Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 17:45446322-45938495

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188 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spats1 17 45445877 to 45475194 29317 - protein coding gene spermatogenesis associated, serine-rich 1
Tssr144772 17 45456117 to 45456121 4 + TSS region transcription start site region 144772
Tssr144773 17 45456926 to 45456941 15 + TSS region transcription start site region 144773
Tssr144774 17 45456956 to 45456981 25 + TSS region transcription start site region 144774
Tssr144775 17 45457012 to 45457021 9 + TSS region transcription start site region 144775
Tssr148197 17 45458872 to 45458881 9 - TSS region transcription start site region 148197
Tssr148198 17 45458943 to 45458953 10 - TSS region transcription start site region 148198
Tssr148199 17 45458979 to 45459008 29 - TSS region transcription start site region 148199
Tssr144776 17 45459248 to 45459268 20 + TSS region transcription start site region 144776
Tssr148200 17 45461617 to 45461631 14 - TSS region transcription start site region 148200
Gm9104 17 45465788 to 45466270 482 + pseudogene predicted gene 9104
Cpgi9184 17 45474651 to 45475144 493 CpG island CpG island 9184
Tssr148201 17 45474839 to 45474885 46 - TSS region transcription start site region 148201
Tssr144777 17 45487387 to 45487398 11 + TSS region transcription start site region 144777
Tssr5127 17 45487400 to 45487405 5 + TSS region transcription start site region 5127
Tssr144778 17 45487407 to 45487422 15 + TSS region transcription start site region 144778
Tssr144779 17 45487435 to 45487446 11 + TSS region transcription start site region 144779
Tssr144780 17 45487452 to 45487463 11 + TSS region transcription start site region 144780
Tssr148202 17 45488375 to 45488391 16 - TSS region transcription start site region 148202
Tssr148203 17 45488583 to 45488588 5 - TSS region transcription start site region 148203
Tssr148204 17 45488664 to 45488702 38 - TSS region transcription start site region 148204
Tssr144781 17 45495737 to 45495759 22 + TSS region transcription start site region 144781
Cpgi9185 17 45506757 to 45507203 446 CpG island CpG island 9185
Tssr144782 17 45506825 to 45506857 32 + TSS region transcription start site region 144782
Aars2 17 45506841 to 45520843 14002 + protein coding gene alanyl-tRNA synthetase 2, mitochondrial
Tssr144783 17 45519372 to 45519397 25 + TSS region transcription start site region 144783
Cpgi9186 17 45523322 to 45523632 310 CpG island CpG island 9186
Tssr144784 17 45523416 to 45523451 35 + TSS region transcription start site region 144784
Tcte1 17 45523434 to 45542679 19245 + protein coding gene t-complex-associated testis expressed 1
Tssr144785 17 45523499 to 45523532 33 + TSS region transcription start site region 144785
Cpgi9187 17 45530499 to 45530666 167 CpG island CpG island 9187
Cpgi9188 17 45534710 to 45535152 442 CpG island CpG island 9188
Cpgi9189 17 45539627 to 45540062 435 CpG island CpG island 9189
Tssr144786 17 45539652 to 45539653 1 + TSS region transcription start site region 144786
Tmem151b 17 45541952 to 45549677 7725 - protein coding gene transmembrane protein 151B
D17Mit35 17 45542443 to 45542672 229 DNA segment DNA segment, Chr 17, Massachusetts Institute of Technology 35
Tssr148205 17 45544377 to 45544381 4 - TSS region transcription start site region 148205
Cpgi9190 17 45544649 to 45546181 1532 CpG island CpG island 9190
Tssr5128 17 45545753 to 45545759 6 + TSS region transcription start site region 5128
Cpgi9191 17 45546804 to 45547106 302 CpG island CpG island 9191
Cpgi9192 17 45548555 to 45549985 1430 CpG island CpG island 9192
Tssr148206 17 45549546 to 45549583 37 - TSS region transcription start site region 148206
Tssr148207 17 45549655 to 45549668 13 - TSS region transcription start site region 148207
Tssr148208 17 45549687 to 45549719 32 - TSS region transcription start site region 148208
Cpgi9193 17 45555575 to 45556316 741 CpG island CpG island 9193
Tssr144787 17 45555636 to 45555673 37 + TSS region transcription start site region 144787
