Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:46048083-46608136

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159 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm36200 17 46067335 to 46084266 16931 - lincRNA gene predicted gene, 36200
Tssr148298 17 46073710 to 46073753 43 - TSS region transcription start site region 148298
Cpgi9212 17 46073793 to 46074201 408 CpG island CpG island 9212
Cpgi9213 17 46086276 to 46086502 226 CpG island CpG island 9213
Gm19969 17 46094503 to 46094671 168 - pseudogene predicted gene, 19969
Tssr148299 17 46096634 to 46096647 13 - TSS region transcription start site region 148299
Tssr148300 17 46096658 to 46096667 9 - TSS region transcription start site region 148300
Tssr144813 17 46109010 to 46109027 17 + TSS region transcription start site region 144813
Cpgi9214 17 46110753 to 46111323 570 CpG island CpG island 9214
Tssr144814 17 46110982 to 46111022 40 + TSS region transcription start site region 144814
Mrps18a 17 46111004 to 46128908 17904 + protein coding gene mitochondrial ribosomal protein S18A
Rsph9 17 46122035 to 46144216 22181 - protein coding gene radial spoke head 9 homolog (Chlamydomonas)
Tssr144815 17 46122749 to 46122774 25 + TSS region transcription start site region 144815
Tssr5133 17 46124227 to 46124230 3 + TSS region transcription start site region 5133
Tssr144816 17 46124263 to 46124278 15 + TSS region transcription start site region 144816
Tssr144817 17 46124287 to 46124313 26 + TSS region transcription start site region 144817
D17Mit200 17 46138660 to 46138782 122 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 200
D17Dcr9 17 46138715 to 46138841 126 DNA segment DNA Segment, Chr 17, Derry C. Roopenian 9
Cpgi9215 17 46143820 to 46144336 516 CpG island CpG island 9215
Tssr148301 17 46144156 to 46144218 62 - TSS region transcription start site region 148301
Mad2l1bp 17 46147385 to 46153551 6166 - protein coding gene MAD2L1 binding protein
Cpgi9216 17 46153300 to 46153682 382 CpG island CpG island 9216
Tssr148302 17 46153497 to 46153511 14 - TSS region transcription start site region 148302
Tssr148303 17 46153517 to 46153543 26 - TSS region transcription start site region 148303
D17Mit138 17 46158635 to 46158776 141 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 138
Alan1 17 46158776 to 4804477 -41354299 QTL alloantigen response 1
Tssr144818 17 46159212 to 46159223 11 + TSS region transcription start site region 144818
Tssr144819 17 46159268 to 46159277 9 + TSS region transcription start site region 144819
Tssr144820 17 46159565 to 46159611 46 + TSS region transcription start site region 144820
Tssr148304 17 46160410 to 46160417 7 - TSS region transcription start site region 148304
Tssr144821 17 46160561 to 46160577 16 + TSS region transcription start site region 144821
Cpgi9217 17 46160723 to 46161349 626 CpG island CpG island 9217
Tssr144822 17 46161021 to 46161072 51 + TSS region transcription start site region 144822
Gtpbp2 17 46161032 to 46169370 8338 + protein coding gene GTP binding protein 2
Tssr144823 17 46161074 to 46161085 11 + TSS region transcription start site region 144823
Tssr144824 17 46161126 to 46161148 22 + TSS region transcription start site region 144824
Tssr144825 17 46161149 to 46161168 19 + TSS region transcription start site region 144825
Tssr144826 17 46163075 to 46163121 46 + TSS region transcription start site region 144826
Tssr144827 17 46163153 to 46163183 30 + TSS region transcription start site region 144827
Tssr144828 17 46163202 to 46163225 23 + TSS region transcription start site region 144828
Tssr144829 17 46163232 to 46163252 20 + TSS region transcription start site region 144829
Tssr144830 17 46163456 to 46163486 30 + TSS region transcription start site region 144830
Polh 17 46171355 to 46202645 31290 - protein coding gene polymerase (DNA directed), eta (RAD 30 related)
Cpgi9218 17 46202031 to 46203608 1577 CpG island CpG island 9218
Tssr148305 17 46202450 to 46202473 23 - TSS region transcription start site region 148305
Tssr148306 17 46202487 to 46202515 28 - TSS region transcription start site region 148306
Tssr148307 17 46202576 to 46202673 97 - TSS region transcription start site region 148307
Tssr144831 17 46202740 to 46202854 114 + TSS region transcription start site region 144831
Xpo5 17 46202855 to 46242299 39444 + protein coding gene exportin 5
Tssr144832 17 46202861 to 46202878 17 + TSS region transcription start site region 144832
Tssr144833 17 46227770 to 46227780 10 + TSS region transcription start site region 144833
