Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:45626875-46023882

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Capn11 17 45630204 to 45659325 29121 - protein coding gene calpain 11
Cpgi9200 17 45630229 to 45630623 394 CpG island CpG island 9200
Cpgi9201 17 45642546 to 45642935 389 CpG island CpG island 9201
Tssr148266 17 45659312 to 45659335 23 - TSS region transcription start site region 148266
Tmem63b 17 45660172 to 45686254 26082 - protein coding gene transmembrane protein 63b
Cpgi9202 17 45661351 to 45661643 292 CpG island CpG island 9202
Cpgi9203 17 45662819 to 45663094 275 CpG island CpG island 9203
Cpgi9204 17 45663320 to 45663809 489 CpG island CpG island 9204
Gm16172 17 45663519 to 45666209 2690 + antisense lncRNA gene predicted gene 16172
Tssr148267 17 45674230 to 45674233 3 - TSS region transcription start site region 148267
Cpgi9205 17 45685167 to 45686783 1616 CpG island CpG island 9205
Tssr148268 17 45686080 to 45686087 7 - TSS region transcription start site region 148268
Tssr148269 17 45686133 to 45686185 52 - TSS region transcription start site region 148269
Tssr148270 17 45686210 to 45686213 3 - TSS region transcription start site region 148270
Tssr148271 17 45686214 to 45686265 51 - TSS region transcription start site region 148271
Mrpl14 17 45686322 to 45698495 12173 + protein coding gene mitochondrial ribosomal protein L14
Tssr144807 17 45686335 to 45686402 67 + TSS region transcription start site region 144807
Tssr148272 17 45686792 to 45686806 14 - TSS region transcription start site region 148272
Tssr148273 17 45686810 to 45686829 19 - TSS region transcription start site region 148273
Tssr148274 17 45686854 to 45686882 28 - TSS region transcription start site region 148274
Tssr148275 17 45686899 to 45686923 24 - TSS region transcription start site region 148275
Tssr144808 17 45695422 to 45695433 11 + TSS region transcription start site region 144808
Tssr144809 17 45699582 to 45699587 5 + TSS region transcription start site region 144809
Gm35456 17 45700864 to 45726904 26040 - lncRNA gene predicted gene, 35456
Tssr148276 17 45721066 to 45721106 40 - TSS region transcription start site region 148276
Cpgi9206 17 45724098 to 45724440 342 CpG island CpG island 9206
BE949265 17 45727825 to 45732218 4393 + unclassified gene cDNA sequence BE949265
1600014C23Rik 17 45732864 to 45733844 980 - protein coding gene RIKEN cDNA 1600014C23 gene
Cpgi9207 17 45733508 to 45734291 783 CpG island CpG island 9207
Tssr148277 17 45733843 to 45733848 5 - TSS region transcription start site region 148277
F630040K05Rik 17 45734506 to 45786745 52239 + lincRNA gene RIKEN cDNA F630040K05 gene
Tssr144810 17 45734585 to 45734630 45 + TSS region transcription start site region 144810
Cpgi9208 17 45736338 to 45737491 1153 CpG island CpG island 9208
Tssr148278 17 45746786 to 45746793 7 - TSS region transcription start site region 148278
Tssr148279 17 45746802 to 45746819 17 - TSS region transcription start site region 148279
Tssr148280 17 45746821 to 45746874 53 - TSS region transcription start site region 148280
Tssr5132 17 45747119 to 45747129 10 + TSS region transcription start site region 5132
Tssr148281 17 45756622 to 45756628 6 - TSS region transcription start site region 148281
Tssr148282 17 45756960 to 45756974 14 - TSS region transcription start site region 148282
Tssr148283 17 45757949 to 45757959 10 - TSS region transcription start site region 148283
Tssr144811 17 45758249 to 45758258 9 + TSS region transcription start site region 144811
Gm46607 17 45788733 to 45826352 37619 + lncRNA gene predicted gene, 46607
Cpgi9209 17 45805134 to 45806028 894 CpG island CpG island 9209
Gm35692 17 45821875 to 45828882 7007 - lincRNA gene predicted gene, 35692
Tssr148284 17 45828853 to 45828882 29 - TSS region transcription start site region 148284
4930542M03Rik 17 45880119 to 45881452 1333 - lincRNA gene RIKEN cDNA 4930542M03 gene
Gm41584 17 45885346 to 45888630 3284 + lincRNA gene predicted gene, 41584
Cpgi9210 17 45886387 to 45886548 161 CpG island CpG island 9210
Gm41585 17 45935294 to 45946453 11159 + lncRNA gene predicted gene, 41585
Gm36122 17 45942060 to 45948832 6772 - lncRNA gene predicted gene, 36122
Gm49805 17 45961859 to 45963849 1990 + lincRNA gene predicted gene, 49805
Vegfa 17 46016993 to 46032369 15376 - protein coding gene vascular endothelial growth factor A
Tssr148285 17 46017635 to 46017646 11 - TSS region transcription start site region 148285
Tssr148286 17 46017753 to 46017770 17 - TSS region transcription start site region 148286
Tssr148287 17 46018252 to 46018272 20 - TSS region transcription start site region 148287
Tssr148288 17 46018670 to 46018682 12 - TSS region transcription start site region 148288