Tssr144788 17 45555693 to 45555714 21 + TSS region transcription start site region 144788
Nfkbie 17 45555703 to 45563169 7466 + protein coding gene nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon
Tssr144789 17 45555727 to 45555746 19 + TSS region transcription start site region 144789
Tssr144790 17 45555794 to 45555799 5 + TSS region transcription start site region 144790
Tssr144791 17 45555805 to 45555817 12 + TSS region transcription start site region 144791
Tssr144792 17 45555878 to 45555900 22 + TSS region transcription start site region 144792
Tssr144793 17 45556259 to 45556270 11 + TSS region transcription start site region 144793
Cpgi9194 17 45560322 to 45560532 210 CpG island CpG island 9194
Tssr144794 17 45561004 to 45561008 4 + TSS region transcription start site region 144794
Cpgi9195 17 45563710 to 45564696 986 CpG island CpG island 9195
Slc35b2 17 45563879 to 45567671 3792 + protein coding gene solute carrier family 35, member B2
Tssr144795 17 45563928 to 45563973 45 + TSS region transcription start site region 144795
Tssr144796 17 45563978 to 45563987 9 + TSS region transcription start site region 144796
Hsp90ab1 17 45567778 to 45573261 5483 - protein coding gene heat shock protein 90 alpha (cytosolic), class B member 1
Tssr148209 17 45567985 to 45568009 24 - TSS region transcription start site region 148209
Tssr148210 17 45568011 to 45568030 19 - TSS region transcription start site region 148210
Tssr148211 17 45568061 to 45568082 21 - TSS region transcription start site region 148211
Tssr148212 17 45568272 to 45568282 10 - TSS region transcription start site region 148212
Tssr144797 17 45568356 to 45568382 26 + TSS region transcription start site region 144797
Tssr148213 17 45568381 to 45568415 34 - TSS region transcription start site region 148213
Tssr148214 17 45568535 to 45568549 14 - TSS region transcription start site region 148214
Tssr144798 17 45568909 to 45568953 44 + TSS region transcription start site region 144798
Tssr148215 17 45568962 to 45568976 14 - TSS region transcription start site region 148215
Tssr148216 17 45568993 to 45569013 20 - TSS region transcription start site region 148216
Tssr148217 17 45569033 to 45569072 39 - TSS region transcription start site region 148217
Tssr148218 17 45569098 to 45569109 11 - TSS region transcription start site region 148218
Tssr5129 17 45569282 to 45569294 12 - TSS region transcription start site region 5129
Tssr148219 17 45569297 to 45569318 21 - TSS region transcription start site region 148219
Tssr148220 17 45569346 to 45569381 35 - TSS region transcription start site region 148220
Tssr148221 17 45569560 to 45569582 22 - TSS region transcription start site region 148221
Tssr148222 17 45569590 to 45569612 22 - TSS region transcription start site region 148222
Tssr148223 17 45569619 to 45569647 28 - TSS region transcription start site region 148223
Tssr148224 17 45569763 to 45569798 35 - TSS region transcription start site region 148224
Tssr144799 17 45570295 to 45570317 22 + TSS region transcription start site region 144799
Tssr148225 17 45570325 to 45570382 57 - TSS region transcription start site region 148225
Tssr144800 17 45570335 to 45570348 13 + TSS region transcription start site region 144800
Tssr144801 17 45570364 to 45570388 24 + TSS region transcription start site region 144801
Tssr144802 17 45570401 to 45570461 60 + TSS region transcription start site region 144802
Tssr148226 17 45570436 to 45570504 68 - TSS region transcription start site region 148226
Tssr144803 17 45570464 to 45570469 5 + TSS region transcription start site region 144803
Tssr144804 17 45570508 to 45570536 28 + TSS region transcription start site region 144804
Tssr148227 17 45570581 to 45570611 30 - TSS region transcription start site region 148227
Tssr148228 17 45570699 to 45570714 15 - TSS region transcription start site region 148228
Tssr144805 17 45570722 to 45570729 7 + TSS region transcription start site region 144805
Tssr148229 17 45570786 to 45570805 19 - TSS region transcription start site region 148229