Tssr144834 17 46227788 to 46227799 11 + TSS region transcription start site region 144834
Tssr144835 17 46227803 to 46227808 5 + TSS region transcription start site region 144835
Tssr144836 17 46227827 to 46227830 3 + TSS region transcription start site region 144836
Tssr144837 17 46227869 to 46227870 1 + TSS region transcription start site region 144837
Mir693 17 46231531 to 46231619 88 + miRNA gene microRNA 693
Gm22474 17 46232725 to 46232831 106 - snRNA gene predicted gene, 22474
Polr1c 17 46243920 to 46248045 4125 - protein coding gene polymerase (RNA) I polypeptide C
Cpgi9219 17 46247517 to 46248932 1415 CpG island CpG island 9219
Tssr148308 17 46247969 to 46248000 31 - TSS region transcription start site region 148308
Tssr144838 17 46248069 to 46248139 70 + TSS region transcription start site region 144838
Yipf3 17 46248080 to 46252537 4457 + protein coding gene Yip1 domain family, member 3
Tssr144839 17 46248173 to 46248176 3 + TSS region transcription start site region 144839
Tssr144840 17 46248192 to 46248201 9 + TSS region transcription start site region 144840
Cpgi9220 17 46253457 to 46254940 1483 CpG island CpG island 9220
Tssr144841 17 46253917 to 46253978 61 + TSS region transcription start site region 144841
Tssr144842 17 46253981 to 46253986 5 + TSS region transcription start site region 144842
Tssr144843 17 46254017 to 46254022 5 + TSS region transcription start site region 144843
Lrrc73 17 46254165 to 46257316 3151 + protein coding gene leucine rich repeat containing 73
Tjap1 17 46257851 to 46283026 25175 - protein coding gene tight junction associated protein 1
Tssr148309 17 46264595 to 46264596 1 - TSS region transcription start site region 148309
Tssr148310 17 46264933 to 46264953 20 - TSS region transcription start site region 148310
Tssr148311 17 46270788 to 46270809 21 - TSS region transcription start site region 148311
Tssr148312 17 46270813 to 46270824 11 - TSS region transcription start site region 148312
Tssr148313 17 46270851 to 46270864 13 - TSS region transcription start site region 148313
Gm26785 17 46273479 to 46280060 6581 + lincRNA gene predicted gene, 26785
Tssr148314 17 46282482 to 46282493 11 - TSS region transcription start site region 148314
Tssr148315 17 46282648 to 46282676 28 - TSS region transcription start site region 148315
Tssr148316 17 46282991 to 46283026 35 - TSS region transcription start site region 148316
D17Mit235 17 46284264 to 46284354 90 DNA segment DNA Segment, Chr 17, Massachusetts Institute of Technology 235
Cpgi9221 17 46297269 to 46299104 1835 CpG island CpG island 9221
Tssr144844 17 46297406 to 46297447 41 + TSS region transcription start site region 144844
Dlk2 17 46297421 to 46303271 5850 + protein coding gene delta like non-canonical Notch ligand 2
Tssr144845 17 46297852 to 46297863 11 + TSS region transcription start site region 144845
Tssr144846 17 46297917 to 46297938 21 + TSS region transcription start site region 144846
Gm41588 17 46299018 to 46300090 1072 + lncRNA gene predicted gene, 41588
Abcc10 17 46303230 to 46328032 24802 - protein coding gene ATP-binding cassette, sub-family C (CFTR/MRP), member 10
Cpgi9222 17 46327570 to 46328600 1030 CpG island CpG island 9222
Tssr148317 17 46327949 to 46327987 38 - TSS region transcription start site region 148317
Tssr148318 17 46327990 to 46328001 11 - TSS region transcription start site region 148318
Tssr144847 17 46328083 to 46328136 53 + TSS region transcription start site region 144847
BC040756 17 46351653 to 46357149 5496 + lncRNA gene cDNA sequence BC040756
Cpgi9223 17 46383194 to 46384698 1504 CpG island CpG island 9223
Tssr144848 17 46383543 to 46383566 23 + TSS region transcription start site region 144848
Tssr144849 17 46383569 to 46383622 53 + TSS region transcription start site region 144849
Tssr144850 17 46383725 to 46383792 67 + TSS region transcription start site region 144850
Zfp318 17 46383731 to 46420920 37189 + protein coding gene zinc finger protein 318
Tssr144851 17 46383798 to 46383822 24 + TSS region transcription start site region 144851
Gm23037 17 46403875 to 46404198 323 + unclassified non-coding RNA gene predicted gene, 23037
Gm9706 17 46407004 to 46407484 480 - unclassified gene predicted gene 9706
Tssr148319 17 46407497 to 46407524 27 - TSS region transcription start site region 148319
Tssr148320 17 46407552 to 46407587 35 - TSS region transcription start site region 148320
Tssr144852 17 46410886 to 46410896 10 + TSS region transcription start site region 144852
Tssr144853 17 46428917 to 46428929 12 + TSS region transcription start site region 144853
