629742 11 - TSS region transcription start site region 148348
Tssr148349 17 46630033 to 46630082 49 - TSS region transcription start site region 148349
Klc4 17 46630624 to 46646022 15398 - protein coding gene kinesin light chain 4
Tssr148350 17 46637244 to 46637249 5 - TSS region transcription start site region 148350
Tssr148351 17 46640034 to 46640045 11 - TSS region transcription start site region 148351
Tssr148352 17 46640060 to 46640072 12 - TSS region transcription start site region 148352
Tssr148353 17 46640082 to 46640118 36 - TSS region transcription start site region 148353
Tssr148354 17 46640123 to 46640134 11 - TSS region transcription start site region 148354
Tssr148355 17 46645128 to 46645159 31 - TSS region transcription start site region 148355
Cpgi9235 17 46645444 to 46646614 1170 CpG island CpG island 9235
Tssr148356 17 46645763 to 46645786 23 - TSS region transcription start site region 148356
Tssr148357 17 46645996 to 46646035 39 - TSS region transcription start site region 148357
Tssr148358 17 46646037 to 46646085 48 - TSS region transcription start site region 148358
Tssr144862 17 46646225 to 46646272 47 + TSS region transcription start site region 144862
Mrpl2 17 46646229 to 46650139 3910 + protein coding gene mitochondrial ribosomal protein L2
Tssr144863 17 46646288 to 46646296 8 + TSS region transcription start site region 144863
Cpgi9236 17 46649852 to 46651247 1395 CpG island CpG island 9236
Tssr144864 17 46650328 to 46650340 12 + TSS region transcription start site region 144864
Cul7 17 46650338 to 46664364 14026 + protein coding gene cullin 7
Tssr144865 17 46650550 to 46650568 18 + TSS region transcription start site region 144865
Tssr144866 17 46650575 to 46650589 14 + TSS region transcription start site region 144866
Tssr144867 17 46650608 to 46650634 26 + TSS region transcription start site region 144867
Tssr144868 17 46650642 to 46650661 19 + TSS region transcription start site region 144868
Tssr144869 17 46655515 to 46655520 5 + TSS region transcription start site region 144869
Cpgi9237 17 46661775 to 46662213 438 CpG island CpG island 9237
Rrp36 17 46667442 to 46674285 6843 - protein coding gene ribosomal RNA processing 36 homolog (S. cerevisiae)
Cpgi9238 17 46673960 to 46674560 600 CpG island CpG island 9238
Tssr148359 17 46674263 to 46674274 11 - TSS region transcription start site region 148359
Tssr148360 17 46674284 to 46674289 5 - TSS region transcription start site region 148360
Tssr148361 17 46674298 to 46674323 25 - TSS region transcription start site region 148361
Klhdc3 17 46674550 to 46680914 6364 - protein coding gene kelch domain containing 3
Tssr148362 17 46675137 to 46675185 48 - TSS region transcription start site region 148362
Tssr148363 17 46676747 to 46676774 27 - TSS region transcription start site region 148363
Tssr148364 17 46678560 to 46678582 22 - TSS region transcription start site region 148364
Tssr148365 17 46678609 to 46678622 13 - TSS region transcription start site region 148365
Tssr148366 17 46678627 to 46678644 17 - TSS region transcription start site region 148366
Tssr144870 17 46678769 to 46678793 24 + TSS region transcription start site region 144870
Tssr144871 17 46678800 to 46678827 27 + TSS region transcription start site region 144871
Mea1 17 46679138 to 46683126 3988 + protein coding gene male enhanced antigen 1
Tssr144872 17 46680424 to 46680478 54 + TSS region transcription start site region 144872
Cpgi9239 17 46680454 to 46681576 1122 CpG island CpG island 9239
Tssr148367 17 46680726 to 46680734 8 - TSS region transcription start site region 148367
Tssr148368 17 46680749 to 46680756 7 - TSS region transcription start site region 148368
Tssr148369 17 46680764 to 46680775 11 - TSS region transcription start site region 148369
Tssr5136 17 46680776 to 46680781 5 - TSS region transcription start site region 5136
Tssr148370 17 46680786 to 46680834 48 - TSS region transcription start site region 148370
Tssr148371 17 46680847 to 46680859 12 - TSS region transcription start site region 148371
Tssr148372 17 46680870 to 46680933 63 - TSS region transcription start site region 148372
Tssr5137 17 46680935 to 46680944 9 - TSS region transcription start site region 5137
Tssr144873 17 46680980 to 46681011 31 + TSS region transcription start site region 144873
Tssr144874 17 46681038 to 46681184 146 + TSS region transcription start site region 144874
Tssr148373 17 46681901 to 46681905 4 - TSS region transcription start site region 148373
Tssr148374 17 46681913 to 46681924 11 - TSS region transcription start site region 148374
Tssr144875 17 46681976 to 46682034 58 + TSS region transcription start site region 144875
Tssr144876 17 46682035 to 46682040 5 + TSS region transcription start site region 144876
Ppp2r5d 17 46682991 to 46705020 22029 - protein coding gene protein phosphatase 2, regulatory subunit B', delta