Tssr148230 17 45571037 to 45571064 27 - TSS region transcription start site region 148230
Tssr148231 17 45571068 to 45571073 5 - TSS region transcription start site region 148231
Tssr148232 17 45571126 to 45571158 32 - TSS region transcription start site region 148232
Tssr5130 17 45571462 to 45571484 22 - TSS region transcription start site region 5130
Tssr148233 17 45571503 to 45571559 56 - TSS region transcription start site region 148233
Cpgi9196 17 45572356 to 45574471 2115 CpG island CpG island 9196
Tssr148234 17 45572441 to 45572477 36 - TSS region transcription start site region 148234
Tssr148235 17 45572495 to 45572506 11 - TSS region transcription start site region 148235
Tssr148236 17 45572877 to 45572898 21 - TSS region transcription start site region 148236
Tssr148237 17 45573262 to 45573272 10 - TSS region transcription start site region 148237
Gm35399 17 45573315 to 45574790 1475 + lncRNA gene predicted gene, 35399
Tssr5131 17 45574084 to 45574087 3 + TSS region transcription start site region 5131
Slc29a1 17 45585200 to 45599603 14403 - protein coding gene solute carrier family 29 (nucleoside transporters), member 1
Gm17080 17 45586120 to 45588377 2257 + antisense lncRNA gene predicted gene 17080
Tssr148238 17 45592370 to 45592411 41 - TSS region transcription start site region 148238
Tssr148239 17 45592415 to 45592452 37 - TSS region transcription start site region 148239
Tssr148240 17 45592453 to 45592472 19 - TSS region transcription start site region 148240
Tssr148241 17 45592485 to 45592497 12 - TSS region transcription start site region 148241
Tssr148242 17 45592569 to 45592581 12 - TSS region transcription start site region 148242
Tssr148243 17 45592600 to 45592611 11 - TSS region transcription start site region 148243
Tssr148244 17 45592827 to 45592856 29 - TSS region transcription start site region 148244
Tssr148245 17 45592862 to 45592896 34 - TSS region transcription start site region 148245
Tssr148246 17 45592897 to 45592911 14 - TSS region transcription start site region 148246
Tssr148247 17 45592912 to 45592952 40 - TSS region transcription start site region 148247
Tssr148248 17 45593626 to 45593656 30 - TSS region transcription start site region 148248
Tssr148249 17 45593665 to 45593690 25 - TSS region transcription start site region 148249
Cpgi9197 17 45595051 to 45596098 1047 CpG island CpG island 9197
Tssr148250 17 45595503 to 45595575 72 - TSS region transcription start site region 148250
Tssr144806 17 45595642 to 45595678 36 + TSS region transcription start site region 144806
Tssr148251 17 45595717 to 45595746 29 - TSS region transcription start site region 148251
Tssr148252 17 45595757 to 45595768 11 - TSS region transcription start site region 148252
Tssr148253 17 45595842 to 45595867 25 - TSS region transcription start site region 148253
Tssr148254 17 45596657 to 45596666 9 - TSS region transcription start site region 148254
Tssr148255 17 45596683 to 45596699 16 - TSS region transcription start site region 148255
Tssr148256 17 45596708 to 45596720 12 - TSS region transcription start site region 148256
Cpgi9198 17 45599440 to 45599761 321 CpG island CpG island 9198
Tssr148257 17 45599581 to 45599597 16 - TSS region transcription start site region 148257
Tssr148258 17 45599604 to 45599623 19 - TSS region transcription start site region 148258
Mymx 17 45600971 to 45602102 1131 - protein coding gene myomixer, myoblast fusion factor
Cpgi9199 17 45601266 to 45601769 503 CpG island CpG island 9199
Tssr148259 17 45601835 to 45601844 9 - TSS region transcription start site region 148259
Tssr148260 17 45601885 to 45601928 43 - TSS region transcription start site region 148260
Tssr148261 17 45602045 to 45602056 11 - TSS region transcription start site region 148261
Tssr148262 17 45602070 to 45602086 16 - TSS region transcription start site region 148262
Tssr148263 17 45602096 to 45602108 12 - TSS region transcription start site region 148263
Tssr148264 17 45610125 to 45610174 49 - TSS region transcription start site region 148264
Tssr148265 17 45613025 to 45613073 48 - TSS region transcription start site region 148265