Crip3 17 46428926 to 46431776 2850 + protein coding gene cysteine-rich protein 3
Tssr144854 17 46428930 to 46428949 19 + TSS region transcription start site region 144854
Slc22a7 17 46432183 to 46438457 6274 - protein coding gene solute carrier family 22 (organic anion transporter), member 7
Tssr148321 17 46433701 to 46433715 14 - TSS region transcription start site region 148321
Tssr144855 17 46433831 to 46433839 8 + TSS region transcription start site region 144855
Cpgi9224 17 46433849 to 46434062 213 CpG island CpG island 9224
Gm36541 17 46437355 to 46437990 635 + lncRNA gene predicted gene, 36541
Tssr148322 17 46438415 to 46438424 9 - TSS region transcription start site region 148322
Tssr148323 17 46438445 to 46438470 25 - TSS region transcription start site region 148323
Tssr148324 17 46438471 to 46438481 10 - TSS region transcription start site region 148324
Gm5093 17 46439578 to 46440097 519 - protein coding gene predicted gene 5093
Tssr148325 17 46440116 to 46440125 9 - TSS region transcription start site region 148325
Tssr148326 17 46442212 to 46442214 2 - TSS region transcription start site region 148326
Ttbk1 17 46442448 to 46487675 45227 - protein coding gene tau tubulin kinase 1
Cpgi9225 17 46444888 to 46445533 645 CpG island CpG island 9225
Cpgi9226 17 46454121 to 46454606 485 CpG island CpG island 9226
Cpgi9227 17 46455199 to 46456046 847 CpG island CpG island 9227
Cpgi9228 17 46460435 to 46461344 909 CpG island CpG island 9228
Gm26904 17 46471501 to 46825221 353720 + lincRNA gene predicted gene, 26904
Gm47119 17 46476507 to 46477659 1152 + antisense lncRNA gene predicted gene, 47119
Cpgi9229 17 46483659 to 46484277 618 CpG island CpG island 9229
Cpgi9230 17 46486636 to 46488077 1441 CpG island CpG island 9230
Tssr148327 17 46487641 to 46487682 41 - TSS region transcription start site region 148327
Cpgi9231 17 46496583 to 46497264 681 CpG island CpG island 9231
Tssr144856 17 46496753 to 46496809 56 + TSS region transcription start site region 144856
Dnph1 17 46496789 to 46499618 2829 + protein coding gene 2'-deoxynucleoside 5'-phosphate N-hydrolase 1
Cul9 17 46500609 to 46546388 45779 - protein coding gene cullin 9
Tssr148328 17 46520649 to 46520665 16 - TSS region transcription start site region 148328
Tssr148329 17 46520670 to 46520719 49 - TSS region transcription start site region 148329
Tssr144857 17 46520758 to 46520782 24 + TSS region transcription start site region 144857
Tssr144858 17 46520786 to 46520807 21 + TSS region transcription start site region 144858
Cpgi9232 17 46545957 to 46546596 639 CpG island CpG island 9232
Tssr148330 17 46546275 to 46546333 58 - TSS region transcription start site region 148330
Srf 17 46548329 to 46556175 7846 - protein coding gene serum response factor
Tssr148331 17 46552840 to 46552859 19 - TSS region transcription start site region 148331
Tssr148332 17 46552862 to 46552868 6 - TSS region transcription start site region 148332
Tssr148333 17 46552874 to 46552891 17 - TSS region transcription start site region 148333
Mir6976 17 46553827 to 46553889 62 - miRNA gene microRNA 6976
Cpgi9233 17 46554727 to 46556650 1923 CpG island CpG island 9233
Tssr5134 17 46555198 to 46555227 29 + TSS region transcription start site region 5134
Tssr144859 17 46555242 to 46555256 14 + TSS region transcription start site region 144859
Tssr148334 17 46555460 to 46555484 24 - TSS region transcription start site region 148334
Tssr148335 17 46556021 to 46556028 7 - TSS region transcription start site region 148335
Tssr148336 17 46556037 to 46556044 7 - TSS region transcription start site region 148336
Tssr148337 17 46556104 to 46556115 11 - TSS region transcription start site region 148337
Tssr148338 17 46556129 to 46556148 19 - TSS region transcription start site region 148338
Tssr148339 17 46556158 to 46556188 30 - TSS region transcription start site region 148339
Tssr148340 17 46556204 to 46556220 16 - TSS region transcription start site region 148340
Tssr144860 17 46556421 to 46556429 8 + TSS region transcription start site region 144860
Ptk7 17 46564471 to 46629504 65033 - protein coding gene PTK7 protein tyrosine kinase 7
Tssr5135 17 46572107 to 46572110 3 - TSS region transcription start site region 5135
Tssr148341 17 46587082 to 46587088 6 - TSS region transcription start site region 148341
Tssr148342 17 46590467 to 46590484 17 - TSS region transcription start site region 148342
Tssr148343 17 46590486 to 46590510 24 - TSS region transcription start site region 148343
Tssr148344 17 46599755 to 46599761 6 - TSS region transcription start site region 148344