Cpgi9240 17 46704558 to 46705371 813 CpG island CpG island 9240
Tssr148375 17 46704902 to 46705000 98 - TSS region transcription start site region 148375
Tssr148376 17 46705002 to 46705013 11 - TSS region transcription start site region 148376
Cpgi9241 17 46711178 to 46712371 1193 CpG island CpG island 9241
Tssr144877 17 46711459 to 46711497 38 + TSS region transcription start site region 144877
Pex6 17 46711463 to 46725541 14078 + protein coding gene peroxisomal biogenesis factor 6
Gnmt 17 46725664 to 46729168 3504 - protein coding gene glycine N-methyltransferase
Tssr148377 17 46726314 to 46726323 9 - TSS region transcription start site region 148377
Tssr148378 17 46726327 to 46726342 15 - TSS region transcription start site region 148378
Tssr148379 17 46726344 to 46726355 11 - TSS region transcription start site region 148379
Tssr148380 17 46726709 to 46726718 9 - TSS region transcription start site region 148380
Tssr148381 17 46727356 to 46727372 16 - TSS region transcription start site region 148381
Cpgi9242 17 46728703 to 46729307 604 CpG island CpG island 9242
Tssr148382 17 46729158 to 46729172 14 - TSS region transcription start site region 148382
Cpgi9243 17 46729748 to 46729973 225 CpG island CpG island 9243
D17Mit116 17 46733378 to 46733525 147 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 116
Cnpy3 17 46735705 to 46752214 16509 - protein coding gene canopy FGF signaling regulator 3
Tssr148383 17 46736155 to 46736169 14 - TSS region transcription start site region 148383
Cpgi9244 17 46751659 to 46752541 882 CpG island CpG island 9244
Tssr144878 17 46751961 to 46751982 21 + TSS region transcription start site region 144878
Tssr148384 17 46752057 to 46752058 1 - TSS region transcription start site region 148384
Tssr148385 17 46752074 to 46752090 16 - TSS region transcription start site region 148385
Tssr148386 17 46752113 to 46752153 40 - TSS region transcription start site region 148386
Tssr148387 17 46752154 to 46752167 13 - TSS region transcription start site region 148387
Tssr148388 17 46752170 to 46752231 61 - TSS region transcription start site region 148388
Tssr144879 17 46752434 to 46752461 27 + TSS region transcription start site region 144879
Ptcra 17 46755663 to 46763712 8049 - protein coding gene pre T cell antigen receptor alpha
Tssr148389 17 46763576 to 46763644 68 - TSS region transcription start site region 148389
Tssr148390 17 46763647 to 46763675 28 - TSS region transcription start site region 148390
Tssr148391 17 46763691 to 46763708 17 - TSS region transcription start site region 148391
Tssr148392 17 46763715 to 46763724 9 - TSS region transcription start site region 148392
Tssr148393 17 46763727 to 46763741 14 - TSS region transcription start site region 148393
Tssr148394 17 46763748 to 46763766 18 - TSS region transcription start site region 148394
Tssr148395 17 46763772 to 46763779 7 - TSS region transcription start site region 148395
Tssr148396 17 46763792 to 46763808 16 - TSS region transcription start site region 148396
Cpgi9245 17 46772383 to 46773246 863 CpG island CpG island 9245
2310039H08Rik 17 46772635 to 46773396 761 + protein coding gene RIKEN cDNA 2310039H08 gene
Tssr144880 17 46772803 to 46772828 25 + TSS region transcription start site region 144880
Rpl7l1 17 46773907 to 46782656 8749 - protein coding gene ribosomal protein L7-like 1
Cpgi9246 17 46782239 to 46782986 747 CpG island CpG island 9246
Tssr148397 17 46782640 to 46782677 37 - TSS region transcription start site region 148397
Bicral 17 46798120 to 46858482 60362 - protein coding gene BRD4 interacting chromatin remodeling complex associated protein like
Tssr148398 17 46801873 to 46801893 20 - TSS region transcription start site region 148398
Tssr148399 17 46812156 to 46812173 17 - TSS region transcription start site region 148399
Tssr148400 17 46812176 to 46812187 11 - TSS region transcription start site region 148400
Tssr148401 17 46812201 to 46812215 14 - TSS region transcription start site region 148401
Tssr148402 17 46812356 to 46812369 13 - TSS region transcription start site region 148402
Tssr144881 17 46812784 to 46812796 12 + TSS region transcription start site region 144881
Myaa2 17 46821629 to 46821740 111 QTL modifier of Yaa 2
D17Mit36 17 46821629 to 46821740 111 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 36
Tssr148403 17 46830099 to 46830148 49 - TSS region transcription start site region 148403
Tssr148404 17 46832288 to 46832316 28 - TSS region transcription start site region 148404
Tssr144882 17 46832364 to 46832372 8 + TSS region transcription start site region 144882
Tssr144883 17 46832375 to 46832386 11 + TSS region transcription start site region 144883
Tssr144884 17 46832392 to 46832404 12 + TSS region transcription start site region 144884
Tssr144885 17 46833737 to 46833757 20 + TSS region transcription start site region 144885
Cpgi9247 17 46856405 to 46858702 2297 CpG island CpG island 9247