Gm25008 17 45620679 to 45620759 80 + snRNA gene predicted gene, 25008
Capn11 17 45630204 to 45659325 29121 - protein coding gene calpain 11
Cpgi9200 17 45630229 to 45630623 394 CpG island CpG island 9200
Cpgi9201 17 45642546 to 45642935 389 CpG island CpG island 9201
Tssr148266 17 45659312 to 45659335 23 - TSS region transcription start site region 148266
Tmem63b 17 45660172 to 45686254 26082 - protein coding gene transmembrane protein 63b
Cpgi9202 17 45661351 to 45661643 292 CpG island CpG island 9202
Cpgi9203 17 45662819 to 45663094 275 CpG island CpG island 9203
Cpgi9204 17 45663320 to 45663809 489 CpG island CpG island 9204
Gm16172 17 45663519 to 45666209 2690 + antisense lncRNA gene predicted gene 16172
Tssr148267 17 45674230 to 45674233 3 - TSS region transcription start site region 148267
Cpgi9205 17 45685167 to 45686783 1616 CpG island CpG island 9205
Tssr148268 17 45686080 to 45686087 7 - TSS region transcription start site region 148268
Tssr148269 17 45686133 to 45686185 52 - TSS region transcription start site region 148269
Tssr148270 17 45686210 to 45686213 3 - TSS region transcription start site region 148270
Tssr148271 17 45686214 to 45686265 51 - TSS region transcription start site region 148271
Mrpl14 17 45686322 to 45698495 12173 + protein coding gene mitochondrial ribosomal protein L14
Tssr144807 17 45686335 to 45686402 67 + TSS region transcription start site region 144807
Tssr148272 17 45686792 to 45686806 14 - TSS region transcription start site region 148272
Tssr148273 17 45686810 to 45686829 19 - TSS region transcription start site region 148273
Tssr148274 17 45686854 to 45686882 28 - TSS region transcription start site region 148274
Tssr148275 17 45686899 to 45686923 24 - TSS region transcription start site region 148275
Tssr144808 17 45695422 to 45695433 11 + TSS region transcription start site region 144808
Tssr144809 17 45699582 to 45699587 5 + TSS region transcription start site region 144809
Gm35456 17 45700864 to 45726904 26040 - lncRNA gene predicted gene, 35456
Tssr148276 17 45721066 to 45721106 40 - TSS region transcription start site region 148276
Cpgi9206 17 45724098 to 45724440 342 CpG island CpG island 9206
BE949265 17 45727825 to 45732218 4393 + unclassified gene cDNA sequence BE949265
1600014C23Rik 17 45732864 to 45733844 980 - protein coding gene RIKEN cDNA 1600014C23 gene
Cpgi9207 17 45733508 to 45734291 783 CpG island CpG island 9207
Tssr148277 17 45733843 to 45733848 5 - TSS region transcription start site region 148277
F630040K05Rik 17 45734506 to 45786745 52239 + lincRNA gene RIKEN cDNA F630040K05 gene
Tssr144810 17 45734585 to 45734630 45 + TSS region transcription start site region 144810
Cpgi9208 17 45736338 to 45737491 1153 CpG island CpG island 9208
Tssr148278 17 45746786 to 45746793 7 - TSS region transcription start site region 148278
Tssr148279 17 45746802 to 45746819 17 - TSS region transcription start site region 148279
Tssr148280 17 45746821 to 45746874 53 - TSS region transcription start site region 148280
Tssr5132 17 45747119 to 45747129 10 + TSS region transcription start site region 5132
Tssr148281 17 45756622 to 45756628 6 - TSS region transcription start site region 148281
Tssr148282 17 45756960 to 45756974 14 - TSS region transcription start site region 148282
Tssr148283 17 45757949 to 45757959 10 - TSS region transcription start site region 148283
Tssr144811 17 45758249 to 45758258 9 + TSS region transcription start site region 144811
Gm46607 17 45788733 to 45826352 37619 + lncRNA gene predicted gene, 46607
Cpgi9209 17 45805134 to 45806028 894 CpG island CpG island 9209
Gm35692 17 45821875 to 45828882 7007 - lincRNA gene predicted gene, 35692
Tssr148284 17 45828853 to 45828882 29 - TSS region transcription start site region 148284
4930542M03Rik 17 45880119 to 45881452 1333 - lincRNA gene RIKEN cDNA 4930542M03 gene
Gm41584 17 45885346 to 45888630 3284 + lincRNA gene predicted gene, 41584
Cpgi9210 17 45886387 to 45886548 161 CpG island CpG island 9210
Gm41585 17 45935294 to 45946453 11159 + lncRNA gene predicted gene, 41585